SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO03018
Pre Gene Modal
BGIBMGA014387
Annotation
PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 1.675 Nuclear   Reliability : 2.057
 

Sequence

CDS
ATGAGAACTAGCCACTCACAGTATTTAACAATGGTGGAATTTATGGAAGCAAATGGAGATTTATCAAAGCCGTCAGGTGGTCCACGAGGTCGCAATTTTATACAGATGAAGTGGAAAGAGTTAACGGGAATATTAAATAGCGATTCTTCAGGAGATCCTAAGAGTGAGGACAAATGGCGTAAGTTTACTGTAAATGAAGAATATTCATCAAGAGAAGTTAGAGAAATTACACGCAGAGTTGCTCTGAGAAAGAAAAATAATCCTGTGGACATAAATGACGCGGAATTCAAAAATAGATACCGGTTGAATAAAGAATCATTTAAGTTTCTTTTTAATCAACTTGAGCAAAAAACATCTTTAAAAGCAAGTTCCAGGATAAGTTTGGAACTTAAGGTTCTTTGCGCGCTATCTTTTTATGCCACTGGATCTTACCAACGCTTAGTGGGAATGGCTAAATATTTGGGCCAAACGACTGTAAGCAAATGTGTGAAGGAAGTAACAGATGCTCTTGTAACTCCTGCAATTTTAAATACTTTCATAAAATTTCCTTATGCCAGAGCTGATAGAGATGTAATAAGAAACAAGTAA
Protein
MRTSHSQYLTMVEFMEANGDLSKPSGGPRGRNFIQMKWKELTGILNSDSSGDPKSEDKWRKFTVNEEYSSREVREITRRVALRKKNNPVDINDAEFKNRYRLNKESFKFLFNQLEQKTSLKASSRISLELKVLCALSFYATGSYQRLVGMAKYLGQTTVSKCVKEVTDALVTPAILNTFIKFPYARADRDVIRNK

Summary

Pfam
PF13359   DDE_Tnp_4
Interpro
IPR027806   HARBI1_dom        + More
IPR026103   HARBI1_animal       

Ontologies

GO

Topology

Length:
195
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.49015
Exp number, first 60 AAs:
0
Total prob of N-in:
0.31316
outside
1  -  195
 
 

Population Genetic Test Statistics

Pi
380.667994
Theta
199.63897
Tajima's D
3.020239
CLR
0.090171
CSRT
0.978451077446128
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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