SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02997
Pre Gene Modal
BGIBMGA003615
Annotation
PREDICTED:_uncharacterized_protein_LOC106129803_[Amyelois_transitella]
Location
Bomo_Chr5(-):15338346-15346725      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.561
 

Sequence

CDS
ATGAATTTAACGTGGATAATTGCTTTGGTCGCGTGCACTGTGGCGTGTGCCAACAGTGAGCGCGGCGGTTCTTCACTCCGGGGAGCCCTTGAAGCCTTACAACGTCGTCAGCGAGGCCGCACACGTGGCCCTATCATACCAGAACCAGACTACGATGCCCTGTATGAGTTTATACCGCCTCAAGCATACCCAGATCAAGATTACCCCATGGATATAGAAGACCTTGATGAAGAACCCAATTCCAAATATATGGTTAAATTACTCGATGAAAACGACAGACCTCCGGGCGCTTACGAATATAAAGTGATTAGAAAGAAGAACTTTCCTGAGTCATCCTCAAAAAAGGAATCGGCATTCCGCGAAAGAGCTCAAAGTCCAAGCAATGAAAAACTACGTGATCTATTCATGGAGAAAGGAGAAGCTGAAAACAAAAACGATCCTTCAGATATCAACAAGAATGATGCTGAATACGCATTATTGCTCGGAGAACTGTGGTCAAAATACAAATACAACAAAAATCACCCTAAGAATACGGAAGCTATACCGCAAGGTGTCGTAAAGCTATACAAGGATAAAGTTGTCAAAAAACGATACCCTGATAATTGGGGACCCATTGCCTTTAAAAAGAAACGCAGTTCGAATTCAGAAACAAATCAGAGGATTTTAACCGAATACGATGAGGGAAAACAGAGACCAGTCACTGTGGACCCCATTTATAATGGCTATAATATTGACGATGACGATAAGGACGACTTACTTGAGGAATACGCAATTGCTTTTCAACCATTAGATGACGACAATTTGTCTGATTTGGCTGATGATGATCAGTATCCCTATGATAACGTAGAGAAACGATTCCCGGTCTCGAAACGAAGCAGCGGTCCGTATGATTTCGGAAATCAAAACAAACAATTCACCCAAAATCAAAATAAGCGAGAAACGTCGAAGGCATTTCGAAATACCGGTACTGATCCTAGGGTCATAAAAGATTTATCAAAAATTTTTGGGGAGCAGGACATAATTAAAAACCCAGTTAAACGTAGCAGTGACAACATAGAATTACATGAAACCAAACCACCTATATTACCTATACCACACAACCATACTCTACTGGATAATTCGTCGAAACAAGATGACGATAGTCACGAACATCAAGGACATAACATGCACCATCCTGGAACATCCGGTAAAGAAGCAGAACCCGACAACTCTACTGATGACCATAACGATGGAGAAAGTGAAAAGCCAATTACAGTTAGAAAGAAGTCTATCGATTGGTCCGACTACTTCGGTATCGATAAGCGTAACAAAAAGACAAAAAAATTCGTTAACGATTTAACTCAAGATCGTTTAAGAAAACAATACTTTAACACGTTCAATAAGGAAGTCATTTATCCATTAACAACGTTTCGCAAACACGACAAAGTGAAGAGAAACTTTATTCAGCCTAATTCTAACGAAGAAACAGAAATACAGATCGATCGCACACAAGCTATTGCGCTTAAGAATGATAATAAAAGAATTGCAAAGGACAACGACTCCAAATTAGATAACATTGACAAGAAACTAAGGAACATGGAAGGTTTGATTGTTGATGAAGCCTTACACTATTCCAATGGCGGGGAAGAACTGGATTCTAAGGAAGAACAAGAAATGAAAGAGAAGCTGCTATCCCGTTTGGCTGCAGCCTATAGCTTGGAAAAAATGAGAAAAGCCTTAAAAGAATTTAAGCAAAGCCTACAGACACAGAAGCTAACAGCATCCGCCATTCCGGTTGAAGAAGGCAAAGCTAAAAGGGTTGCTGTAAAAAAAGAGCTTTTGGACAATGAAATATCGGCATCAAACAAAAACCAGCTAAACGATGACTTTGAAGATGAACAAGGCGCTGGACATTACTTAAATGGAAAAATCGACGAACAATTTTCAGAGGGATACATGGGCGGTAGCGGCAGGCATCGGGTCCCGGTAATCTCAACAGGTGGACCATCTGGATCGTGCCCTGTGTTAGCAAAAATTATACAACGATGCCGTGGAGTAGACTTGCTGGCTGGTGACAGAGGCCAGTTGTTCCTCCCCCTTTGCAGTCTACATCAAATCTGTTATTTATGCGGCGAAGCACCACCTACAACCTGCGACTTAGTATTTATATCTGAAGCTGACACTGCATGTGATGGAGATTCGAGCTGCCAACGAGCAGCTAGATCTGCGCTCATGGCTCTTCGAGAACTACATGACAATTTGGCCGACGAAATGGATGGAGAATGCGAGGCAAGCCCCTGTCTCCCGGCAACCCTTAAATTAAACCTCGGCTGGCAGAGAGCCCTTCGACGATAG
Protein
MNLTWIIALVACTVACANSERGGSSLRGALEALQRRQRGRTRGPIIPEPDYDALYEFIPPQAYPDQDYPMDIEDLDEEPNSKYMVKLLDENDRPPGAYEYKVIRKKNFPESSSKKESAFRERAQSPSNEKLRDLFMEKGEAENKNDPSDINKNDAEYALLLGELWSKYKYNKNHPKNTEAIPQGVVKLYKDKVVKKRYPDNWGPIAFKKKRSSNSETNQRILTEYDEGKQRPVTVDPIYNGYNIDDDDKDDLLEEYAIAFQPLDDDNLSDLADDDQYPYDNVEKRFPVSKRSSGPYDFGNQNKQFTQNQNKRETSKAFRNTGTDPRVIKDLSKIFGEQDIIKNPVKRSSDNIELHETKPPILPIPHNHTLLDNSSKQDDDSHEHQGHNMHHPGTSGKEAEPDNSTDDHNDGESEKPITVRKKSIDWSDYFGIDKRNKKTKKFVNDLTQDRLRKQYFNTFNKEVIYPLTTFRKHDKVKRNFIQPNSNEETEIQIDRTQAIALKNDNKRIAKDNDSKLDNIDKKLRNMEGLIVDEALHYSNGGEELDSKEEQEMKEKLLSRLAAAYSLEKMRKALKEFKQSLQTQKLTASAIPVEEGKAKRVAVKKELLDNEISASNKNQLNDDFEDEQGAGHYLNGKIDEQFSEGYMGGSGRHRVPVISTGGPSGSCPVLAKIIQRCRGVDLLAGDRGQLFLPLCSLHQICYLCGEAPPTTCDLVFISEADTACDGDSSCQRAARSALMALRELHDNLADEMDGECEASPCLPATLKLNLGWQRALRR

Summary

Similarity
Belongs to the tumor necrosis factor family.
Uniprot
H9J278   A0A2H1W915   A0A2A4JGF3   A0A0L7LNZ2   A0A1E1WEY9   A0A0N0PAY0   + More
A0A212EVI5   A0A2R7WE13   A0A182MP81   A0A182QBX6   A0A1B0A9A9   A0A1A9UIY2   A0A034WPZ7   A0A0K8VR79   A0A0K8VSH9  
Pubmed
19121390    26227816    26354079    22118469    25348373   
EMBL
BABH01007434    ODYU01007111    SOQ49595.1    NWSH01001547    PCG70899.1    JTDY01000442    + More
KOB77152.1    GDQN01005492    JAT85562.1    KQ461187    KPJ07341.1    AGBW02012195    OWR45471.1    KK854687    PTY17903.1    AXCM01004837    AXCN02000574    AXCN02000575    GAKP01001286    JAC57666.1    GDHF01010932    JAI41382.1    GDHF01010490    JAI41824.1   
Proteomes
UP000005204    UP000218220    UP000037510    UP000053240    UP000007151    UP000075883    + More
UP000075886    UP000092445    UP000078200   
PRIDE
H9J278   
Pfam
PF00229   TNF
Interpro
IPR038875   PLA2_conodipine-M_a        + More
IPR008983   Tumour_necrosis_fac-like_dom       
IPR021184   TNF_CS       
IPR006052   TNF_dom       
SUPFAM
SSF49842   SSF49842       
Gene 3D
2.60.120.40    
ProteinModelPortal
H9J278   A0A2H1W915   A0A2A4JGF3   A0A0L7LNZ2   A0A1E1WEY9   A0A0N0PAY0   + More
A0A212EVI5   A0A2R7WE13   A0A182MP81   A0A182QBX6   A0A1B0A9A9   A0A1A9UIY2   A0A034WPZ7   A0A0K8VR79   A0A0K8VSH9  

Ontologies

KEGG
101743232    no KO assigned | (RefSeq) uncharacterized LOC101743232
GO
GO:0016021   GO:0006955   GO:0005125   GO:0005615   GO:0005164   GO:0005515   GO:0006281   GO:0007018   GO:0008017   GO:0003909   GO:0051103   GO:0003677   GO:0048384  
PANTHER
PTHR37687  

Topology

SignalP
Position:   1 - 19,         Likelihood:  0.976471
 
 
Length:
777
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0702499999999999
Exp number, first 60 AAs:
0.06847
Total prob of N-in:
0.00359
outside
1  -  777
 
 

Population Genetic Test Statistics

Pi
250.699406
Theta
188.808392
Tajima's D
1.064362
CLR
0.164631
CSRT
0.675366231688416
Interpretation
Uncertain
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