Gene

KWMTBOMO03000  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003586

Annotation

PREDICTED:_28S_ribosomal_protein_S31?_mitochondrial_[Bombyx_mori]

Location

Bomo_Chr5(+):15460535-15465003      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.58

CDS

ATGTTAACAAGACTCAAGTTCAGAAAAGATTTAAGGGTAATCGCACGGTGTTTGTCAGACAAATCCAAGGATAATGATGGGAAGCCTCAAGTAATTCAAGATGCCAAGAAGAAAACCGTAAAAAATGATCCGGCTACTGAAAAGATTCAAGAACTGTTGAAAAGCATGATGGCACCTCCAAAAATAAGCGAAGCTGAGTACAGAGAAAAATTCGCAACATCTCCAGATACTAGGCGAAGTAAACAAGTGGACGAAATAGAAGTGAAGACTGAAAAAATAGAGGAGAGCATCACAAAAGCTGCTACTGATGTTGCTCAAGCTATAGGGGGTGATGTCAAACAAACAGAAGCAGAGCTTCTATCTCGTGTACTTGGGAAAATCAATCAAACTTCTACCACTCTCAGTGACCTTTTAGTTGGGATGAAGGTAGACAGAACAGTAGAACCTGATGAAGTCCAAAAAAAACCAGATACTAGAGAGCAGCAAGTGAAAAGACTTGTAAGCAAAGCAAAGACAACTGAAGCTTCTCCTACTAGATATTCACAACGGAAATCAGCATATGTTCCCAATGACAGGACAAGGCAAGGAAGAGACAGTAACAGAAGTGGTACTCCACAAATCACAGAAATTGATATATTTGGTGGTGAGCCACTTGGTATATTCAAGACAACAGAACCAAACTATGGAACAAAACTGGATGTTTGGGAGAACCTAAAAAAACGAGAGCTAAGTTTAGCAACTGCACAGCCCCCGGCCAATTATTTCCAGAAAATTATCCTGTGGACCAATCAGGGTAAAGTTTGGAAATTCCCCATTGACAACGAGCAAGGGCTGGAAGAGGAACAAAAGATACATTTCTCCGAGCACATATTTTTGGACACACATCTAGAAGACTGGTGCCCGAAGAAAGGACCGATACGCCACTTCATGGAGCTCGTCTGCGTCGGACTCTCAAAGAATCCATTTTACACCGCCCAGGAGAAAAAAGAACACATCATGTGGTACAAAGACTATTTTGTAACGAAAAAGGATTTATTGACCGAAGTAGGAGCTTGGGATCTACCTAACAGCAACAAAGAGGCGTCGGTCTAA

Protein

MLTRLKFRKDLRVIARCLSDKSKDNDGKPQVIQDAKKKTVKNDPATEKIQELLKSMMAPPKISEAEYREKFATSPDTRRSKQVDEIEVKTEKIEESITKAATDVAQAIGGDVKQTEAELLSRVLGKINQTSTTLSDLLVGMKVDRTVEPDEVQKKPDTREQQVKRLVSKAKTTEASPTRYSQRKSAYVPNDRTRQGRDSNRSGTPQITEIDIFGGEPLGIFKTTEPNYGTKLDVWENLKKRELSLATAQPPANYFQKIILWTNQGKVWKFPIDNEQGLEEEQKIHFSEHIFLDTHLEDWCPKKGPIRHFMELVCVGLSKNPFYTAQEKKEHIMWYKDYFVTKKDLLTEVGAWDLPNSNKEASV

Description

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Similarity

Belongs to the tumor necrosis factor family.
Belongs to the eIF-1A family.

Uniprot

H9J249   A0A2H1W5T2   A0A2A4JFP0   A0A212FGX7   A0A0N1ID54   A0A194PQ63   + More
A0A3B0JSX2   A0A1W4WL93   Q9VUX1   Q95S88   B4HIM5   D6WRW9   B4QLS6   Q29D95   A0A1W4VMQ6   B4ITV3   B4H7T1   B3M9T7   A0A1S4FUL9   Q16NN5   A0A2J7PF71   V5GTE1   B3NDQ3   A0A067RLY8   A0A1Q3F7T8   A0A182FB78   W5JWZ5   A0A182Y9I1   A0A182QVY6   A0A1Y1LIN9   A0A182RVG5   T1DRM6   A0A182ISX8   B4IYF8   A0A182H366   A0A0K8W8G9   B0WW32   A0A0V0G7E2   Q7PZI5   A0A182SMT9   B4LG31   A0A034VF70   A0A182WE11   J9JND0   B4N729   A0A182L565   A0A2S2NMK0   A0A1B0CK83   A0A1S4H7V3   A0A182HHM0   A0A2S2QWC8   A0A2H8TSA4   A0A084WII3   A0A182PCA0   W8BQ63   A0A182XJR3   A0A0L7L103   A0A182N2S8   A0A182VBH5   A0A182M6N4   A0A182TNC0   A0A1I8NU28   U5ESY9   A0A0A9Z6Q4   A0A182JPY0   A0A0A1XRU9   A0A026WNK4   T1PG90   B4KYG4   A0A1B6IPQ4   A0A1J1HKJ6   A0A1B6GL32   A0A146M7M0   A0A1D2NMA1   A0A1L8E0A9   A0A151J9H9   A0A1L8E042   A0A0P4VMF6   A0A232F936   K7J1N7   A0A1B6LRN0   A0A1A9V584   A0A158NZ52   D3TMC7   A0A1B0AD54   A0A151WWS9   A0A195CW05   E2A636   A0A1A9YIL7   A0A0L0CJT6   A0A1B0D3Q2   A0A1A9WDH7   A0A1B0AQR0   A0A226DP35   A0A195F7C2   A0A2R7WMY3   A0A293LF05  

Pubmed

19121390    22118469    26354079    10731132    12537568    12537572    + More
12537573    12537574    16110336    17569856    17569867    26109357    26109356    17994087    18362917    19820115    22936249    15632085    17550304    17510324    24845553    20920257    23761445    25244985    28004739    26483478    12364791    25348373    20966253    24438588    24495485    26227816    25401762    25830018    24508170    30249741    25315136    26823975    27289101    27129103    28648823    20075255    21347285    20353571    20798317    26108605   

EMBL

BABH01007429    ODYU01006498    SOQ48387.1    NWSH01001631    PCG70639.1    AGBW02008594    + More
OWR52963.1    KQ461187    KPJ07345.1    KQ459597    KPI95103.1    OUUW01000002    SPP76799.1    AE014296    AY089653    AAF49552.1    AAL90391.1    AY060911    AAL28459.1    CH480815    EDW41655.1    KQ971351    EFA06593.1    CM000363    CM002912    EDX10625.1    KMY99894.1    CH379070    EAL30519.1    CH891734    EDW99816.1    CH479219    EDW34721.1    CH902618    EDV40128.1    CH477816    EAT35950.1    NEVH01026085    PNF14974.1    GALX01001047    JAB67419.1    CH954178    EDV52186.2    KK852595    KDR20607.1    GFDL01011472    JAV23573.1    ADMH02000120    ETN67714.1    AXCN02001087    GEZM01054675    JAV73493.1    GAMD01001864    JAA99726.1    CH916366    EDV97631.1    JXUM01106761    KQ565082    KXJ71360.1    GDHF01004816    JAI47498.1    DS232137    EDS35864.1    GECL01002222    JAP03902.1    AAAB01008986    EAA00689.4    CH940647    EDW70430.1    GAKP01018769    JAC40183.1    ABLF02018654    CH964168    EDW80168.1    GGMR01005739    MBY18358.1    AJWK01015894    APCN01002428    GGMS01012866    MBY82069.1    GFXV01005262    GFXV01006007    MBW17067.1    MBW17812.1    ATLV01023934    KE525347    KFB50027.1    GAMC01005388    JAC01168.1    JTDY01003715    KOB69105.1    AXCM01001233    GANO01003003    JAB56868.1    GBHO01004561    GBRD01008465    JAG39043.1    JAG57356.1    GBXI01000662    JAD13630.1    KK107151    QOIP01000003    EZA57251.1    RLU24390.1    KA647827    AFP62456.1    CH933809    EDW18775.1    GECU01018826    JAS88880.1    CVRI01000006    CRK88050.1    GECZ01006613    JAS63156.1    GDHC01003200    JAQ15429.1    LJIJ01000006    ODN06408.1    GFDF01001988    JAV12096.1    KQ979403    KYN21725.1    GFDF01001971    JAV12113.1    GDKW01002624    JAI53971.1    NNAY01000619    OXU27364.1    GEBQ01013589    JAT26388.1    ADTU01003818    CCAG010002173    EZ422579    ADD18855.1    KQ982684    KYQ52343.1    KQ977220    KYN04815.1    GL437108    EFN71095.1    JRES01000303    KNC32510.1    AJVK01011006    JXJN01002008    LNIX01000015    OXA46594.1    KQ981768    KYN35969.1    KK854934    PTY19785.1    GFWV01002592    MAA27322.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000268350    + More
UP000192223    UP000000803    UP000001292    UP000007266    UP000000304    UP000001819    UP000192221    UP000002282    UP000008744    UP000007801    UP000008820    UP000235965    UP000008711    UP000027135    UP000069272    UP000000673    UP000076408    UP000075886    UP000075900    UP000075880    UP000001070    UP000069940    UP000249989    UP000002320    UP000007062    UP000075901    UP000008792    UP000075920    UP000007819    UP000007798    UP000075882    UP000092461    UP000075840    UP000030765    UP000075885    UP000076407    UP000037510    UP000075884    UP000075903    UP000075883    UP000075902    UP000095300    UP000075881    UP000053097    UP000279307    UP000095301    UP000009192    UP000183832    UP000094527    UP000078492    UP000215335    UP000002358    UP000078200    UP000005205    UP000092444    UP000092445    UP000075809    UP000078542    UP000000311    UP000092443    UP000037069    UP000092462    UP000091820    UP000092460    UP000198287    UP000078541   

PRIDE

H9J249    Q9VUX1    Q95S88   

Pfam

PF15433   MRP-S31        + More
PF00229   TNF
PF01176   eIF-1a

Interpro

IPR026299   MRP-S31        + More
IPR008983   Tumour_necrosis_fac-like_dom       
IPR006052   TNF_dom       
IPR012340   NA-bd_OB-fold       
IPR001253   TIF_eIF-1A       
IPR018104   TIF_eIF-1A_CS       
IPR006196   RNA-binding_domain_S1_IF1       

SUPFAM

SSF49842   SSF49842        + More
SSF50249   SSF50249       

Gene 3D

2.60.120.40    

CDD

cd05793  S1_IF1A

ProteinModelPortal

H9J249   A0A2H1W5T2   A0A2A4JFP0   A0A212FGX7   A0A0N1ID54   A0A194PQ63   + More
A0A3B0JSX2   A0A1W4WL93   Q9VUX1   Q95S88   B4HIM5   D6WRW9   B4QLS6   Q29D95   A0A1W4VMQ6   B4ITV3   B4H7T1   B3M9T7   A0A1S4FUL9   Q16NN5   A0A2J7PF71   V5GTE1   B3NDQ3   A0A067RLY8   A0A1Q3F7T8   A0A182FB78   W5JWZ5   A0A182Y9I1   A0A182QVY6   A0A1Y1LIN9   A0A182RVG5   T1DRM6   A0A182ISX8   B4IYF8   A0A182H366   A0A0K8W8G9   B0WW32   A0A0V0G7E2   Q7PZI5   A0A182SMT9   B4LG31   A0A034VF70   A0A182WE11   J9JND0   B4N729   A0A182L565   A0A2S2NMK0   A0A1B0CK83   A0A1S4H7V3   A0A182HHM0   A0A2S2QWC8   A0A2H8TSA4   A0A084WII3   A0A182PCA0   W8BQ63   A0A182XJR3   A0A0L7L103   A0A182N2S8   A0A182VBH5   A0A182M6N4   A0A182TNC0   A0A1I8NU28   U5ESY9   A0A0A9Z6Q4   A0A182JPY0   A0A0A1XRU9   A0A026WNK4   T1PG90   B4KYG4   A0A1B6IPQ4   A0A1J1HKJ6   A0A1B6GL32   A0A146M7M0   A0A1D2NMA1   A0A1L8E0A9   A0A151J9H9   A0A1L8E042   A0A0P4VMF6   A0A232F936   K7J1N7   A0A1B6LRN0   A0A1A9V584   A0A158NZ52   D3TMC7   A0A1B0AD54   A0A151WWS9   A0A195CW05   E2A636   A0A1A9YIL7   A0A0L0CJT6   A0A1B0D3Q2   A0A1A9WDH7   A0A1B0AQR0   A0A226DP35   A0A195F7C2   A0A2R7WMY3   A0A293LF05  

PDB

6NF8     E-value=8.18061e-30,     Score=325

KEGG

101736059    K17410 small subunit ribosomal protein S31 | (RefSeq) 28S ribosomal protein S31, mitochondrial

GO

GO:0003735   GO:0005763   GO:0005164   GO:0016021   GO:0006955   GO:0032543   GO:0006412   GO:0003743   GO:0016020   GO:0005515   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

PANTHER

PTHR13231   PTHR21668  

Length:

363

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00057

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02584

outside

1  -  363

 

 

Pi

338.57327

Theta

183.72779

Tajima's D

2.473907

CLR

0.488494

CSRT

0.942602869856507

Interpretation

Uncertain