Gene

KWMTBOMO03008

Pre Gene Modal

BGIBMGA003606

Annotation

PREDICTED:_nucleoside_diphosphate-linked_moiety_X_motif_19?_mitochondrial-like_[Bombyx_mori]

Location

Bomo_Chr5(-):15550246-15555314      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.522 Nuclear   Reliability : 1.152

CDS

ATGGCAACACTCGGTAAACGTACTCGGACGGGTCGCGGTGCGTTTCCAAACAGCGTGGTGTTCCCCGGCGGAGTTACCGAAGACGCTGACGAAGACGATCGCTGGCTACAGCTGTTCAGTTTGTTTGGTTACACGAACACAGATTTAGAGTCTCTACATCACGCTAATGGTCCTATCACTCCAATTTTACAAAAGAATCCCATTCGAAGGCACATATCATTAAGAATTACAGCCATCAGGGAAACTTTTGAAGAGTTAGGGATTCTGCTATGCAGTCAGCAGCACAAGAAGCAAAAGGACGGCTTAAGGGCGGATTTCATAGCTAATATTGATGTTAAAACTTGGCAGGACAGAGTAAGCAAGAATCCAGAAAGCCTTTGGAACCTGTGTGAAGATTATAAGTGCTATCCAGACATATGGTCACTACATTACTGGAGCAATTGGTTAACTCCAGCCACTTTACCGAAGAGATTCAACACAGCCTTCTTTGTGACAGCGTTAGAGGAAAAGCCTGAGTTAAAAAATTACTCTACAGAAGTTGCCTTTGTTAAGTGGTCAGACCCAACTGAGATACTCAACAGCAGTGACGTGAAAGCAACAGTTGTTATGGTCACGAACTTGTCTTTCCTGTGTACGTAA

Protein

MATLGKRTRTGRGAFPNSVVFPGGVTEDADEDDRWLQLFSLFGYTNTDLESLHHANGPITPILQKNPIRRHISLRITAIRETFEELGILLCSQQHKKQKDGLRADFIANIDVKTWQDRVSKNPESLWNLCEDYKCYPDIWSLHYWSNWLTPATLPKRFNTAFFVTALEEKPELKNYSTEVAFVKWSDPTEILNSSDVKATVVMVTNLSFLCT

Uniprot

H9J269   I4DPG6   A0A194PVF5   A0A0N1I4S7   A0A2A4J515   A0A212FJW5   + More
A0A1B0FNM7   D3TL26   A0A2P8YMX7   A0A1B0A518   A0A1B0BJG1   A0A2J7PZQ0   A0A0C9R086   A0A1A9V9K8   A0A026WP48   A0A232F570   A0A0L7R6Q5   A0A1Y1L567   A0A0T6BB49   B4I5W1   A0A154P563   A0A0T6AZS1   E2B2T2   A0A088AGP6   A0A1Y1L0L0   Q9VIV6   A0A1Y1L0E2   A0A1I8MI79   E9ICM1   B4Q9Y8   B4PAZ4   B3MN59   T1PJ57   A0A2A3E9X4   A0A0P8XFP8   A0A3B0KBE1   B3NM47   A0A1L8DAT2   Q29K58   B4GWX8   A0A1I8PRM5   B4M8J6   A0A1L8DAD0   A0A0M4E5Q9   A0A1I8PRR9   A0A1W4VG39   A0A195CUC9   A0A158NQ78   A0A1Y1L0D4   B4JCV6   A0A0J7NHD2   E2A5K3   A0A1I8M2J5   A0A1I8NUH6   A0A2B4RLM4   A0A195DER3   W8C7D1   A0A3M6UHR7   A0A1I8Q5P3   F4X5I6   A0A1B0D1D1   A0A034WD54   B4MYR4   A0A1I8MFU3   A0A0P5C3X5   A0A0N7ZUY7   A0A0P6EDN2   A0A0P5LD38   A0A0P6DDT0   K7IV53   A0A0P4Y577   A0A0P5C827   A0A0P5GS02   A0A0P5KFN9   A0A0P5DRG9   A0A0P5H4F7   A0A195FQE5   A0A0P6H1A2   B0W4P1   A0A0P5YTT5   A0A162SSA6   A0A0P6CRI3   G3PVB0   A0A0L0BQ83   A0A195BJ86   A0A1Q3FJ93   A0A151WYH1   E0VQL8   A0A1I8P8E6   A0A182YMQ6   C3ZBL8   A0A0P4YTT0   C3ZIX2   B3MN62   A0A0A1XLV1   A0A2I4CKG6   I3J2E7   A0A0P5J495  

Pubmed

19121390    22651552    26354079    22118469    20353571    29403074    + More
24508170    30249741    28648823    28004739    17994087    20798317    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    21282665    22936249    17550304    15632085    21347285    24495485    30382153    21719571    25348373    20075255    26108605    20566863    25244985    18563158    25830018    25186727   

EMBL

BABH01007424    AK403590    BAM19806.1    KQ459597    KPI95110.1    KQ461187    + More
KPJ07352.1    NWSH01003361    PCG66482.1    AGBW02008204    OWR54033.1    CCAG010015909    EZ422122    ADD18321.1    PYGN01000482    PSN45583.1    JXJN01015380    NEVH01020333    PNF21814.1    GBYB01000236    JAG70003.1    KK107148    QOIP01000009    EZA57441.1    RLU18392.1    NNAY01000950    OXU25762.1    KQ414646    KOC66509.1    GEZM01068162    JAV67125.1    LJIG01002384    KRT84556.1    CH480822    EDW55767.1    KQ434822    KZC07085.1    LJIG01022477    KRT80365.1    GL445235    EFN89997.1    GEZM01068163    JAV67124.1    AE014134    AY118739    AAF53808.1    AAM50599.1    GEZM01068164    JAV67123.1    GL762326    EFZ21688.1    CM000361    CM002910    EDX05518.1    KMY91022.1    CM000158    EDW90423.1    CH902620    EDV32037.1    KA648150    AFP62779.1    KZ288326    PBC27976.1    KPU73741.1    OUUW01000010    SPP85470.1    CH954179    EDV54647.1    GFDF01010660    JAV03424.1    CH379061    EAL33320.2    CH479195    EDW27305.1    CH940654    EDW57522.1    GFDF01010661    JAV03423.1    CP012523    ALC39496.1    KQ977279    KYN04265.1    ADTU01022920    GEZM01068165    JAV67122.1    CH916368    EDW03195.1    LBMM01005007    KMQ91920.1    GL436993    EFN71286.1    LSMT01000407    PFX18501.1    KQ980934    KYN11327.1    GAMC01003659    JAC02897.1    RCHS01001525    RMX53074.1    GL888719    EGI58276.1    AJVK01002574    GAKP01006877    JAC52075.1    CH963913    EDW77253.2    GDIP01180091    JAJ43311.1    GDIP01210041    JAJ13361.1    GDIQ01078458    JAN16279.1    GDIQ01171474    JAK80251.1    GDIQ01080352    JAN14385.1    AAZX01007538    GDIP01232447    JAI90954.1    GDIP01174795    JAJ48607.1    GDIQ01243453    JAK08272.1    GDIQ01191518    JAK60207.1    GDIP01153804    JAJ69598.1    GDIQ01255001    JAJ96723.1    KQ981382    KYN42139.1    GDIQ01036282    JAN58455.1    DS231838    EDS33886.1    GDIP01053572    JAM50143.1    LRGB01000024    KZS21585.1    GDIQ01088256    JAN06481.1    JRES01001524    KNC22245.1    KQ976464    KYM84429.1    GFDL01007447    JAV27598.1    KQ982652    KYQ52807.1    DS235430    EEB15674.1    GG666603    EEN50255.1    GDIP01222792    JAJ00610.1    GG666630    EEN47488.1    EDV32040.2    GBXI01002724    JAD11568.1    AERX01000001    AERX01000002    GDIQ01211206    JAK40519.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000007151    UP000092444    + More
UP000245037    UP000092445    UP000092460    UP000235965    UP000078200    UP000053097    UP000279307    UP000215335    UP000053825    UP000001292    UP000076502    UP000008237    UP000005203    UP000000803    UP000095301    UP000000304    UP000002282    UP000007801    UP000242457    UP000268350    UP000008711    UP000001819    UP000008744    UP000095300    UP000008792    UP000092553    UP000192221    UP000078542    UP000005205    UP000001070    UP000036403    UP000000311    UP000225706    UP000078492    UP000275408    UP000007755    UP000092462    UP000007798    UP000002358    UP000078541    UP000002320    UP000076858    UP000007635    UP000037069    UP000078540    UP000075809    UP000009046    UP000076408    UP000001554    UP000192220    UP000005207   

PRIDE

H9J269    Q9VIV6   

Pfam

PF04104   DNA_primase_lrg        + More
PF01956   EMC3_TMCO1
PF10215   Ost4

Interpro

IPR000086   NUDIX_hydrolase_dom        + More
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR039121   NUDT19       
IPR016558   DNA_primase_lsu_euk       
IPR007238   DNA_primase_lsu_euk/arc       
IPR002809   EMC3/TMCO1       
IPR008568   EMC3       
IPR018943   Oligosaccaryltransferase       
IPR036330   Ost4p_sf       

SUPFAM

SSF55811   SSF55811        + More
SSF103464   SSF103464       

CDD

cd07322  PriL_PriS_Eukaryotic

ProteinModelPortal

H9J269   I4DPG6   A0A194PVF5   A0A0N1I4S7   A0A2A4J515   A0A212FJW5   + More
A0A1B0FNM7   D3TL26   A0A2P8YMX7   A0A1B0A518   A0A1B0BJG1   A0A2J7PZQ0   A0A0C9R086   A0A1A9V9K8   A0A026WP48   A0A232F570   A0A0L7R6Q5   A0A1Y1L567   A0A0T6BB49   B4I5W1   A0A154P563   A0A0T6AZS1   E2B2T2   A0A088AGP6   A0A1Y1L0L0   Q9VIV6   A0A1Y1L0E2   A0A1I8MI79   E9ICM1   B4Q9Y8   B4PAZ4   B3MN59   T1PJ57   A0A2A3E9X4   A0A0P8XFP8   A0A3B0KBE1   B3NM47   A0A1L8DAT2   Q29K58   B4GWX8   A0A1I8PRM5   B4M8J6   A0A1L8DAD0   A0A0M4E5Q9   A0A1I8PRR9   A0A1W4VG39   A0A195CUC9   A0A158NQ78   A0A1Y1L0D4   B4JCV6   A0A0J7NHD2   E2A5K3   A0A1I8M2J5   A0A1I8NUH6   A0A2B4RLM4   A0A195DER3   W8C7D1   A0A3M6UHR7   A0A1I8Q5P3   F4X5I6   A0A1B0D1D1   A0A034WD54   B4MYR4   A0A1I8MFU3   A0A0P5C3X5   A0A0N7ZUY7   A0A0P6EDN2   A0A0P5LD38   A0A0P6DDT0   K7IV53   A0A0P4Y577   A0A0P5C827   A0A0P5GS02   A0A0P5KFN9   A0A0P5DRG9   A0A0P5H4F7   A0A195FQE5   A0A0P6H1A2   B0W4P1   A0A0P5YTT5   A0A162SSA6   A0A0P6CRI3   G3PVB0   A0A0L0BQ83   A0A195BJ86   A0A1Q3FJ93   A0A151WYH1   E0VQL8   A0A1I8P8E6   A0A182YMQ6   C3ZBL8   A0A0P4YTT0   C3ZIX2   B3MN62   A0A0A1XLV1   A0A2I4CKG6   I3J2E7   A0A0P5J495  

PDB

3QSJ     E-value=0.00525264,     Score=90

KEGG

101735660    K13355 nucleoside diphosphate-linked moiety X motif 19, mitochondrial [EC:3.6.1.-] | (RefSeq) nucleo

PATHWAY

04146    Peroxisome - Bombyx mori (domestic silkworm)

GO

GO:0016787   GO:0003896   GO:0016021   GO:0005524   GO:0006468   GO:0004674   GO:0006414   GO:0016020   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

PANTHER

PTHR12318   PTHR10537   PTHR13116  

Length:

212

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00458

Exp number, first 60 AAs:

0.000710000000000001

Total prob of N-in:

0.30048

outside

1  -  212

 

 

Pi

207.781343

Theta

143.580663

Tajima's D

-0.774582

CLR

0.51899

CSRT

0.184140792960352

Interpretation

Uncertain