SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02990
Pre Gene Modal
BGIBMGA003622
Annotation
PREDICTED:_LOW_QUALITY_PROTEIN:_dynein_beta_chain?_ciliary-like_[Bombyx_mori]
Full name
Dynein beta chain, ciliary      
Location in the cell
Cytoplasmic   Reliability : 3.533
 

Sequence

CDS
ATGGACCAAGCTGGTCCTTCGTCTTCTAATCAAGACCCACGTTACGATTTCATCGGTTCTTATGTGGTTAAGTCTTTGAAATTGAAGCCAGAGAAATGGATGCGTGTGCTTACTATAGAAGAGCACAGGTCCACTTTAAGAGACTTCGTGGACAAGCCATTTCCTCTTCTCCTGGTTGTGGTTTTAACTCACGCAGCACAGCTGGTACCCGTCATTTCGTTTCCATGCTACCTGAAAAACAAAGCCGTCTATTTCGTCAAAAAGAAGGCAGATGCCATTCCTAAAGAGAATTGCGCTGAAATGGTAGTTTTTGGCGACTTAGCTCCGAGGCTCATAGATGAACTGGCAGCATTAGTAGATGAAGTATTCGTACCTTTACTCTCTAATCCGCTGAATCACGAAGGATGGCCGCTAGTCGTCTCTCAAGATATCCTCAAGCAAATACACAATTTAAAAAGTACCGTGTATGAGGTAAAAGGTAAAGTAAATGGTCAAACGGTCTTACCTATGCCCGTTGGAGTGGAATTGGTTCACGAAGCGGAAAAGGAAATTCTGAAAGGCAAAGAAGTGGATCTTTACTTGAAGAGTGCAATTGAAGGTGTAGTTATCAAATGGGCACAACAAATCAATGACGTAATGATGGAAGATTCGGGGTCTGCCTTCGAGAATGGACAGAATCCGTTGCCTTCTGTAGCTTTAGCGGAAGCTAGGGAAATTGATTTGTACCTCAGAACATTGGAAAAGCATTTCCAAGCATTGGAAGATACAGACTTTATGGAGAGTCAACCTTTGTTTCGTCCGCTGTTCCATGTTATCTGCATGGTGTGGAGAGATTCGAAATATTACTGCAGCTCCTCGAAACTCATGGTTTTATTGAAGCAGATATGCAATCTACTGATTTACCAGGCTAAGAAATGTCTAGACCCGACAACCCTATTTCATAGCGATATAGATGAAGCCACGCAGCGCATCCAATTAACAATAAACATCTTAAAGAAATTCAAAGGGACTTTTGAATATTTTAAAGACAATATCCAAAAGTATTTCGTAGAGCGTCGGGTGATCCCTTGGACCTTCCACCCTAATTTTGTGTTCGAGAGATTGAACAAGTTTCTCGAGAGACTCAACACCATACAATGGTTTTTCAAAACGGTATTAGAGTTTCAAAAGTTAGAGAAAATTGAAATCGGCGGTATGAAAGGCCGAGTATTGGGTGGACAGATCAGGGAAATTTCAGCGGAATTCGAAGCTTATTTCCATGGTTTTGCGTCTAAATCGTATGACGTACTCGACCCAGACGATGAGACGTTTAATGAAGATTTTAAAGAGTTTCAAGAAAATATTATCGATTTAGATCTGAAACTATCAACTGTTTTGGTGGAATCGTTTGATAATTGCTCTACGCTTGAGGCTATTTTCAAGTTAATTGACATAGTTGGGTCTGTATTAGAACGTCCACTCATAAGGAGTGAGTTTACGGCCAAATACGTTGAAATAATTGTTATGTTGGAGAAAGAAATATTGACATGTGAAGATCTATTTGACGAGCAAACACATCGATTCGAGAAATATGGTGTGATGGAAATAGATGCGTTCTTCCCGCCCATAGCAGGAGGACTTCTCTTTATGAATACGCTAGCTACAAGGATAACGAAGCCTATAGCTAGCTTTCGCAATTTGCCGCACCCGATCAAGGGTGCGGACGAAGCGAAGAAAATTTTCATAAGACACGAAGAACTTATCCACAGGATAAATGAATTCAAAAAGAAATATTTTAACGATTGGGCGAAGAAAATACCGAAAGTGATCGAAGAGAAGACCAACAAAATGATTTTGGCGCGACAAGGATCGGACCTGATATTAAACTTTAATCCAACGCTCTTAGACATATTAAAAGAAGTCGATCATCTCCGAAGCAACCCGGACTTCTCTGACATGCTACCAAAAGAAAGCTTAGAGTTATTTGACAAAAGGGAAACGTACCGAAAATATCGCATTAACCTCGGCATAACAATAGACTGGTATAATCAGATACGAAAGAATAGTCAGAAAGTTGAATTTGATTTGGTCGAAGATGAAATTAAGGCGATTGATCAAAGGATCGAAATGGCTCAAAACGAGCTCAATTGGAACTCAAAAGTGTTTTCTGGTGGATTTGCGGCTTATTGA
Protein
MDQAGPSSSNQDPRYDFIGSYVVKSLKLKPEKWMRVLTIEEHRSTLRDFVDKPFPLLLVVVLTHAAQLVPVISFPCYLKNKAVYFVKKKADAIPKENCAEMVVFGDLAPRLIDELAALVDEVFVPLLSNPLNHEGWPLVVSQDILKQIHNLKSTVYEVKGKVNGQTVLPMPVGVELVHEAEKEILKGKEVDLYLKSAIEGVVIKWAQQINDVMMEDSGSAFENGQNPLPSVALAEAREIDLYLRTLEKHFQALEDTDFMESQPLFRPLFHVICMVWRDSKYYCSSSKLMVLLKQICNLLIYQAKKCLDPTTLFHSDIDEATQRIQLTINILKKFKGTFEYFKDNIQKYFVERRVIPWTFHPNFVFERLNKFLERLNTIQWFFKTVLEFQKLEKIEIGGMKGRVLGGQIREISAEFEAYFHGFASKSYDVLDPDDETFNEDFKEFQENIIDLDLKLSTVLVESFDNCSTLEAIFKLIDIVGSVLERPLIRSEFTAKYVEIIVMLEKEILTCEDLFDEQTHRFEKYGVMEIDAFFPPIAGGLLFMNTLATRITKPIASFRNLPHPIKGADEAKKIFIRHEELIHRINEFKKKYFNDWAKKIPKVIEEKTNKMILARQGSDLILNFNPTLLDILKEVDHLRSNPDFSDMLPKESLELFDKRETYRKYRINLGITIDWYNQIRKNSQKVEFDLVEDEIKAIDQRIEMAQNELNWNSKVFSGGFAAY

Summary

Subunit
Consists of at least two heavy chains (alpha and beta), three intermediate chains and several light chains.
Similarity
Belongs to the dynein heavy chain family.
Keywords
3D-structure   ATP-binding   Cell projection   Cilium   Coiled coil   Cytoplasm   Cytoskeleton   Direct protein sequencing   Dynein   Flagellum   Microtubule   Motor protein   Nucleotide-binding   Repeat  
Feature
chain  Dynein beta chain, ciliary
EMBL
BABH01007454    BABH01007455    BABH01007456    BABH01007457    NWSH01001294    PCG71814.1    + More
ODYU01012953    SOQ59508.1    AGBW02007827    OWR54498.1    JTDY01000081    KOB78984.1    KQ461187    KPJ07330.1    CH477538    EAT39332.1    JXUM01075435    KQ562886    KXJ74924.1    DS232111    EDS35091.1    GGFK01000870    MBW34191.1    ATLV01018849    KE525251    KFB43381.1    AAAB01008849    EAL41019.3    UFQS01000646    UFQT01000646    SSX05712.1    SSX26071.1    AJWK01022982    CVRI01000047    CRK98041.1    KQ971307    EFA11309.2    KYB29781.1    APCN01005160    CH940652    EDW59661.2    CH964232    KRF99495.1    EDW81616.1    CH916373    EDV94871.1    CH933806    EDW16045.2    AF494076    AAQ06635.1    CP012526    ALC46327.1    OUUW01000007    SPP83382.1    CM000070    EAL29221.2    KRT01415.1    CM000160    KRK03002.1    KRK03003.1    CH954181    EDV48312.1    CM000364    EDX12148.1    CH479185    EDW38589.1    CH480853    EDW51630.1    AE014297    AGB96173.1    AAF55834.3    JRES01001575    KNC21879.1    CH902617    KPU80296.1    EDV43507.1    AAZO01003313    DS235271    EEB14162.1    CCAG010011423    JXJN01012383    ACPB03010549    NNAY01000654    OXU27164.1    GL447755    EFN86050.1    GL444028    EFN61360.1    KQ981572    KYN39778.1    QOIP01000009    RLU18201.1    KQ978644    KYN29472.1    KQ434980    KZC13060.1    ADTU01005848    ADTU01005849    ABLF02030722    ABLF02030734    ABLF02030735    ABLF02030737    ABLF02030738    KQ982691    KYQ52109.1    KQ977141    KYN05431.1    KZ288199    PBC33642.1    KK107235    EZA54880.1    KQ976738    KYM75717.1    GL888084    EGI67861.1    KQ414688    KOC63714.1    KQ767877    OAD53287.1    LBMM01000571    KMQ98045.1    GECZ01009628    GECZ01003735    JAS60141.1    JAS66034.1    KK853064    KDR11876.1    AMQN01015792    KB312221    ELT87666.1    X59603    AAGJ04129462    D01021    AAGJ04129463    AAGJ04129464    AAGJ04129465    RCHS01001219    RMX54661.1    MRZV01001382    PIK38257.1    DS469516    EDO47920.1    JH816371    EKC20777.1    GEDC01031315    JAS05983.1    LSMT01000358    PFX19499.1    DS985242    EDV28243.1    NOWV01000062    RDD42081.1    KB199905    ESP04008.1   
Pfam
PF03028   Dynein_heavy        + More
PF18198   AAA_lid_11
PF12780   AAA_8
PF18199   Dynein_C
PF17852   Dynein_AAA_lid
PF08385   DHC_N1
PF17857   AAA_lid_1
PF12777   MT
PF12774   AAA_6
PF08393   DHC_N2
PF12781   AAA_9
Interpro
IPR042228   Dynein_2_C        + More
IPR041228   Dynein_C       
IPR041658   AAA_lid_11       
IPR035699   AAA_6       
IPR013594   Dynein_heavy_dom-1       
IPR026983   DHC_fam       
IPR042219   AAA_lid_11_sf       
IPR013602   Dynein_heavy_dom-2       
IPR004273   Dynein_heavy_D6_P-loop       
IPR003593   AAA+_ATPase       
IPR041466   Dynein_AAA5_ext       
IPR027417   P-loop_NTPase       
IPR024743   Dynein_HC_stalk       
IPR024317   Dynein_heavy_chain_D4_dom       
IPR041589   DNAH3_AAA_lid_1       
IPR035706   AAA_9       
IPR042222   Dynein_2_N       
IPR036084   Ser_inhib-like_sf       
SUPFAM
SSF52540   SSF52540        + More
SSF57567   SSF57567       
Gene 3D

Ontologies

Topology

Subcellular location
Cell projection  
Cilium  
Flagellum  
Cytoplasm  
Cytoskeleton  
Flagellum axoneme  
Length:
722
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
7.11982999999998
Exp number, first 60 AAs:
1.6971
Total prob of N-in:
0.23008
outside
1  -  722
 
 

Population Genetic Test Statistics

Pi
217.581442
Theta
200.859166
Tajima's D
0.452425
CLR
1.24535
CSRT
0.497575121243938
Interpretation
Uncertain
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