Gene

KWMTBOMO02989

Pre Gene Modal

BGIBMGA003622

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_dynein_beta_chain?_ciliary-like_[Bombyx_mori]

Location

Bomo_Chr5(-):15116601-15120045      View in EpiBrowser

Full name

Dynein beta chain, ciliary      

Location in the cell

Cytoplasmic   Reliability : 2.579

CDS

ATGCGAAGTTGTCAGGAAAGCGAAATGTGGTTGAACTACGTCGCCTTTGTCGACGCTCTCATGGAAGAAGCATTGTTTAAATGTGTCGCTTGCAGTTTGGGATATATCACAGAGCATATGAATCCTAATAATAAATTAGCTCCACTGTTCGAAGCACAACTTGAACTATTAGATCCAGATATGGTTTTCGCGCCCAGCTTAGATCCAAATGATGAGAAAGGATTCATGGCCTTAATTAAAAGCATAATCGACGATATCATAAATATGTCAGCGTTGATTGAAAGAATAGATCCCAAGCGAAAGGAATCGTACGAACAGCAAATTCTGAACAATGACGATATTAATGATATGAAAGAGGAGATTTTGAATGGGATAGAAAAGGTAATTGAAGACGCAAACGACTTTTGCAAAACCTTCGAGAATTATTCGTATCTTTGGTTAGAAGAACGAGATGCGATCATGGAAATATTTCTAACGTACGGTAGAATACTCTCTGTTGATGAAGTTGATAAGATTGGATCTGAAGATAAAGACGTAGTTGGACCTATTCCGTGTGTGCCCAAAATGGAAGCGTTCAGAGAACAAATTGATCATTACGAGAATTTGTTTATGGACATTGAAGAAATGGAGTCTTACAAAGTGTTTAATAGTTGGTTTCAGGTGGACATTAGACCTTTTCGTCAAGCTCTACTGAATACGGTTAGAAAATGGGGTAACATGTATAAGGAGCATCTTGTTAATAATGTGATTTCCAGTCTAAGTGATCTCGGGAATTTCATCCGACAGGCTGATGAAGGATTGCTGCAACCGGTGTCCGAAGGTGATTACGAAGCTCTTGTAAACGTGATGGGATATCTAATGAATGTCAAAGACCGTGCCGTTACAACTGATGATATGTTTCAACCGCTAACGGAAACTATCGAACTCCTCAAGTTCTATGACATGGACATACCTGAGGAAGTCAATGTACTATTACAGGAATTACCAGAGCAATGGCAGGCAACGAAGAAGTTGGCTTTAACAGTGAAGCAACAAGTTGCTCCTCTACAAGCCGCTGAAGTATCTGGTATAAGAAAGAAGATAGCTACATTCGACTCGCACATCACTTACTATCGTGAAGTATTTAAACGATATGAGTTTTTCAAATATGAATGCGAAAATCCTTACGAAGTAATGGCGAGAGTGGATTACGAGATTTTGAATTTGGAAGAAGAAATGAGAAGCATCCAGGAATCTGGGTCTCTGTTCGAAGTGAACGTTCCCGAATTTAAGTTGTTGAAGCAATGCAGAAAGGAATTGAGGATGCTTAAGCAACTCTGGGATTATGTGTACATTGTGAGAACGAGTATCGAAGATTGGAAAACAACGCCCTGGAGGAAGATAGACGTTGAGAATATGGATATTGAATGCAAGAAATTTGCAAAGGAAATACGTTTGCTTGACAAAGAAATGAGAAGGTAA

Protein

MRSCQESEMWLNYVAFVDALMEEALFKCVACSLGYITEHMNPNNKLAPLFEAQLELLDPDMVFAPSLDPNDEKGFMALIKSIIDDIINMSALIERIDPKRKESYEQQILNNDDINDMKEEILNGIEKVIEDANDFCKTFENYSYLWLEERDAIMEIFLTYGRILSVDEVDKIGSEDKDVVGPIPCVPKMEAFREQIDHYENLFMDIEEMESYKVFNSWFQVDIRPFRQALLNTVRKWGNMYKEHLVNNVISSLSDLGNFIRQADEGLLQPVSEGDYEALVNVMGYLMNVKDRAVTTDDMFQPLTETIELLKFYDMDIPEEVNVLLQELPEQWQATKKLALTVKQQVAPLQAAEVSGIRKKIATFDSHITYYREVFKRYEFFKYECENPYEVMARVDYEILNLEEEMRSIQESGSLFEVNVPEFKLLKQCRKELRMLKQLWDYVYIVRTSIEDWKTTPWRKIDVENMDIECKKFAKEIRLLDKEMRR

Subunit

Consists of at least two heavy chains (alpha and beta), three intermediate chains and several light chains.

Similarity

Belongs to the dynein heavy chain family.

Keywords

3D-structure   ATP-binding   Cell projection   Cilium   Coiled coil   Cytoplasm   Cytoskeleton   Direct protein sequencing   Dynein   Flagellum   Microtubule   Motor protein   Nucleotide-binding   Repeat  

Feature

chain  Dynein beta chain, ciliary

Uniprot

H9J285   A0A2H1X2P9   A0A0N0PAL7   A0A2A4JJP5   A0A212FLC9   A0A182WR89   + More
A0A182HX97   Q5TUD8   A0A182S8T8   A0A1S4H4T4   A0A182PVS5   A0A182JRE6   Q16XH8   A0A1S4FKM6   A0A182YIP1   A0A182GMZ9   A0A182MNY4   A0A182QB97   A0A182IVR3   A0A182RBC6   A0A182NDL4   W5J456   A0A2M4A0B6   A0A084VZI7   B0WUU8   A0A182LNA0   A0A182TS04   A0A182W3T1   A0A182VFZ9   A0A182FM39   D6W7L1   A0A139WPL9   A0A0L0BRR1   A0A1I8PWQ2   A0A3B0JSI1   A0A0R3NKH1   Q293J4   A0A1W4VZS9   A0A1W4VLP2   A0A0Q9X5F3   B4N969   A0A1I8M6W0   A0A1I8M6W5   A0A1B0BD95   B3P2Z8   A0A0B4KHJ4   Q9VDG0   A0A0R1E5P0   B4R1N9   A0A0R1E127   B4PQ99   A0A0R1E125   A0A0R1E1G1   B4IKM6   A0A1A9UNI3   A0A1A9ZDG9   B4M4V0   B3M2X7   A0A0P8Y0J0   B4KE24   N6U0M0   U4UP43   B4JSY1   A0A0M4ELU1   A0A1B0G9S0   A0A0L7QYM1   A0A154PPG4   A0A195CXR3   A0A1J1IHV8   A0A151JQJ9   E2BE63   A0A0M9AA00   A0A232F8J8   F4WD53   A0A310S6L6   A0A151JXC9   A0A158P169   A0A195AUI3   A0A026WFI7   A0A3L8DCZ9   E2AYZ0   A0A151WVZ6   A0A088AF70   E0VLA6   Q71JD2   E9IZE9   A0A1W4X3T6   A0A1B0CQ39   A0A0J7P079   A0A1A9WGW3   J9K4Q1   A0A2A3EQV0   T1HP15   A0A067QR23   A0A1S3IDL2   A0A1S3IEP3   A0A2T7Q0D5   A7RKK0   K1PAG1   P23098  

Pubmed

19121390    26354079    22118469    12364791    17510324    25244985    + More
26483478    20920257    23761445    24438588    20966253    18362917    19820115    26108605    15632085    17994087    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    23537049    20798317    28648823    21719571    21347285    24508170    30249741    20566863    21282665    24845553    17615350    22992520    1830927    1833761    11250194   

EMBL

BABH01007454    BABH01007455    BABH01007456    BABH01007457    ODYU01012953    SOQ59508.1    + More
KQ461187    KPJ07330.1    NWSH01001294    PCG71814.1    AGBW02007827    OWR54499.1    APCN01005160    AAAB01008849    EAL41019.3    CH477538    EAT39332.1    JXUM01075435    KQ562886    KXJ74924.1    AXCM01000636    AXCN02001753    ADMH02002126    ETN58641.1    GGFK01000870    MBW34191.1    ATLV01018849    KE525251    KFB43381.1    DS232111    EDS35091.1    KQ971307    EFA11309.2    KYB29781.1    JRES01001575    KNC21879.1    OUUW01000007    SPP83382.1    CM000070    KRT01415.1    EAL29221.2    CH964232    KRF99495.1    EDW81616.1    JXJN01012383    CH954181    EDV48312.1    AE014297    AGB96173.1    AAF55834.3    CM000160    KRK03002.1    CM000364    EDX12148.1    KRK03003.1    EDW96208.2    KRK03004.1    KRK03001.1    CH480853    EDW51630.1    CH940652    EDW59661.2    CH902617    EDV43507.1    KPU80296.1    CH933806    EDW16045.2    APGK01047112    APGK01047113    APGK01047114    APGK01047115    APGK01047116    APGK01047117    APGK01047118    KB741077    ENN74141.1    KB632384    ERL94273.1    CH916373    EDV94871.1    CP012526    ALC46327.1    CCAG010011423    KQ414688    KOC63714.1    KQ434980    KZC13060.1    KQ977141    KYN05431.1    CVRI01000047    CRK98041.1    KQ978644    KYN29472.1    GL447755    EFN86050.1    KQ435706    KOX80265.1    NNAY01000654    OXU27164.1    GL888084    EGI67861.1    KQ767877    OAD53287.1    KQ981572    KYN39778.1    ADTU01005848    ADTU01005849    KQ976738    KYM75717.1    KK107235    EZA54880.1    QOIP01000009    RLU18201.1    GL444028    EFN61360.1    KQ982691    KYQ52109.1    AAZO01003313    DS235271    EEB14162.1    AF494076    AAQ06635.1    GL767121    EFZ14060.1    AJWK01022982    LBMM01000571    KMQ98045.1    ABLF02030722    ABLF02030734    ABLF02030735    ABLF02030737    ABLF02030738    KZ288199    PBC33642.1    ACPB03010549    KK853064    KDR11876.1    PZQS01000001    PVD39135.1    DS469516    EDO47920.1    JH816371    EKC20777.1    X59603   

Proteomes

UP000005204    UP000053240    UP000218220    UP000007151    UP000076407    UP000075840    + More
UP000007062    UP000075901    UP000075885    UP000075881    UP000008820    UP000076408    UP000069940    UP000249989    UP000075883    UP000075886    UP000075880    UP000075900    UP000075884    UP000000673    UP000030765    UP000002320    UP000075882    UP000075902    UP000075920    UP000075903    UP000069272    UP000007266    UP000037069    UP000095300    UP000268350    UP000001819    UP000192221    UP000007798    UP000095301    UP000092460    UP000008711    UP000000803    UP000002282    UP000000304    UP000001292    UP000078200    UP000092445    UP000008792    UP000007801    UP000009192    UP000019118    UP000030742    UP000001070    UP000092553    UP000092444    UP000053825    UP000076502    UP000078542    UP000183832    UP000078492    UP000008237    UP000053105    UP000215335    UP000007755    UP000078541    UP000005205    UP000078540    UP000053097    UP000279307    UP000000311    UP000075809    UP000005203    UP000009046    UP000192223    UP000092461    UP000036403    UP000091820    UP000007819    UP000242457    UP000015103    UP000027135    UP000085678    UP000245119    UP000001593    UP000005408   

PRIDE

H9J285    Q9VDG0    P23098   

Pfam

PF03028   Dynein_heavy        + More
PF18198   AAA_lid_11
PF12780   AAA_8
PF18199   Dynein_C
PF17852   Dynein_AAA_lid
PF08385   DHC_N1
PF17857   AAA_lid_1
PF12777   MT
PF12774   AAA_6
PF08393   DHC_N2
PF12781   AAA_9
PF07728   AAA_5

Interpro

IPR042228   Dynein_2_C        + More
IPR041228   Dynein_C       
IPR041658   AAA_lid_11       
IPR035699   AAA_6       
IPR013594   Dynein_heavy_dom-1       
IPR026983   DHC_fam       
IPR042219   AAA_lid_11_sf       
IPR013602   Dynein_heavy_dom-2       
IPR004273   Dynein_heavy_D6_P-loop       
IPR003593   AAA+_ATPase       
IPR041466   Dynein_AAA5_ext       
IPR027417   P-loop_NTPase       
IPR024743   Dynein_HC_stalk       
IPR024317   Dynein_heavy_chain_D4_dom       
IPR041589   DNAH3_AAA_lid_1       
IPR035706   AAA_9       
IPR042222   Dynein_2_N       
IPR009069   Cys_alpha_HP_mot_SF       
IPR011704   ATPase_dyneun-rel_AAA       
IPR036084   Ser_inhib-like_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF47072   SSF47072       
SSF57567   SSF57567       

Gene 3D

1.10.8.720     1.20.140.100     3.20.180.20    

ProteinModelPortal

H9J285   A0A2H1X2P9   A0A0N0PAL7   A0A2A4JJP5   A0A212FLC9   A0A182WR89   + More
A0A182HX97   Q5TUD8   A0A182S8T8   A0A1S4H4T4   A0A182PVS5   A0A182JRE6   Q16XH8   A0A1S4FKM6   A0A182YIP1   A0A182GMZ9   A0A182MNY4   A0A182QB97   A0A182IVR3   A0A182RBC6   A0A182NDL4   W5J456   A0A2M4A0B6   A0A084VZI7   B0WUU8   A0A182LNA0   A0A182TS04   A0A182W3T1   A0A182VFZ9   A0A182FM39   D6W7L1   A0A139WPL9   A0A0L0BRR1   A0A1I8PWQ2   A0A3B0JSI1   A0A0R3NKH1   Q293J4   A0A1W4VZS9   A0A1W4VLP2   A0A0Q9X5F3   B4N969   A0A1I8M6W0   A0A1I8M6W5   A0A1B0BD95   B3P2Z8   A0A0B4KHJ4   Q9VDG0   A0A0R1E5P0   B4R1N9   A0A0R1E127   B4PQ99   A0A0R1E125   A0A0R1E1G1   B4IKM6   A0A1A9UNI3   A0A1A9ZDG9   B4M4V0   B3M2X7   A0A0P8Y0J0   B4KE24   N6U0M0   U4UP43   B4JSY1   A0A0M4ELU1   A0A1B0G9S0   A0A0L7QYM1   A0A154PPG4   A0A195CXR3   A0A1J1IHV8   A0A151JQJ9   E2BE63   A0A0M9AA00   A0A232F8J8   F4WD53   A0A310S6L6   A0A151JXC9   A0A158P169   A0A195AUI3   A0A026WFI7   A0A3L8DCZ9   E2AYZ0   A0A151WVZ6   A0A088AF70   E0VLA6   Q71JD2   E9IZE9   A0A1W4X3T6   A0A1B0CQ39   A0A0J7P079   A0A1A9WGW3   J9K4Q1   A0A2A3EQV0   T1HP15   A0A067QR23   A0A1S3IDL2   A0A1S3IEP3   A0A2T7Q0D5   A7RKK0   K1PAG1   P23098  

KEGG

101743793    K10408 dynein heavy chain, axonemal | (RefSeq) dynein beta chain, ciliary-like

GO

GO:0003777   GO:0005524   GO:0007018   GO:0030286   GO:0045505   GO:0008569   GO:0005930   GO:0045503   GO:0051959   GO:0016021   GO:0016887   GO:0007605   GO:0003341   GO:0036157   GO:0005875   GO:0042623   GO:0005874   GO:0031514   GO:0030030   GO:0005737  

PANTHER

PTHR10676  

Subcellular location

Cell projection  
Cilium  
Flagellum  
Cytoplasm  
Cytoskeleton  
Flagellum axoneme  

Length:

486

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0983899999999999

Exp number, first 60 AAs:

0.09739

Total prob of N-in:

0.01621

outside

1  -  486

 

 

Pi

37.810146

Theta

27.30801

Tajima's D

1.257915

CLR

0.709616

CSRT

0.730113494325284

Interpretation

Uncertain