Silkworm Genome Informatics Database

Gene

KWMTBOMO03016 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003602

Annotation

PREDICTED:_U2_snRNP-associated_SURP_motif-containing_protein_[Bombyx_mori]

Location

Bomo_Chr5(-):15883985-15897484 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.761

CDS

ATGAGTCTTAGAGGTCTATCTAAAAGGGAGTTGGAGGAACTTCGAAAGAAAGAAGAAGAAGAAGCCGCTGCACATGTATTCAAAGAATTTGTGGAAACTTTCCAAGAAGCTCCGAGCAGTACCAGTAAAGTTTGGGTCAAAGCAGGAACCTATGATGCAGGAGCTCGAAGGGAAGATACAAGTGAAAAAGGTAAACTGTATAAGCCTGTTTCTCGTTTGGATGAGAAACGTGGTGGGAATGACTCTGACATGCTTAGGAATCTTACGTTGAAGCAAGAATCAGGCAAACCGCGATCCAAGCAAAAAGGCCAAGATAAGAAGAAAAGCAACTTAGAATTATTTAAAGAAGAGCTAAGACAAATACAAGAGGAGCGTTCAGAACGACACAAGTACAAAAATGTACTCAGAGACAAAGGAGCCATTGAACAAACCTGTGATATGATCCCTGATGTGGGCTCATATGATACCGGAGATCCAAATACAACTAATCTGTACTTAGGAAATCTAAACCCAAAGATAACAGAACACCAGTTAATGGAGATCTTTGGTCGTTACGGGCCATTAGCAAGTATCAAGATAATGTGGCCACGTTCGGATGAAGAGAAGGCACGGGGCCGGAACTGTGGCTTTGTAGCCTTCATGTCTCGTAAGGATGGTGAACGAGCCCTGCGGTGTATTAATGGCAAAGAGATAATGAATTACGAGATGAAGTTAGGGTGGGGCAAGGCGGTCGTGATACCCCCGGTCCCCATCTACATCCCGCCGGCGCTGCAGCAGCCCTGCAAGCCGCCGCCGCCCTCCGGCCTGCCCTTCAACGCGCAGCCGCCCAGACACCTCATGCACAAGATACCACGACTACGACCCGGCGAATACAGTCCCAGTGATCCCGATGACAAGGAACTCTACGACAAGATCCTGTCCCAGTCCATAGTTAAAGTTGTGGTACCCACAGAAAGAAACATCCTAATGTTAATACATCGAATGGTCGAGTTCGTCATCCGCGAGGGTCCGATGTTCGAGGCCATCATCATGAACAAGGAGATGCACAACCCCTACTTCCGGTTTCTGTTCGAGAACCAGTCGCCGGCCCACGTTTACTATAGGTGGAAGCTGTACTCCATGCTGCAGGGAGACTCGCCTAAACAGTGGAGGCTGGACGACTTCAGAATGTTTAAAGGTGGTTCAGTCTGGCGGCCGCCGGTGATGAATATGTACACGGCGGGCATGCCCGACGAGCTGGTGGAGGAGGAGGACGCCAAGGACTCCATGAGAGGAACGCTCTCCGTCAATCAGCGCGACCGGCTGGAGGAGCTGATCCGCTCGCTGTCCCCGACGCGCGGCAGCGTGGGCGCGGCCATGGCGTGGTGCCTGGAGCACGCGGAGGCGGCGGGCGAGGTGGCGCAGTGCGTGTGCGAGGCGCTGGGCGGCGCCGACACCGCGCCGCACCGCCGCGTGGCGCGCCTCTACCTGCTCTCCGACATCCTGCACAACGCCGGCGCCAAGCTCACCAACGCCAGCGCCTACCGCGCCGCATTCCAGCAGCGGCTGGCTGAGATCATGCGCAACTGCCAGCAGGCCTGGGCCCGCATGCCGTCCCGCCTGCAGCAGGAGGGCTTCCGGGCCCGGGTCACGCGCATCCTGCAGGCCTGGGCCGACTGGGCAGTCTATCCCACTGACTTCCTACTACATATTAACGACATCTTCCTGGGACAAGATAAGGAGCGTCGTCCCTCGACCGAGGCGGGTGCGGGCGGCGCCGGCGCGGTGGAGGAGGCGGTGTCCCCGCGCTCCGACGCGTCCTCCTCGTCGTGGGAGGGCGGCGCCCGGGGCCCGCTGGACGGCGCCGCCCTGCGCCGCCTCGCCGCCGGCCGGGAGCCGCACGCGCCCGCGCTGCCGCCGCCGGACATCGACGGCGTGCCCGTGGATGAAGATATTGACGGCGTGCCGCTGGAGCCGGACAGCGAGGAGGGCGCGGGGCAGGGCGGGTTCGTGCCGTCCCGCTGGGAGAGCGTGGAGCCCGCCGCGCCGCACACCCCGCCCCCGCCCGCACTGGACGAGCGCGCCGCCCCGCCCCCCGCGCCCGCGCCCGCACCCGACACGTCGGAGGAGCAGACGCTGAAGCGCGAGACGCTGCGCGAGATCGAGGTGCGCGTGCTGAAGTACGCCGACGAGCTGGAGGGCGGAGCCCGCGCGCCGCGCCCCGGCCTCGCGCCCGCGCAGCAGATACAGCACTACCGACGGAAACTCATCAAGAAGGCGCTGCGCGAGGTGCGGGAGGCGAGTGCTAGAGAGTCGCCCGAACAGAGACGAGTCACTGAGGATGATGCGTACTCAACTTCATCTAAGAAATCAAAGAAGTCCAGAGAGCCTACGTTATCGCCGCCGCCGAAACGGTCGCGTCACAGTGATCGCCGTTCCCGATCCAGGTCTAAGTCTCGCGAGAAGGACAGAGATCGAGAGAGGAGCCGCGACCACGAGAGAGAGCGAGACAGGGATAGGCGACGTCGTTCGCCGGCCACGCCCCCCTCGCACCGCAAGCATCACACCAAACACGCCAAGTACAAGTACTGA

Protein

MSLRGLSKRELEELRKKEEEEAAAHVFKEFVETFQEAPSSTSKVWVKAGTYDAGARREDTSEKGKLYKPVSRLDEKRGGNDSDMLRNLTLKQESGKPRSKQKGQDKKKSNLELFKEELRQIQEERSERHKYKNVLRDKGAIEQTCDMIPDVGSYDTGDPNTTNLYLGNLNPKITEHQLMEIFGRYGPLASIKIMWPRSDEEKARGRNCGFVAFMSRKDGERALRCINGKEIMNYEMKLGWGKAVVIPPVPIYIPPALQQPCKPPPPSGLPFNAQPPRHLMHKIPRLRPGEYSPSDPDDKELYDKILSQSIVKVVVPTERNILMLIHRMVEFVIREGPMFEAIIMNKEMHNPYFRFLFENQSPAHVYYRWKLYSMLQGDSPKQWRLDDFRMFKGGSVWRPPVMNMYTAGMPDELVEEEDAKDSMRGTLSVNQRDRLEELIRSLSPTRGSVGAAMAWCLEHAEAAGEVAQCVCEALGGADTAPHRRVARLYLLSDILHNAGAKLTNASAYRAAFQQRLAEIMRNCQQAWARMPSRLQQEGFRARVTRILQAWADWAVYPTDFLLHINDIFLGQDKERRPSTEAGAGGAGAVEEAVSPRSDASSSSWEGGARGPLDGAALRRLAAGREPHAPALPPPDIDGVPVDEDIDGVPLEPDSEEGAGQGGFVPSRWESVEPAAPHTPPPPALDERAAPPPAPAPAPDTSEEQTLKRETLREIEVRVLKYADELEGGARAPRPGLAPAQQIQHYRRKLIKKALREVREASARESPEQRRVTEDDAYSTSSKKSKKSREPTLSPPPKRSRHSDRRSRSRSKSREKDRDRERSRDHERERDRDRRRRSPATPPSHRKHHTKHAKYKY

Uniprot

A0A1S4ERR3 A0A2S2Q4C3 A0A2H8TJA8 J9JML4 A0A2S2PMH2 A0A0M4EHQ4 + More
A0A034WPI2 A0A0K8WLE2 A0A0K8VIY5 E0VG98 A0A195B7J4 A0A195DWK2 A0A1A9V280 B3ME93 A0A1B0GC75 A0A1B0AF84

Pubmed

25348373 20566863 17994087

EMBL

GGMS01003366 MBY72569.1 GFXV01002276 MBW14081.1 ABLF02028424 GGMR01017996 + More
MBY30615.1 CP012524 ALC40492.1 GAKP01001446 JAC57506.1 GDHF01000455 JAI51859.1 GDHF01013496 JAI38818.1 DS235133 EEB12404.1 KQ976574 KYM80169.1 KQ980204 KYN17221.1 CH902619 EDV36499.1 CCAG010007824

Proteomes

UP000079169 UP000007819 UP000092553 UP000009046 UP000078540 UP000078492 + More
UP000078200 UP000007801 UP000092444 UP000092445

Pfam

PF01805   Surp        + More
PF00076   RRM_1
PF08312   cwf21

Interpro

IPR008942   ENTH_VHS        + More
IPR035009   SR140_RRM
IPR006569   CID_dom
IPR035979   RBD_domain_sf
IPR000061   Surp
IPR035967   SWAP/Surp_sf
IPR000504   RRM_dom
IPR012677   Nucleotide-bd_a/b_plait_sf
IPR013170   mRNA_splic_Cwf21_dom

SUPFAM

SSF109905   SSF109905        + More
SSF48464   SSF48464
SSF54928   SSF54928

Gene 3D

1.10.10.790 1.25.40.90 3.30.70.330

CDD

cd12223 RRM_SR140

ProteinModelPortal

A0A1S4ERR3 A0A2S2Q4C3 A0A2H8TJA8 J9JML4 A0A2S2PMH2 A0A0M4EHQ4 + More
A0A034WPI2 A0A0K8WLE2 A0A0K8VIY5 E0VG98 A0A195B7J4 A0A195DWK2 A0A1A9V280 B3ME93 A0A1B0GC75 A0A1B0AF84

PDB

6G90 E-value=4.72341e-07, Score=132

KEGG

101742946 K12842 U2-associated protein SR140 | (RefSeq) U2 snRNP-associated SURP motif-containing protein

PATHWAY

03040 Spliceosome - Bombyx mori (domestic silkworm)

GO

GO:0003723 GO:0006396 GO:0003676 GO:0000166 GO:0006414 GO:0016020 GO:0051103 GO:0003677 GO:0006281 GO:0048384

Length:

856

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00926999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00048

outside

1 - 856

Pi

214.690287

Theta

166.523626

Tajima's D

1.099528

CLR

0.324573

CSRT

0.689415529223539

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics