Gene

KWMTBOMO02981

Pre Gene Modal

BGIBMGA003622

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_dynein_beta_chain?_ciliary-like_[Bombyx_mori]

Location

Bomo_Chr5(-):15080874-15082335      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 1.123

CDS

ATGTGCGGCAAGGAAGCTGAATTCAAAGCAATTTTATTCTCGTTGTGCTACTTCCACGCTGTGGTTGCTGAGAGGCGCAAGTTCGGTCCTCAAGGATGGAATAAAATTTATCCATTTAACGTTGGTGATCTCACCATTAGCGTATTCGTTCTGTACAACTATTTGGAAGCAAATTCAAGGGTGCCCTGGGAAGATTTGAGATATCTCTTCGGAGAGATAATGTACGGAGGTCATATAACTGATGATTGGGACAGAAGGCTCTGTAACGCATACCTGGAAGAATTAATGCAGCCGGATCTGGTTGATGGAGAGCTGCAACTCGCCCCAGGTTTCCCTGCTCCACCAAACACAGATTACAGCGGCTACCATCAATACATAGAAGACGCCATGCCGGCTGAATCTCCGTACCTTTACGGGCTACATCCAAATGCTGAAATAGGTTTTCTGACGACTACCTCAGAAAATTTGTTTAGAACGATATTCGAGATGCAACCAAGAGATGCTCAGGCTTCTGGTGCCACTACTGTGACCAGAGAGGACAAGGTTTGTTTCATGGTTTTTTAG

Protein

MCGKEAEFKAILFSLCYFHAVVAERRKFGPQGWNKIYPFNVGDLTISVFVLYNYLEANSRVPWEDLRYLFGEIMYGGHITDDWDRRLCNAYLEELMQPDLVDGELQLAPGFPAPPNTDYSGYHQYIEDAMPAESPYLYGLHPNAEIGFLTTTSENLFRTIFEMQPRDAQASGATTVTREDKVCFMVF

Uniprot

H9J285   A0A2H1X2P9   A0A2A4JJP5   A0A0N1ID47   A0A212FLC8   A0A1B6DVH7   + More
A0A2J7PBF2   A0A2J7PBE9   A0A2J7RTB7   A0A2J7RTB8   A0A034UZR8   A0A2J7RTA3   A0A2J7RTA2   A0A0A9Y300   A0A2J7RTA7   A0A2J7RT97   A0A139WPL9   D6W7L1   A0A182SWG7   A0A1B0EYP6   E0VLA6   W8CAW5   A0A1J1IHV8   A0A2M4DP19   A0A232F8L3   A0A182V866   B0WUU8   A0A182IVR3   A0A1B6GIG4   A0A182YIP1   W5J456   A0A084VZI7   A0A182MNY4   A0A182LNA0   A0A2M4A0B6   A0A182FM39   A0A182NDL4   A0A1S4H4T4   A0A182W3T1   A0A182WR89   A0A182JRE6   A0A182PVS5   A0A182HX97   A0A182QB97   Q5TUD8   A0A182RBC6   A0A182TS04   A0A0M9AA00   A0A1S4FKM6   Q16XH8   A0A154PPG4   A0A182GMZ9   A0A336KXF6   A0A1W4X3T6   U4UMC9   A0A0R3NKH1   Q293J4   A0A336M9T6   A0A2S2QK24   N6U0M0   A0A0L7QYM1   E9IZF0   A0A1A9WGW2   A0A310S6L6   A0A1I8PWQ2   A0A195CXR3   A0A151JQJ9   A0A151JXC9   A0A1B0G9S0   A0A3B0JSI1   A0A1A9UNH8   A0A1A9XQ49   A0A1A9ZDG9   A0A0R1E127   A0A0B4KHJ4   A0A0R1E5P0   Q9VDG0   A0A1I8M6W5   A0A0R1E1G1   B3P2Z8   A0A0R1E125   B4IKM6   A0A1B0BD95   A0A195AUI3   A0A1I8M6W0   B4PQ99   B4R1N9   A0A0P8Y0J0   A0A1W4VZS9   A0A1W4VLP2   B3M2X7   B4M4V0   A0A158P169   A0A0L0BTW6   A0A0J7P079   B4JSY1   E2BE63   A0A151WVZ6   B4KE24   E2AYZ0  

Pubmed

19121390    26354079    22118469    25348373    25401762    18362917    + More
19820115    20566863    24495485    28648823    25244985    20920257    23761445    24438588    20966253    12364791    17510324    26483478    23537049    15632085    17994087    21282665    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25315136    21347285    26108605    20798317   

EMBL

BABH01007454    BABH01007455    BABH01007456    BABH01007457    ODYU01012953    SOQ59508.1    + More
NWSH01001294    PCG71814.1    KQ461187    KPJ07329.1    AGBW02007827    OWR54500.1    GEDC01007614    JAS29684.1    NEVH01027098    PNF13660.1    PNF13659.1    NEVH01000006    PNF44066.1    PNF44069.1    GAKP01023217    JAC35739.1    PNF44070.1    PNF44065.1    GBHO01018116    JAG25488.1    PNF44067.1    PNF44063.1    KQ971307    KYB29781.1    EFA11309.2    AJVK01064446    AAZO01003313    DS235271    EEB14162.1    GAMC01000989    JAC05567.1    CVRI01000047    CRK98041.1    GGFL01015101    MBW79279.1    NNAY01000755    OXU26657.1    DS232111    EDS35091.1    GECZ01007537    JAS62232.1    ADMH02002126    ETN58641.1    ATLV01018849    KE525251    KFB43381.1    AXCM01000636    GGFK01000870    MBW34191.1    AAAB01008849    APCN01005160    AXCN02001753    EAL41019.3    KQ435706    KOX80265.1    CH477538    EAT39332.1    KQ434980    KZC13060.1    JXUM01075435    KQ562886    KXJ74924.1    UFQS01001276    UFQT01001276    SSX10081.1    SSX29803.1    KB632384    ERL94272.1    CM000070    KRT01415.1    EAL29221.2    UFQS01000646    UFQT01000646    SSX05712.1    SSX26071.1    GGMS01008884    MBY78087.1    APGK01047112    APGK01047113    APGK01047114    APGK01047115    APGK01047116    APGK01047117    APGK01047118    KB741077    ENN74141.1    KQ414688    KOC63714.1    GL767121    EFZ14108.1    KQ767877    OAD53287.1    KQ977141    KYN05431.1    KQ978644    KYN29472.1    KQ981572    KYN39778.1    CCAG010011423    OUUW01000007    SPP83382.1    CM000160    KRK03003.1    AE014297    AGB96173.1    KRK03002.1    AAF55834.3    KRK03001.1    CH954181    EDV48312.1    KRK03004.1    CH480853    EDW51630.1    JXJN01012383    KQ976738    KYM75717.1    EDW96208.2    CM000364    EDX12148.1    CH902617    KPU80296.1    EDV43507.1    CH940652    EDW59661.2    ADTU01005848    ADTU01005849    JRES01001345    KNC23525.1    LBMM01000571    KMQ98045.1    CH916373    EDV94871.1    GL447755    EFN86050.1    KQ982691    KYQ52109.1    CH933806    EDW16045.2    GL444028    EFN61360.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000235965    UP000007266    + More
UP000075901    UP000092462    UP000009046    UP000183832    UP000215335    UP000075903    UP000002320    UP000075880    UP000076408    UP000000673    UP000030765    UP000075883    UP000075882    UP000069272    UP000075884    UP000075920    UP000076407    UP000075881    UP000075885    UP000075840    UP000075886    UP000007062    UP000075900    UP000075902    UP000053105    UP000008820    UP000076502    UP000069940    UP000249989    UP000192223    UP000030742    UP000001819    UP000019118    UP000053825    UP000091820    UP000095300    UP000078542    UP000078492    UP000078541    UP000092444    UP000268350    UP000078200    UP000092443    UP000092445    UP000002282    UP000000803    UP000095301    UP000008711    UP000001292    UP000092460    UP000078540    UP000000304    UP000007801    UP000192221    UP000008792    UP000005205    UP000037069    UP000036403    UP000001070    UP000008237    UP000075809    UP000009192    UP000000311   

PRIDE

H9J285    Q9VDG0   

Pfam

PF03028   Dynein_heavy        + More
PF18198   AAA_lid_11
PF12780   AAA_8
PF18199   Dynein_C
PF17852   Dynein_AAA_lid
PF08385   DHC_N1
PF17857   AAA_lid_1
PF12777   MT
PF12774   AAA_6
PF08393   DHC_N2
PF12781   AAA_9
PF07728   AAA_5

Interpro

IPR042228   Dynein_2_C        + More
IPR041228   Dynein_C       
IPR041658   AAA_lid_11       
IPR035699   AAA_6       
IPR013594   Dynein_heavy_dom-1       
IPR026983   DHC_fam       
IPR042219   AAA_lid_11_sf       
IPR013602   Dynein_heavy_dom-2       
IPR004273   Dynein_heavy_D6_P-loop       
IPR003593   AAA+_ATPase       
IPR041466   Dynein_AAA5_ext       
IPR027417   P-loop_NTPase       
IPR024743   Dynein_HC_stalk       
IPR024317   Dynein_heavy_chain_D4_dom       
IPR041589   DNAH3_AAA_lid_1       
IPR035706   AAA_9       
IPR042222   Dynein_2_N       
IPR009069   Cys_alpha_HP_mot_SF       
IPR011704   ATPase_dyneun-rel_AAA       
IPR036084   Ser_inhib-like_sf       

SUPFAM

SSF52540   SSF52540        + More
SSF47072   SSF47072       
SSF57567   SSF57567       

Gene 3D

1.10.8.720     1.20.140.100     3.20.180.20    

ProteinModelPortal

H9J285   A0A2H1X2P9   A0A2A4JJP5   A0A0N1ID47   A0A212FLC8   A0A1B6DVH7   + More
A0A2J7PBF2   A0A2J7PBE9   A0A2J7RTB7   A0A2J7RTB8   A0A034UZR8   A0A2J7RTA3   A0A2J7RTA2   A0A0A9Y300   A0A2J7RTA7   A0A2J7RT97   A0A139WPL9   D6W7L1   A0A182SWG7   A0A1B0EYP6   E0VLA6   W8CAW5   A0A1J1IHV8   A0A2M4DP19   A0A232F8L3   A0A182V866   B0WUU8   A0A182IVR3   A0A1B6GIG4   A0A182YIP1   W5J456   A0A084VZI7   A0A182MNY4   A0A182LNA0   A0A2M4A0B6   A0A182FM39   A0A182NDL4   A0A1S4H4T4   A0A182W3T1   A0A182WR89   A0A182JRE6   A0A182PVS5   A0A182HX97   A0A182QB97   Q5TUD8   A0A182RBC6   A0A182TS04   A0A0M9AA00   A0A1S4FKM6   Q16XH8   A0A154PPG4   A0A182GMZ9   A0A336KXF6   A0A1W4X3T6   U4UMC9   A0A0R3NKH1   Q293J4   A0A336M9T6   A0A2S2QK24   N6U0M0   A0A0L7QYM1   E9IZF0   A0A1A9WGW2   A0A310S6L6   A0A1I8PWQ2   A0A195CXR3   A0A151JQJ9   A0A151JXC9   A0A1B0G9S0   A0A3B0JSI1   A0A1A9UNH8   A0A1A9XQ49   A0A1A9ZDG9   A0A0R1E127   A0A0B4KHJ4   A0A0R1E5P0   Q9VDG0   A0A1I8M6W5   A0A0R1E1G1   B3P2Z8   A0A0R1E125   B4IKM6   A0A1B0BD95   A0A195AUI3   A0A1I8M6W0   B4PQ99   B4R1N9   A0A0P8Y0J0   A0A1W4VZS9   A0A1W4VLP2   B3M2X7   B4M4V0   A0A158P169   A0A0L0BTW6   A0A0J7P079   B4JSY1   E2BE63   A0A151WVZ6   B4KE24   E2AYZ0  

PDB

3VKH     E-value=1.14434e-19,     Score=233

KEGG

101743793    K10408 dynein heavy chain, axonemal | (RefSeq) dynein beta chain, ciliary-like

GO

GO:0003777   GO:0005524   GO:0007018   GO:0030286   GO:0016021   GO:0016887   GO:0045505   GO:0008569   GO:0005930   GO:0045503   GO:0051959   GO:0007605   GO:0003341   GO:0036157   GO:0005875   GO:0042623   GO:0015379   GO:0003909   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

PANTHER

PTHR10676  

Length:

187

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.03234

Exp number, first 60 AAs:

1.02902

Total prob of N-in:

0.15572

outside

1  -  187

 

 

Pi

82.308757

Theta

187.141398

Tajima's D

-1.781948

CLR

1443.525233

CSRT

0.0303984800759962

Interpretation

Possibly Positive selection