Silkworm Genome Informatics Database

Gene

KWMTBOMO02999

Pre Gene Modal

BGIBMGA003585

Annotation

PREDICTED:_TNFSF5_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):15447995-15455911 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.008 Nuclear Reliability : 1.492 PlasmaMembrane Reliability : 1.381

CDS

ATGGACGTTGAAAGGAAGATACATTTAGGGGAAGGTGTTCCATTAAACTCGTCAGGTGCAAATATATTTTTGAACACCGGTAAAAGCAAAGATGCAAAACTAGGCTCTCGAGATTGCCCAGTTATACATCTAAAAACAGAGAAACCGTCAGACCTTGGTGTACATATAAATACTACATTCTCGATAGCGTCTTCCAAGAAAATAAAGCTTTTGTTCATTTTAAATTTTATGCTAAGTGTCATATGTATGGTTCTTAGTTGTTCCATAGCTTTCTATTATTGGAATGAAATGATTTTAATGAGGAGGCAACTGGATATGATAAAAGACCATTTCATGTTTCAAAACATAGGACATGAGACACTTGTGCAGAGTGCTCTGGTTGCCCCAAAATCACAGTCCTCGGACAGAGAACCCAGAATGAACAATGAGAATGCCAAGAAATACTTTGTGGAGGATCTTGGTGAGGACATGCTACTTGTAGATTCAAGAAAGAAAAACATGACTCAAGATATTCTTGATAACAATATCTCAGTCCTACAAAAAGATTTACTGGTTGTCCATTTCAACGGAGCATACCAGGAGAAAAATATGAGTACGCAATCATTAATGGGTCCTTGGGTTCGAGACACCGAAGTCTCTTCTAAACAGAGCGACGAGAAAATCAAACTGAACAGCGACTTCAACTACGTAACGATTAATGAGAGCGGACTTTATTTAGTTTATACACAAGTGGTGTACTTAACTAAAGAGTCGAACTGTTACTTCGTTTGGGCCCACCAACCGGACAAGGAGCCCCGGCTGCTGTCCACGTGCGCCACGGGTGACGACTCCAGCCGGCGGCCGATAGCCAAGTCCCAGATGTCGTGCTCGGTGCAGACCGTCGCGAGACTGTACAAGGGCGACACCGTCAATATCGCTCAACGTGAACCCAACAGGAGGGTGTGGCTGCGACCCGGCTACTCATACTTCGGCTTCGTGAAACTTAGTTCCTAA

Protein

MDVERKIHLGEGVPLNSSGANIFLNTGKSKDAKLGSRDCPVIHLKTEKPSDLGVHINTTFSIASSKKIKLLFILNFMLSVICMVLSCSIAFYYWNEMILMRRQLDMIKDHFMFQNIGHETLVQSALVAPKSQSSDREPRMNNENAKKYFVEDLGEDMLLVDSRKKNMTQDILDNNISVLQKDLLVVHFNGAYQEKNMSTQSLMGPWVRDTEVSSKQSDEKIKLNSDFNYVTINESGLYLVYTQVVYLTKESNCYFVWAHQPDKEPRLLSTCATGDDSSRRPIAKSQMSCSVQTVARLYKGDTVNIAQREPNRRVWLRPGYSYFGFVKLSS

Similarity

Belongs to the tumor necrosis factor family.

Uniprot

A0A2A4JG03 A0A2H1W5Q4 A0A1E1W729 E9JEJ0 A0A0L7L1G3 A0A212EVG7 + More
A0A194PP69 A0A0N1ID54 A0A1B6FYT7 A0A1B6KA82 A0A1B6GKQ2 A0A1B6MIB1

Pubmed

19121390 21040523 26227816 22118469 26354079

EMBL

NWSH01001631 PCG70638.1 ODYU01006498 SOQ48388.1 GDQN01008248 JAT82806.1 + More
BABH01007429 BABH01007430 GQ426307 ADM32533.1 JTDY01003715 KOB69104.1 AGBW02012195 OWR45469.1 KQ459597 KPI95102.1 KQ461187 KPJ07345.1 GECZ01014458 JAS55311.1 GEBQ01031626 JAT08351.1 GECZ01006737 JAS63032.1 GEBQ01004324 JAT35653.1

Proteomes

UP000218220 UP000005204 UP000037510 UP000007151 UP000053268 UP000053240 + More

PRIDE

E9JEJ0

Pfam

PF00229 TNF + More
PF15433 MRP-S31

Interpro

IPR006052   TNF_dom        + More
IPR021184   TNF_CS
IPR008983   Tumour_necrosis_fac-like_dom
IPR026299   MRP-S31

SUPFAM

SSF49842 SSF49842

Gene 3D

2.60.120.40

ProteinModelPortal

A0A2A4JG03 A0A2H1W5Q4 A0A1E1W729 E9JEJ0 A0A0L7L1G3 A0A212EVG7 + More
A0A194PP69 A0A0N1ID54 A0A1B6FYT7 A0A1B6KA82 A0A1B6GKQ2 A0A1B6MIB1

KEGG

100862755 no KO assigned | (RefSeq) TNFSF5

GO

GO:0005164 GO:0005615 GO:0006955 GO:0005125 GO:0016021 GO:0016020 GO:0005763 GO:0003735 GO:0005515 GO:0051103 GO:0003677 GO:0006281 GO:0048384

PANTHER

PTHR13231

Length:

330

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.0789599999999

Exp number, first 60 AAs:

0.01465

Total prob of N-in:

0.95124

inside

1 - 71

TMhelix

72 - 94

outside

95 - 330

Pi

242.934225

Theta

150.411408

Tajima's D

1.391012

CLR

0

CSRT

0.757962101894905

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics