Silkworm Genome Informatics Database

Gene

KWMTBOMO03018

Pre Gene Modal

BGIBMGA014387

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]

Location

Bomo_Chr5(-):15900586-15902354 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.675 Nuclear Reliability : 2.057

CDS

ATGAGAACTAGCCACTCACAGTATTTAACAATGGTGGAATTTATGGAAGCAAATGGAGATTTATCAAAGCCGTCAGGTGGTCCACGAGGTCGCAATTTTATACAGATGAAGTGGAAAGAGTTAACGGGAATATTAAATAGCGATTCTTCAGGAGATCCTAAGAGTGAGGACAAATGGCGTAAGTTTACTGTAAATGAAGAATATTCATCAAGAGAAGTTAGAGAAATTACACGCAGAGTTGCTCTGAGAAAGAAAAATAATCCTGTGGACATAAATGACGCGGAATTCAAAAATAGATACCGGTTGAATAAAGAATCATTTAAGTTTCTTTTTAATCAACTTGAGCAAAAAACATCTTTAAAAGCAAGTTCCAGGATAAGTTTGGAACTTAAGGTTCTTTGCGCGCTATCTTTTTATGCCACTGGATCTTACCAACGCTTAGTGGGAATGGCTAAATATTTGGGCCAAACGACTGTAAGCAAATGTGTGAAGGAAGTAACAGATGCTCTTGTAACTCCTGCAATTTTAAATACTTTCATAAAATTTCCTTATGCCAGAGCTGATAGAGATGTAATAAGAAACAAGTAA

Protein

MRTSHSQYLTMVEFMEANGDLSKPSGGPRGRNFIQMKWKELTGILNSDSSGDPKSEDKWRKFTVNEEYSSREVREITRRVALRKKNNPVDINDAEFKNRYRLNKESFKFLFNQLEQKTSLKASSRISLELKVLCALSFYATGSYQRLVGMAKYLGQTTVSKCVKEVTDALVTPAILNTFIKFPYARADRDVIRNK

Uniprot

H9JCB9 A0A2A4JV88 J9KMC8 J9JJQ0 X1XEM7 X1XCH8 + More
J9LBK2 A0A026WNW0 J9M2Q3 J9L396 D7EHV8 A0A2S2PSI0 A0A151IUS3 A0A151INT5 A0A0J7KHJ2

Pubmed

19121390 24508170 18362917 19820115

EMBL

BABH01031580 BABH01031581 NWSH01000554 PCG75686.1 ABLF02009520 ABLF02023210 + More
ABLF02041985 ABLF02058499 ABLF02002012 ABLF02004302 ABLF02059604 KK107141 EZA57618.1 ABLF02004372 ABLF02008467 DS497665 EFA12167.1 GGMR01019801 MBY32420.1 KQ980962 KYN11025.1 KQ976913 KYN07137.1 LBMM01007503 KMQ89681.1

Proteomes

UP000005204 UP000218220 UP000007819 UP000053097 UP000007266 UP000078492 + More
UP000078542 UP000036403

PRIDE

H9JCB9

Pfam

PF13359 DDE_Tnp_4

Interpro

IPR027806 HARBI1_dom + More
IPR026103 HARBI1_animal

ProteinModelPortal

H9JCB9 A0A2A4JV88 J9KMC8 J9JJQ0 X1XEM7 X1XCH8 + More
J9LBK2 A0A026WNW0 J9M2Q3 J9L396 D7EHV8 A0A2S2PSI0 A0A151IUS3 A0A151INT5 A0A0J7KHJ2

KEGG

101742801 K23222 nuclease HARBI1 [EC:3.1.-.-] | (RefSeq) putative nuclease HARBI1

GO

Length:

195

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.49015

Exp number, first 60 AAs:

0

Total prob of N-in:

0.31316

outside

1 - 195

Pi

380.667994

Theta

199.63897

Tajima's D

3.020239

CLR

0.090171

CSRT

0.978451077446128

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree