Gene

KWMTBOMO02994

Pre Gene Modal

BGIBMGA003618

Annotation

PREDICTED:_deoxyribodipyrimidine_photo-lyase_[Bombyx_mori]

Location

Bomo_Chr5(-):15312810-15317645      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.285

CDS

ATGCTTCATATTCCACTTGTAAATCAATTTAATACGGTTTTAAAACGCTATTCTGTATTCATAATGGCATCGGCTTCAAAGAAACGCAAAACTTCCATTCCTATGGCATTAGGTAAAAGCAATGAAAGTACAAGCACCATTGAAGAGTTTCTGAAAAAACTACAAAAAAAGCGCGAAGAAACGGCTGAGTCTATTTTGAACTTTGATTTCAACAAAAAACGCATTCGAATAATATCTCAAGAACAAATTATACCTGACGATTGCGATGGTGTTGTATACTGGATGTCTAGAGACAGCCGTGTTCAGGATAATTGGGCTTTCCTTTTTGCACAAAAACTGGCCTTGAAAAACGAAGTACCGCTTCATGTATGTTTTTGTTTAATTTCGAAGTATCTGGATGCGTCCTTGCGACAATTTCATTTCCTTGTAAAAGGACTAGAAAAAGTAGCTGCAGAGTGTAAGAAACTAAACATACAATTCCATTTATTAGAAGGTAGTGGTGCGGAAGTGTTACCTCAATGGGTAGTAGATCATAATATTGGTGCGGTTGTGTGTGATTTCAATCCACTTAGGGTCCCTATGGGCTGGTTGGATGGAGTAAAGGGAAAACTTAGGAAAGATGTGCCTTTAATTCAGGTAGACACTCACAATGTAGTTCCATGTTGGGTGGCATCAGACAAACAGGAGTATTCTGCAAGGACAATCAGGAATAAAATTAATTCAAAACTTGATGAGTTTCTCACAGAATTCCCCCCAGTTATAAAACATCCATATTCCAGCAAATTTGAAGCAGAGCCCATTGACTGGCATGAAGCCATTGAGACGAGAGAAGCAGATAAATCAGTTGGTCCTGTTGATTGGGCTAAGCCTGGTTATGATGAAGCTGTGAAAATGATGAAAAGTTTTCTTGACAAGAGATTAAACATATATGCCAGTAAAAGGAATGACCCAACTCAGGATGCCCTGAGCAATCTCTCACCTTGGTTCCACTTTGGTCAAATATCAGTACAAAGGGTAGCCCTATGTGTACAAGAATACAAATCGAAATTTACTGAAAGTGTGAATGCATTTCTAGAAGAAGCTATAGTAAGGCGAGAACTAGCTGACAACTTTTGTTTCTATTGTGAACATTACGACAGTGTAAAGGGTGCTAGTGCGTGGGCCCAAAAAACTTTGGATGATCACAGAAAAGACAAGAGAACTCACATTTATACTCTAGAAAAACTTTCTAAAGGTGAAACTCATGATGACTTGTGGAATTCGGCTCAGCTACAACTTGTTAAAGAGGGCAAAATGCATGGCTTTTTAAGAATGTATTGGTGTAAGAAAATATTGGAATGGACTCCTACTCCGGAGGATGCTCTTAAATATGGAATATATTTGAACGACCACTATAGTATCGATGGGAGAGATCCAAGTGGATTTGTAGGCTGCATGTGGTCGATATGCGGCATCCACGACCAAGGCTGGGCAGAGCGCGCCGTCTTCGGTAAAATTAGATACATGAATTACGACGGGTGTAAGCGTAAGTTCGACATCAAAGCCTTCATTGCCAGGTACGGAGGGAAGGTACACAAATATGTACCTAAAAAGTAG

Protein

MLHIPLVNQFNTVLKRYSVFIMASASKKRKTSIPMALGKSNESTSTIEEFLKKLQKKREETAESILNFDFNKKRIRIISQEQIIPDDCDGVVYWMSRDSRVQDNWAFLFAQKLALKNEVPLHVCFCLISKYLDASLRQFHFLVKGLEKVAAECKKLNIQFHLLEGSGAEVLPQWVVDHNIGAVVCDFNPLRVPMGWLDGVKGKLRKDVPLIQVDTHNVVPCWVASDKQEYSARTIRNKINSKLDEFLTEFPPVIKHPYSSKFEAEPIDWHEAIETREADKSVGPVDWAKPGYDEAVKMMKSFLDKRLNIYASKRNDPTQDALSNLSPWFHFGQISVQRVALCVQEYKSKFTESVNAFLEEAIVRRELADNFCFYCEHYDSVKGASAWAQKTLDDHRKDKRTHIYTLEKLSKGETHDDLWNSAQLQLVKEGKMHGFLRMYWCKKILEWTPTPEDALKYGIYLNDHYSIDGRDPSGFVGCMWSICGIHDQGWAERAVFGKIRYMNYDGCKRKFDIKAFIARYGGKVHKYVPKK

Uniprot

H9J281   A0A2A4JGI9   A0A0N1I4S2   A0A194PQ52   A0A194PVE0   A0A0N1PGJ5   + More
A0A182NZR1   A0A182H124   A0A182HPD9   Q17KA3   A0A084WCU3   A0A182TDL1   A0A182V452   A0A182X0X1   A0A182LB47   B0WAC3   A0A182WMB2   A0A1Q3F590   A0A182FY44   Q7Q9T5   A0A1B6H369   W5J446   A0A182NLW6   A0A182LSK5   A0A182RUX5   A0A182QNV4   A0A182YJ19   A0A1B6KN13   F6W9G4   A0A1B6EB20   A0A336L2S2   Q3C2L7   A0A336LWB1   A0A182JL00   A0A1J1J7Y8   A0A0L0BRI0   A0A1S3H867   A0A0A9WTY5   A0A2S2QTI6   V4A167   B3MG96   A0A0P8Y6L2   A0A0P4WEL0   A0A075F4M7   B4KQ29   A0A2S2NFH5   A0A2I0U149   A0A210PRW9   Q24443   Q28ZN6   J9K3D6   A0A0N1INB4   T1L328   B4GH10   B4QET3   A0A0A1XCX0   A1Z757   B4HR84   Q7JY97   K7J6K2   J3S999   A0A1W4VZF9   T1HKC6   A0A3B0J6V3   A0A1I8MLY4   A0A0K8RWA2   B3N9D8   A0A2A3EEH9   K1PPR1   A0A1I8MLY6   Q26373   B4J848   A0A0B7AUQ3   A0A232EFC2   A0A0K8V113   B4ME10   A0A1V4KMC1   W8C169   A0A088ARG8   A0A2B4RXJ6   B4P244   A0A0C9Q5W8   H9G6X4   A0A023F3G0   A0A194PQS4   A0A034V6B8   F6Q9E0   A0A0M4E6S9   A0A034V448   A0A1V4KMH6   A0A2I0LMR4   Q28464   A0A3M7QL57   B4MQY9   E9HAM9   G3VYP1   S4R979   A0A0P6JIK5   A0A151MZN9   A0A0N8CYE9  

Pubmed

19121390    26354079    26483478    17510324    24438588    20966253    + More
12364791    14747013    17210077    20920257    23761445    25244985    20431018    16302973    26108605    26383154    25401762    23254933    17994087    24568948    28812685    7813451    15632085    25830018    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    20075255    23025625    25315136    25727380    22992520    7526199    28648823    24495485    17550304    21881562    25474469    25348373    17495919    23371554    7937136    30375419    21292972    21709235    22293439   

EMBL

BABH01007436    NWSH01001547    PCG70896.1    KQ461187    KPJ07337.1    KQ459597    + More
KPI95093.1    KPI95095.1    KPJ07339.1    JXUM01102357    KQ564721    KXJ71848.1    APCN01002982    CH477227    EAT47082.1    ATLV01022885    KE525337    KFB48037.1    DS231870    EDS41013.1    GFDL01012315    JAV22730.1    AAAB01008900    EAA09350.3    GECZ01000640    JAS69129.1    ADMH02002165    ETN58118.1    AXCM01004675    AXCN02000947    GEBQ01027138    JAT12839.1    AAMC01069403    AAMC01069404    AAMC01069405    AAMC01069406    AAMC01069407    GEDC01009216    GEDC01002224    JAS28082.1    JAS35074.1    UFQS01001398    UFQT01001398    SSX10693.1    SSX30375.1    BC133744    AB175838    AAI33745.1    BAE46749.1    UFQT01000246    SSX22346.1    CVRI01000075    CRL08549.1    JRES01001578    KNC21824.1    GBHO01032723    JAG10881.1    GGMS01011852    MBY81055.1    KB202656    ESO88680.1    CH902619    EDV37799.1    KPU77038.1    GDRN01063567    JAI64957.1    KJ438858    AIE57497.1    CH933808    EDW08131.2    GGMR01003249    MBY15868.1    KZ506404    PKU39806.1    NEDP02005537    OWF39196.1    D26021    BAA05042.1    CM000071    EAL25577.4    ABLF02030880    KPJ07338.1    CAEY01001007    CH479183    EDW35780.1    CM000362    EDX06079.1    GBXI01005989    JAD08303.1    AE013599    AAM68868.1    CH480816    EDW46827.1    AY084133    AAF59185.1    AAL89871.1    AAZX01001310    JU175419    AFJ50943.1    ACPB03011894    OUUW01000001    SPP75572.1    GBKC01000971    JAG45099.1    CH954177    EDV59625.2    KZ288282    PBC29576.1    JH823231    EKC26192.1    S73530    AAB32328.1    CH916367    EDW01185.1    HACG01037698    CEK84563.1    NNAY01005071    OXU17043.1    GDHF01019768    JAI32546.1    CH940662    EDW58775.2    LSYS01002834    OPJ85594.1    GAMC01003687    JAC02869.1    LSMT01000243    PFX22341.1    CM000157    EDW89245.2    GBYB01009508    JAG79275.1    AAWZ02027807    AAWZ02027808    GBBI01002906    JAC15806.1    KPI95094.1    GAKP01020893    JAC38059.1    CP012524    ALC42266.1    GAKP01020898    GAKP01020896    GAKP01020895    JAC38056.1    OPJ85593.1    AKCR02000185    PKK18718.1    D31902    BAA06700.1    REGN01005786    RNA12022.1    CH963849    EDW74528.1    GL732612    EFX71237.1    AEFK01107965    AEFK01107966    AEFK01107967    GDIQ01006883    JAN87854.1    AKHW03004458    KYO29905.1    GDIP01086655    JAM17060.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000075885    UP000069940    + More
UP000249989    UP000075840    UP000008820    UP000030765    UP000075902    UP000075903    UP000076407    UP000075882    UP000002320    UP000075920    UP000069272    UP000007062    UP000000673    UP000075884    UP000075883    UP000075900    UP000075886    UP000076408    UP000008143    UP000075880    UP000183832    UP000037069    UP000085678    UP000030746    UP000007801    UP000009192    UP000242188    UP000001819    UP000007819    UP000015104    UP000008744    UP000000304    UP000000803    UP000001292    UP000002358    UP000192221    UP000015103    UP000268350    UP000095301    UP000008711    UP000242457    UP000005408    UP000001070    UP000215335    UP000008792    UP000190648    UP000005203    UP000225706    UP000002282    UP000001646    UP000002280    UP000092553    UP000053872    UP000276133    UP000007798    UP000000305    UP000007648    UP000245300    UP000050525   

PRIDE

H9J281    Q24443    A1Z757    Q7JY97    Q26373   

Pfam

PF00875   DNA_photolyase        + More
PF00929   RNase_T

Interpro

IPR006050   DNA_photolyase_N        + More
IPR032673   DNA_photolyase_2_CS       
IPR036134   Crypto/Photolyase_FAD-like_sf       
IPR014729   Rossmann-like_a/b/a_fold       
IPR036155   Crypto/Photolyase_N_sf       
IPR008148   DNA_photolyase_2       
IPR037431   REX4_DEDDh_dom       
IPR012337   RNaseH-like_sf       
IPR013520   Exonuclease_RNaseT/DNA_pol3       
IPR036397   RNaseH_sf       

SUPFAM

SSF48173   SSF48173        + More
SSF52425   SSF52425       
SSF53098   SSF53098       

Gene 3D

3.40.50.620     3.30.420.10    

CDD

cd06144  REX4_like

ProteinModelPortal

H9J281   A0A2A4JGI9   A0A0N1I4S2   A0A194PQ52   A0A194PVE0   A0A0N1PGJ5   + More
A0A182NZR1   A0A182H124   A0A182HPD9   Q17KA3   A0A084WCU3   A0A182TDL1   A0A182V452   A0A182X0X1   A0A182LB47   B0WAC3   A0A182WMB2   A0A1Q3F590   A0A182FY44   Q7Q9T5   A0A1B6H369   W5J446   A0A182NLW6   A0A182LSK5   A0A182RUX5   A0A182QNV4   A0A182YJ19   A0A1B6KN13   F6W9G4   A0A1B6EB20   A0A336L2S2   Q3C2L7   A0A336LWB1   A0A182JL00   A0A1J1J7Y8   A0A0L0BRI0   A0A1S3H867   A0A0A9WTY5   A0A2S2QTI6   V4A167   B3MG96   A0A0P8Y6L2   A0A0P4WEL0   A0A075F4M7   B4KQ29   A0A2S2NFH5   A0A2I0U149   A0A210PRW9   Q24443   Q28ZN6   J9K3D6   A0A0N1INB4   T1L328   B4GH10   B4QET3   A0A0A1XCX0   A1Z757   B4HR84   Q7JY97   K7J6K2   J3S999   A0A1W4VZF9   T1HKC6   A0A3B0J6V3   A0A1I8MLY4   A0A0K8RWA2   B3N9D8   A0A2A3EEH9   K1PPR1   A0A1I8MLY6   Q26373   B4J848   A0A0B7AUQ3   A0A232EFC2   A0A0K8V113   B4ME10   A0A1V4KMC1   W8C169   A0A088ARG8   A0A2B4RXJ6   B4P244   A0A0C9Q5W8   H9G6X4   A0A023F3G0   A0A194PQS4   A0A034V6B8   F6Q9E0   A0A0M4E6S9   A0A034V448   A0A1V4KMH6   A0A2I0LMR4   Q28464   A0A3M7QL57   B4MQY9   E9HAM9   G3VYP1   S4R979   A0A0P6JIK5   A0A151MZN9   A0A0N8CYE9  

PDB

3UMV     E-value=3.17441e-118,     Score=1089

KEGG

101736628    K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] | (RefSeq) deoxyribodipyrimidine photo-lyase

GO

GO:0003904   GO:0006281   GO:0006364   GO:0008408   GO:0003676   GO:0016021   GO:0000719   GO:0016829   GO:0007018   GO:0008017   GO:0005515   GO:0003909   GO:0051103   GO:0003677   GO:0048384  

Length:

531

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00318

Exp number, first 60 AAs:

0.0019

Total prob of N-in:

0.00052

outside

1  -  531

 

 

Pi

343.348244

Theta

198.284798

Tajima's D

2.055733

CLR

0.340918

CSRT

0.891205439728014

Interpretation

Uncertain