Gene

KWMTBOMO02988

Pre Gene Modal

BGIBMGA003622

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_dynein_beta_chain?_ciliary-like_[Bombyx_mori]

Location

Bomo_Chr5(-):15113567-15115395      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.335 Nuclear   Reliability : 1.889

CDS

ATGGATATGAACACAACGTTAGCTGATCTGTTAGCTTTGAATCTACATGAGTGCGAGGAGGAAGTAAAAAATATAGTAGATAAAGCAGTCAAAGAAATGTCTATGGAGAAAACACTGAAAGATCTAAATAGTACTTGGAAAGCGATGGAGTTTGAACAAGAAGTTCATACCAGAACAGGGTGTGTACTGTTAAGGGCAAGCGAAGAATTGATTGAGACTTTAGAGGAGAATCAGGTTCAACTACAAAATCTGATAACATCAAAATTTATCGCGCATTTTTTGGAAGAAGTATCGAGCTGGCAACAAAAGTTGTCCATAGCTGACCAAGTGATCTCGGTGTGGTTCGAAGTTCAAAGAACATGGACTCATTTGGAGAGTATTTTTATGAGTTCTGAGGACATAAGAAAACAGCTGCCTGATGATTCTGCGAGATTTGATAGAATTGATGCCGAGTTTAAAATTTTATCGCAAGAAATGTCAAAGACACCGAACGTGGTAAAAGGAACGAACAAAGAAGGACTTGTGGAAATTTTGGATTTGTTACAAAAGGATCTGGTAATTTGCGAAAAGGCTTTGGCCGAATATTTGGAGACTAAACGACTCGCGTTTCCAAGATTTTATTTCGTATCATCTGCGGATCTATTAGATATTCTGTCTAATGGTAACCAGGCAGATCTTGTTATAAGGCACTTAACTAAATTGTTCGATTCGATTGCTAAATTGAAGTTTAACGAAACTGATCAGCCCAATGAGAAAGTAGCCTTAGGCATGATAGCTAAAGATGGTGAATATGTACCGTTTCATGGTACGTGCGATTGTACCGGACCCGTTGAAATATGGCTTAACAGATTACAAGACATAATGAGATCGACAATCCGCCATTACTTCGGTGAAGCGATCGTGACCTACGAAGAGAAACCTCGCGAGCAGTGGCTGTTTGATTTCATGGCTCAGGTGTCTTTGTGCGGTTCACAAATCTGGTGGACCACAGAAGTTAACATGGCTTTCGCTAGATTAGAGGAAGGATATGATAATGCACTGAAAGATTACTACAAGAAACAGTTGTACCAATTAAGTACATTGATTTCGCTCCTGATCGGAGAGCTGAGCAAGCAGGACCGACAGAAAATTATGACTATATGCACAATAGACGTGCATTCAAGAGACGTTGTAAGCAAGTTGATACAAGGGAAAGTCGAAGCCGGATCAGCGTTTCAATGGCAATCCCAACTGAGACACAGGTTTCACGAAACACAACTAAATCGTCATCTGCACTTAATCATCCAAGGTTATCATAAGCACTTACATTTAGTTTGA

Protein

MDMNTTLADLLALNLHECEEEVKNIVDKAVKEMSMEKTLKDLNSTWKAMEFEQEVHTRTGCVLLRASEELIETLEENQVQLQNLITSKFIAHFLEEVSSWQQKLSIADQVISVWFEVQRTWTHLESIFMSSEDIRKQLPDDSARFDRIDAEFKILSQEMSKTPNVVKGTNKEGLVEILDLLQKDLVICEKALAEYLETKRLAFPRFYFVSSADLLDILSNGNQADLVIRHLTKLFDSIAKLKFNETDQPNEKVALGMIAKDGEYVPFHGTCDCTGPVEIWLNRLQDIMRSTIRHYFGEAIVTYEEKPREQWLFDFMAQVSLCGSQIWWTTEVNMAFARLEEGYDNALKDYYKKQLYQLSTLISLLIGELSKQDRQKIMTICTIDVHSRDVVSKLIQGKVEAGSAFQWQSQLRHRFHETQLNRHLHLIIQGYHKHLHLV

Uniprot

H9J285   A0A0L7LUC4   A0A0N0PAL7   A0A2H1X2P9   A0A2A4JJP5   A0A212FLC8   + More
E2AYZ0   A0A0M9AA00   A0A0J7P079   A0A182GMZ9   A0A1S4FKM6   Q16XH8   A0A0L7QYM1   A0A232F8J8   A0A154PPG4   F4WD53   A0A151JXC9   A0A151WVZ6   E9IZF0   A0A2M4A0B6   A0A195CXR3   A0A182IVR3   W5J456   E2BE63   A0A182FM39   A0A026WFI7   A0A3L8DCZ9   E0VLA6   A0A139WPL9   A0A310S6L6   D6W7L1   A0A084VZI7   A0A151JQJ9   B0WUU8   A0A088AF70   A0A195AUI3   A0A158P169   N6U0M0   U4UP43   A0A2A3EQV0   T1HP15   A0A182QB97   J9K4Q1   A0A182W3T1   A0A182MNY4   A0A182JRE6   A0A182NDL4   Q5TUD8   A0A1S4H4T4   A0A1A9WGW2   A0A182WR89   A0A182PVS5   A0A182HX97   A0A2R7WSY4   A0A1I8M6W5   A0A1I8M6W0   A0A1B0G9S0   A0A182RBC6   A0A182VFZ9   A0A1I8PWQ2   A0A1A9XQ49   A0A1A9UNH8   A0A1B0BD95   A0A1J1IHV8   A0A067QR23   A0A1A9ZDG9   A0A0L0BTW6   B4M4V0   B4KE24   A0A0Q9X5F3   B4N969   Q293J4   A0A0R3NKH1   B4GM15   A0A0P8Y0J0   B3M2X7   A0A0M4ELU1   A0A182YIP1   B4JSY1   A0A3B0JSI1   B4IKM6   A0A0R1E5P0   A0A0R1E127   B4PQ99   A0A0R1E1G1   B3P2Z8   A0A0B4KHJ4   Q9VDG0   A0A0R1E125   A0A1W4VZS9   A0A1W4VLP2   B4R1N9   Q71JD2   A0A182TS04   A0A1S3IDL2   A0A1S3IEP3   A0A1W4X3T6   B3RPT9   A0A369S6B3   A0A2P8YQY7  

Pubmed

19121390    26227816    26354079    22118469    20798317    26483478    + More
17510324    28648823    21719571    21282665    20920257    23761445    24508170    30249741    20566863    18362917    19820115    24438588    21347285    23537049    12364791    25315136    24845553    26108605    17994087    15632085    25244985    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    18719581    30042472    29403074   

EMBL

BABH01007454    BABH01007455    BABH01007456    BABH01007457    JTDY01000081    KOB78984.1    + More
KQ461187    KPJ07330.1    ODYU01012953    SOQ59508.1    NWSH01001294    PCG71814.1    AGBW02007827    OWR54500.1    GL444028    EFN61360.1    KQ435706    KOX80265.1    LBMM01000571    KMQ98045.1    JXUM01075435    KQ562886    KXJ74924.1    CH477538    EAT39332.1    KQ414688    KOC63714.1    NNAY01000654    OXU27164.1    KQ434980    KZC13060.1    GL888084    EGI67861.1    KQ981572    KYN39778.1    KQ982691    KYQ52109.1    GL767121    EFZ14108.1    GGFK01000870    MBW34191.1    KQ977141    KYN05431.1    ADMH02002126    ETN58641.1    GL447755    EFN86050.1    KK107235    EZA54880.1    QOIP01000009    RLU18201.1    AAZO01003313    DS235271    EEB14162.1    KQ971307    KYB29781.1    KQ767877    OAD53287.1    EFA11309.2    ATLV01018849    KE525251    KFB43381.1    KQ978644    KYN29472.1    DS232111    EDS35091.1    KQ976738    KYM75717.1    ADTU01005848    ADTU01005849    APGK01047112    APGK01047113    APGK01047114    APGK01047115    APGK01047116    APGK01047117    APGK01047118    KB741077    ENN74141.1    KB632384    ERL94273.1    KZ288199    PBC33642.1    ACPB03010549    AXCN02001753    ABLF02030722    ABLF02030734    ABLF02030735    ABLF02030737    ABLF02030738    AXCM01000636    AAAB01008849    EAL41019.3    APCN01005160    KK855459    PTY22669.1    CCAG010011423    JXJN01012383    CVRI01000047    CRK98041.1    KK853064    KDR11876.1    JRES01001345    KNC23525.1    CH940652    EDW59661.2    CH933806    EDW16045.2    CH964232    KRF99495.1    EDW81616.1    CM000070    EAL29221.2    KRT01415.1    CH479185    EDW38589.1    CH902617    KPU80296.1    EDV43507.1    CP012526    ALC46327.1    CH916373    EDV94871.1    OUUW01000007    SPP83382.1    CH480853    EDW51630.1    CM000160    KRK03002.1    KRK03003.1    EDW96208.2    KRK03001.1    CH954181    EDV48312.1    AE014297    AGB96173.1    AAF55834.3    KRK03004.1    CM000364    EDX12148.1    AF494076    AAQ06635.1    DS985242    EDV28243.1    NOWV01000062    RDD42081.1    PYGN01000422    PSN46658.1   

Proteomes

UP000005204    UP000037510    UP000053240    UP000218220    UP000007151    UP000000311    + More
UP000053105    UP000036403    UP000069940    UP000249989    UP000008820    UP000053825    UP000215335    UP000076502    UP000007755    UP000078541    UP000075809    UP000078542    UP000075880    UP000000673    UP000008237    UP000069272    UP000053097    UP000279307    UP000009046    UP000007266    UP000030765    UP000078492    UP000002320    UP000005203    UP000078540    UP000005205    UP000019118    UP000030742    UP000242457    UP000015103    UP000075886    UP000007819    UP000075920    UP000075883    UP000075881    UP000075884    UP000007062    UP000091820    UP000076407    UP000075885    UP000075840    UP000095301    UP000092444    UP000075900    UP000075903    UP000095300    UP000092443    UP000078200    UP000092460    UP000183832    UP000027135    UP000092445    UP000037069    UP000008792    UP000009192    UP000007798    UP000001819    UP000008744    UP000007801    UP000092553    UP000076408    UP000001070    UP000268350    UP000001292    UP000002282    UP000008711    UP000000803    UP000192221    UP000000304    UP000075902    UP000085678    UP000192223    UP000009022    UP000253843    UP000245037   

PRIDE

H9J285    Q9VDG0   

Pfam

PF03028   Dynein_heavy        + More
PF18198   AAA_lid_11
PF12780   AAA_8
PF18199   Dynein_C
PF17852   Dynein_AAA_lid
PF08385   DHC_N1
PF17857   AAA_lid_1
PF12777   MT
PF12774   AAA_6
PF08393   DHC_N2
PF12781   AAA_9
PF07728   AAA_5

Interpro

IPR042228   Dynein_2_C        + More
IPR041228   Dynein_C       
IPR041658   AAA_lid_11       
IPR035699   AAA_6       
IPR013594   Dynein_heavy_dom-1       
IPR026983   DHC_fam       
IPR042219   AAA_lid_11_sf       
IPR013602   Dynein_heavy_dom-2       
IPR004273   Dynein_heavy_D6_P-loop       
IPR003593   AAA+_ATPase       
IPR041466   Dynein_AAA5_ext       
IPR027417   P-loop_NTPase       
IPR024743   Dynein_HC_stalk       
IPR024317   Dynein_heavy_chain_D4_dom       
IPR041589   DNAH3_AAA_lid_1       
IPR035706   AAA_9       
IPR042222   Dynein_2_N       
IPR036084   Ser_inhib-like_sf       
IPR009069   Cys_alpha_HP_mot_SF       
IPR011704   ATPase_dyneun-rel_AAA       

SUPFAM

SSF52540   SSF52540        + More
SSF57567   SSF57567       
SSF47072   SSF47072       

Gene 3D

1.10.8.720     1.20.140.100     3.20.180.20    

ProteinModelPortal

H9J285   A0A0L7LUC4   A0A0N0PAL7   A0A2H1X2P9   A0A2A4JJP5   A0A212FLC8   + More
E2AYZ0   A0A0M9AA00   A0A0J7P079   A0A182GMZ9   A0A1S4FKM6   Q16XH8   A0A0L7QYM1   A0A232F8J8   A0A154PPG4   F4WD53   A0A151JXC9   A0A151WVZ6   E9IZF0   A0A2M4A0B6   A0A195CXR3   A0A182IVR3   W5J456   E2BE63   A0A182FM39   A0A026WFI7   A0A3L8DCZ9   E0VLA6   A0A139WPL9   A0A310S6L6   D6W7L1   A0A084VZI7   A0A151JQJ9   B0WUU8   A0A088AF70   A0A195AUI3   A0A158P169   N6U0M0   U4UP43   A0A2A3EQV0   T1HP15   A0A182QB97   J9K4Q1   A0A182W3T1   A0A182MNY4   A0A182JRE6   A0A182NDL4   Q5TUD8   A0A1S4H4T4   A0A1A9WGW2   A0A182WR89   A0A182PVS5   A0A182HX97   A0A2R7WSY4   A0A1I8M6W5   A0A1I8M6W0   A0A1B0G9S0   A0A182RBC6   A0A182VFZ9   A0A1I8PWQ2   A0A1A9XQ49   A0A1A9UNH8   A0A1B0BD95   A0A1J1IHV8   A0A067QR23   A0A1A9ZDG9   A0A0L0BTW6   B4M4V0   B4KE24   A0A0Q9X5F3   B4N969   Q293J4   A0A0R3NKH1   B4GM15   A0A0P8Y0J0   B3M2X7   A0A0M4ELU1   A0A182YIP1   B4JSY1   A0A3B0JSI1   B4IKM6   A0A0R1E5P0   A0A0R1E127   B4PQ99   A0A0R1E1G1   B3P2Z8   A0A0B4KHJ4   Q9VDG0   A0A0R1E125   A0A1W4VZS9   A0A1W4VLP2   B4R1N9   Q71JD2   A0A182TS04   A0A1S3IDL2   A0A1S3IEP3   A0A1W4X3T6   B3RPT9   A0A369S6B3   A0A2P8YQY7  

PDB

5NUG     E-value=6.48913e-49,     Score=490

KEGG

101743793    K10408 dynein heavy chain, axonemal | (RefSeq) dynein beta chain, ciliary-like

GO

GO:0003777   GO:0005524   GO:0007018   GO:0030286   GO:0016021   GO:0016887   GO:0045505   GO:0008569   GO:0005930   GO:0045503   GO:0051959   GO:0007605   GO:0003341   GO:0036157   GO:0005875   GO:0042623  

PANTHER

PTHR10676  

Length:

438

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00928

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00490

outside

1  -  438

 

 

Pi

115.717705

Theta

136.573518

Tajima's D

-0.627462

CLR

52.787345

CSRT

0.210489475526224

Interpretation

Uncertain