Gene

KWMTBOMO02975  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003578

Annotation

PREDICTED:_leucine-rich_PPR_motif-containing_protein?_mitochondrial-like_[Amyelois_transitella]

Location

Bomo_Chr5(+):14791704-14804644      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.76

CDS

ATGATGTGGACTCGTCAAGGAATTAGGATTATGAACTCCAATAGAGCTAAGTTCTTTAAAAATATTCAAACGAATCGGGCAAATATTGGATGTCCGTGTCGATCCCATGCACAAAGGCGCATCTCAAATGCAGCAATCAATAAATGTTCTGTGAACCTATCAAGCGGTCGCGGAAATATTTCACAAACAGTCTCTACTGAATTTCTGAAGAATACTGATAGAATGTCATCTGAAGAACTTTTAGAGAAATTAATAGCTGGATTATCCACGGATATACATCAGAAAAATAGAGTATACAAGAATGATTTAATGAGAGTTATAAACAGAGTAAAAGAAATGAATTTTTCAACCAAAAAACAGGGTTTGCTACTGCTTAGGTGCTGCACGGAATTACTACCTGACGAAACTCCTTCAGCTCGAATGGCTTTAGTTGAATTAGTTTGGAATACTTTAAAGCCCCATACGAAATTTCAAGTGGATCATTACAATGAGTTGTTGCAAGCTTATATAGCAAATAATAGAACAATCGTAGTGACTACATTTATCAACAAAATGCTGCCTGTAAAACCTAACATCACTACTTATGAGTTGATCATAAGAGCCCTAGGGGAGGCGGGTGATCTAAATCAAGCAACCGAAGTATTGTCTAATATGAAAGCACAGAACTTGCCTGCTACCGAGAATATATTCAATTCACTGATTATAGGCCAAGGAAAAGCAGGTAATCTTCAAAACATTCAAGAAGTATTGACAATGATGAAATCCGTTAAACTGAAACAATCAATCGAAACATACACTGCTGTTGCTCGTGCATTAGCCTGGAATAAAGAGGATGGTCCGCTCCTGAAGGAAATGGATCAGACAATAAAAAATGGGTTTCAGTTTGAGGAAAGGCATATTATGGAGATTGTGAAGACCCTAGCTGTTGTTGGAAGCTATAAAACAATACCTCAGGTCCTCAAATATCTTCCAGAAGGGACATTACAGACACCATCAATATCACCGTACATGCAGAGTGTATGTACATTACTAGTCTTTCAAAATCATCCTATGGCAGCCCTGGAGATATATAAGTGTCTTCCATTACCTTCGTTTGGTCCTAAAGATGACCAAGGACTGCACGGTCGGAGTCTGGTCAGGGATTGTGTTAAAGCTGCAATGCCATCCAGCGTAATAGGATTAATAACACAAGAACTGATGGCATCAGGCAGAAATCCAATAGCTCTCCACAATGCTACCGAGGCAGCTCTTCAACTAGGGAAAATACCACTCTCTTTGGATTTATTCACAAGAATGAAACAGCTGGGAATGCCTCTCAGGCCTCATTATTTTTGGCCAATCTTGATTACTAATTCTAAGAGCTACGGAGAGAAAGGTATAATGAGCGTATTGTCAACAATGATCGAAATGGACGTCAAACCTGATTACGAGACGATAATGTCGTACACGCTCCCATTCGTGAGTTTCACGTCGCCACAGAACTTGATGAAGAAGTTCCTCGACGCCGGTCTGACGGTGACGACGGTGCTGACTCCCATGATGGAGAGCCTCCTCAACACCGGCCAGGTCCGGGCTGCTAGTGAGATATGTGAACTTTTTAATGGCAAAGTCGATGTGGAAATAATTTTAAAACCATTGCTTAGAGGTTATTTGACGAACGGTGATGTAAAGTCGACGGTTCACATACTAGAGGACGTTTTAAAAAAGGGCTCGGAGAATAAAGACTGGATCGGGAGATTTCTCTGTTGCTTCATTAATCACAAGAAGGTTATGGAGGATCTCACTGATTTTTTTACTTTGGTGCAGGAATTGAAAAATGAAAATTTAAAAATTTCCACATCGGCTTCGGATTATTGCGTATCTCGTTTACCGAATACGCACAGCGATGCCGAGATCGAACGATTCAGGAGCGGCCTCGCCGAGATAACCGACGAGACGCTGGTCGACGACGGCGAGATGTTCGCGCACCAGCCGCCCCATCCCAAAAACATGAATGAAGCATCGTTAAAGGCTCACTTGAGCGAACTGGAAGCGAAGAACATGAACACGCGCGGCGTCTTAAGGAGACTGCTGCAGCAATATTGTAAAGAAGGGAATCTGAAAGCTGCGAAGGAGGTTGCTGAGAAATGTCAAAAAGAAGGAGTATTCCTGTCTGCGGGTATGAAAGCATCAATATTCGATCTCCACGTGAAACTAGGAGAGCTGGAGCTAGCCGAGCTCACCCTAGCGGATCTAAACAAGACGTCGCCGAATTTCACTTTGGACGAATTTAAAGTTATCGACTTTGCCACGCTGATGGTTTACAGGAAGAGAATTAAACAAGCCACGGAGTTATTGAACGAACAGTCAAAGAAGAGACGCATCATAGGTGGTCGCGGTATAATAATGAATTGCTGGCGTCTGTTAGACGCGACCGCGGCCAATGGCTCCCCCGAAGACGTACGGAAGATGCTCGAGACGCTGACGGCGCTGCGTTACTGCAAGCCCAACAACGTGCTTCTCGGTCCGTTGGTGCGCGTGCACTTGAAGAATGATAACTTAGAAGAGGCCCTGAATGAATTCGTTCGTCTTGCCAAACAGTACAGCATGACGCCGTTGAAACACGAGTTGCTTTGTAAGATTTTGGAAGCGATGGGTGACGGAAGATCCGAAGACAATTTCATTATACACGAAAGGAGTAATAGCAGACTCAATAAAATGGCACAGACCATACTGAATACAGACAGGAAGGTGCACGGAGCCAGCGATGTCCAACTAACTCTAATAGCTGCACTAGCCGAAGTGGGATACAAGAAGACGATTCGAAAGCTCTTCCTCGATCCAAAAGTGAACTTTCACCCGGAGGCGTTGTACCGTCGCTGCGAACGCTTCGCTGACGAGAAGAAGTTGAAAGCTTTAGAATGTATCGCTGAATGCGCCCGCGACGTCAGGAGGGTTAACGTCGACGACATATATGAGTTAATGTTGGACGTGCACCAACGGGACGACAATTGTCAAGAAGCGCTGTCCCTGTGGACCAAAATGCAGGAAGCGGATGTGACGCCGTCGCAGAAATTCGTTCGAAACATTTGTTCGTTGCTCAAAGCGAACAACAGAACCGTACCGTCAGAATTAAGCTTACTGTTAGATAAACAAGACAAAGTAACAAGCGTTTTGAGTACTTAA

Protein

MMWTRQGIRIMNSNRAKFFKNIQTNRANIGCPCRSHAQRRISNAAINKCSVNLSSGRGNISQTVSTEFLKNTDRMSSEELLEKLIAGLSTDIHQKNRVYKNDLMRVINRVKEMNFSTKKQGLLLLRCCTELLPDETPSARMALVELVWNTLKPHTKFQVDHYNELLQAYIANNRTIVVTTFINKMLPVKPNITTYELIIRALGEAGDLNQATEVLSNMKAQNLPATENIFNSLIIGQGKAGNLQNIQEVLTMMKSVKLKQSIETYTAVARALAWNKEDGPLLKEMDQTIKNGFQFEERHIMEIVKTLAVVGSYKTIPQVLKYLPEGTLQTPSISPYMQSVCTLLVFQNHPMAALEIYKCLPLPSFGPKDDQGLHGRSLVRDCVKAAMPSSVIGLITQELMASGRNPIALHNATEAALQLGKIPLSLDLFTRMKQLGMPLRPHYFWPILITNSKSYGEKGIMSVLSTMIEMDVKPDYETIMSYTLPFVSFTSPQNLMKKFLDAGLTVTTVLTPMMESLLNTGQVRAASEICELFNGKVDVEIILKPLLRGYLTNGDVKSTVHILEDVLKKGSENKDWIGRFLCCFINHKKVMEDLTDFFTLVQELKNENLKISTSASDYCVSRLPNTHSDAEIERFRSGLAEITDETLVDDGEMFAHQPPHPKNMNEASLKAHLSELEAKNMNTRGVLRRLLQQYCKEGNLKAAKEVAEKCQKEGVFLSAGMKASIFDLHVKLGELELAELTLADLNKTSPNFTLDEFKVIDFATLMVYRKRIKQATELLNEQSKKRRIIGGRGIIMNCWRLLDATAANGSPEDVRKMLETLTALRYCKPNNVLLGPLVRVHLKNDNLEEALNEFVRLAKQYSMTPLKHELLCKILEAMGDGRSEDNFIIHERSNSRLNKMAQTILNTDRKVHGASDVQLTLIAALAEVGYKKTIRKLFLDPKVNFHPEALYRRCERFADEKKLKALECIAECARDVRRVNVDDIYELMLDVHQRDDNCQEALSLWTKMQEADVTPSQKFVRNICSLLKANNRTVPSELSLLLDKQDKVTSVLST

Uniprot

H9J241   A0A194PP45   A0A2H1V1U4   A0A212FGJ3   A0A067R170   A0A1B0DFR3   + More
A0A1B0CPV6   A0A1A9VUQ3   B4N1K3   A0A1B0A114   A0A182MJ40   A0A131Y1Z0   A0A182R6A2   Q177S8   V5HPA4   A0A182K6C2   A0A1Y1KU24   A0A1B0GEN7   A0A0L0C8A7   V5HES1   A0A1Y1KWA2   A0A1A9XA70   A0A067RKI5   A0A2M4BBQ6   A0A2M4BBP7   A0A2M4BBQ3   A0A182VZ39   A0A182QNI1   A0A1B0AMX2   A0A2J7PMX8   A0A1I8NWD3   A0A084VTW9   A0A2M4CJI2   A0A1A9WFX4   A0A3B0JW54   A0A182I029   B3MRX3   A0A182PRI0   Q7PYP1   A0A182V4P0   A0A182UAG6   A0A182YAS8   A0A182XB86   A0A182T6K4   B3P9I1   A0A336LE13   A0A182LH40   C3KGM3   Q5BIM0   V5P006   Q9W592   A0A1I8N9R2   A0A336MTM1   A0A182GIC3   B0W4B9   D2A3F7   A0A182IME0   B4LTB6   Q29J03   B4G971   A0A182FQQ8   Q29MI0   B4P9U4   A0A2R5LMV3   A0A0Q9WYE3   B4I5G8   A0A1W0WGU6   A0A3B0K080   B4Q8G4   W8AAS6   B3NMB3   A0A1W4VTE9   A0A182N463   A0A0M4EA80   Q95NR4   A0A0A1XJY7   A0A1W4VM47   Q9VJ86   A0A1Y1KFU1   B4I9E3   A0A0T6AZJ1   A0A034VWI5   U4U500   A0A2H8TGU9   A0A034VAI6   A0A1W4X312   A0A182F2S9   A0A2M4B9G2   A0A2M4B9B7   A0A1B6JLE4   A0A2M4B9E5   A0A0M4EX50   A0A2M3ZFY0   A0A0K8W6S9   W5J4P5  

Pubmed

19121390    26354079    22118469    24845553    17994087    17510324    + More
25765539    28004739    26108605    24438588    12364791    14747013    17210077    25244985    20966253    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25315136    26483478    18362917    19820115    15632085    17550304    22936249    24495485    11313472    25830018    25348373    23537049    20920257    23761445   

EMBL

BABH01007475    KQ459597    KPI95082.1    ODYU01000300    SOQ34807.1    AGBW02008676    + More
OWR52823.1    KK852780    KDR16655.1    AJVK01058936    AJWK01022678    CH963925    EDW78242.1    AXCM01001079    GEFM01003416    JAP72380.1    CH477371    EAT42440.1    GANP01006971    JAB77497.1    GEZM01073737    JAV64893.1    CCAG010012466    JRES01000754    KNC28673.1    GANP01012540    JAB71928.1    GEZM01073752    JAV64858.1    KK852572    KDR21105.1    GGFJ01001335    MBW50476.1    GGFJ01001333    MBW50474.1    GGFJ01001334    MBW50475.1    AXCN02000028    JXJN01000634    NEVH01023960    PNF17691.1    ATLV01016524    KE525092    KFB41413.1    GGFL01001231    MBW65409.1    OUUW01000011    SPP86284.1    APCN01002042    CH902622    EDV34528.1    AAAB01008987    EAA01251.4    CH954183    EDV45477.1    UFQS01002969    UFQT01002969    SSX14991.1    SSX34377.1    BT082088    ACP44290.1    BT021204    AAX33352.1    BT150402    AHA95706.1    AE014298    AL035632    AAF45626.1    CAB38464.1    UFQS01002438    UFQT01002438    SSX14041.1    SSX33460.1    JXUM01166157    KQ576194    KXJ67811.1    DS231836    EDS33204.1    KQ971338    EFA01919.1    CH940649    EDW64958.1    CH379063    EAL32499.1    CH479180    EDW28901.1    CH379060    EAL33714.2    CM000158    EDW90285.1    GGLE01006693    MBY10819.1    CH933810    KRF94009.1    CH480822    EDW55624.1    MTYJ01000105    OQV14419.1    OUUW01000004    SPP79016.1    CM000361    CM002910    EDX05374.1    KMY90804.1    GAMC01021620    JAB84935.1    CH954179    EDV54784.1    CP012523    ALC40190.1    AF327844    AY058795    AAK50882.1    AAL14024.1    GBXI01003006    JAD11286.1    AE014134    BT150103    AAF53668.2    AGL96299.1    GEZM01087778    JAV58485.1    CH480825    EDW43824.1    LJIG01022493    KRT80285.1    GAKP01013049    JAC45903.1    KB632031    ERL88152.1    GFXV01000703    MBW12508.1    GAKP01020379    JAC38573.1    GGFJ01000490    MBW49631.1    GGFJ01000488    MBW49629.1    GECU01007719    JAS99987.1    GGFJ01000489    MBW49630.1    CP012528    ALC48217.1    GGFM01006652    MBW27403.1    GDHF01005714    JAI46600.1    ADMH02002211    ETN57784.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000027135    UP000092462    UP000092461    + More
UP000078200    UP000007798    UP000092445    UP000075883    UP000075900    UP000008820    UP000075881    UP000092444    UP000037069    UP000092443    UP000075920    UP000075886    UP000092460    UP000235965    UP000095300    UP000030765    UP000091820    UP000268350    UP000075840    UP000007801    UP000075885    UP000007062    UP000075903    UP000075902    UP000076408    UP000076407    UP000075901    UP000008711    UP000075882    UP000000803    UP000095301    UP000069940    UP000249989    UP000002320    UP000007266    UP000075880    UP000008792    UP000001819    UP000008744    UP000069272    UP000002282    UP000009192    UP000001292    UP000000304    UP000192221    UP000075884    UP000092553    UP000030742    UP000192223    UP000000673   

PRIDE

H9J241    C3KGM3    Q5BIM0    V5P006    Q9W592    Q95NR4    + More
Q9VJ86   

Pfam

PF13812   PPR_3        + More
PF01535   PPR
PF17177   PPR_long
PF13041   PPR_2
PF12854   PPR_1
PF13851   GAS

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR033490   LRP130       
IPR002885   Pentatricopeptide_repeat       
IPR016024   ARM-type_fold       
IPR033443   PPR_long       
IPR025593   GAS8_dom       

SUPFAM

SSF48371   SSF48371        + More
SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9J241   A0A194PP45   A0A2H1V1U4   A0A212FGJ3   A0A067R170   A0A1B0DFR3   + More
A0A1B0CPV6   A0A1A9VUQ3   B4N1K3   A0A1B0A114   A0A182MJ40   A0A131Y1Z0   A0A182R6A2   Q177S8   V5HPA4   A0A182K6C2   A0A1Y1KU24   A0A1B0GEN7   A0A0L0C8A7   V5HES1   A0A1Y1KWA2   A0A1A9XA70   A0A067RKI5   A0A2M4BBQ6   A0A2M4BBP7   A0A2M4BBQ3   A0A182VZ39   A0A182QNI1   A0A1B0AMX2   A0A2J7PMX8   A0A1I8NWD3   A0A084VTW9   A0A2M4CJI2   A0A1A9WFX4   A0A3B0JW54   A0A182I029   B3MRX3   A0A182PRI0   Q7PYP1   A0A182V4P0   A0A182UAG6   A0A182YAS8   A0A182XB86   A0A182T6K4   B3P9I1   A0A336LE13   A0A182LH40   C3KGM3   Q5BIM0   V5P006   Q9W592   A0A1I8N9R2   A0A336MTM1   A0A182GIC3   B0W4B9   D2A3F7   A0A182IME0   B4LTB6   Q29J03   B4G971   A0A182FQQ8   Q29MI0   B4P9U4   A0A2R5LMV3   A0A0Q9WYE3   B4I5G8   A0A1W0WGU6   A0A3B0K080   B4Q8G4   W8AAS6   B3NMB3   A0A1W4VTE9   A0A182N463   A0A0M4EA80   Q95NR4   A0A0A1XJY7   A0A1W4VM47   Q9VJ86   A0A1Y1KFU1   B4I9E3   A0A0T6AZJ1   A0A034VWI5   U4U500   A0A2H8TGU9   A0A034VAI6   A0A1W4X312   A0A182F2S9   A0A2M4B9G2   A0A2M4B9B7   A0A1B6JLE4   A0A2M4B9E5   A0A0M4EX50   A0A2M3ZFY0   A0A0K8W6S9   W5J4P5  

PDB

4OZS     E-value=5.06892e-06,     Score=124

KEGG

101737215    K17964 leucine-rich PPR motif-containing protein, mitochondrial | (RefSeq) leucine-rich PPR motif-co

GO

GO:1903108   GO:0005739   GO:0022400   GO:0070129   GO:0044528   GO:0002082   GO:0033617   GO:0034551   GO:0097222   GO:0003730   GO:0031673   GO:0030018   GO:0031426   GO:0032981   GO:1903862   GO:0048870   GO:0031514   GO:0008017   GO:0017137   GO:0005737   GO:0005515  

PANTHER

PTHR46669  

Length:

1054

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00869999999999996

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00037

outside

1  -  1054

 

 

Pi

281.409702

Theta

161.759331

Tajima's D

2.555755

CLR

0.563982

CSRT

0.951602419879006

Interpretation

Uncertain