Gene

KWMTBOMO02969

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(-):14705243-14707153      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.32

CDS

ATGTCAGAGCTCGACTCAGACCACCGACCTGTCGTTATGCAGCTCGGTCGCCCTCACAACCCAGTCACTGTTACGAGGACCATGGTGGATTGGAATAAGCTGGGCACGTGCCTAGCCGACGCCGCTCCGCCAATCCTCCCTTACGGCCCGGATTCGAATCCATCCCCCGAGGACACCGTCGAATCCATAAACATCATTACCGATCACATCTCTTCCGCGATCATTAGATCTTCAAAAGAAGTCGATGTGGAGGATAGCTTCCACCGCATCAGACTGTCCCCCGATCTTAGGAATCTCTTAAGAGTTAGGAACGCGGCAATCCGGGCCTACGATCGTCTTCCCACGCATTCAAACCGGATTCAGATGCGTCGTCTACAACGCGAAGTCCACTCCCGCTTAAGCGACGCGCGTAACGATAATTGGCATAGTTATTTAGAACAACTCGCGCCCTCCCACCAAGCATACTGGCGACTAGCTAGGACTCTCAAATCCGAAACTACCGCTACTATGCCTCCCCTCATACGCCCTTCAGGCCAACCACCGGCATTCGATGACGATGACAAGGCTGAGCTGCTGCCCGATGCACTGCAAGAGCAGTGCACCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGGGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTGACGAAGTTAGAGACGCGATCCACAACCTCCAACCTAGGAAGGCACCCGGCTCCAACGGCATCCACAACCGCGCGCTAAAACTCTTGCCAGTCCAACTGATAGCAATGTTGGCTACAATTTTAAATGCCGCTATGACGCACTGCATCTTTCCCGCGGTGTGGAAAGAAGCGAACGTTATCGGTATACATAAGCCGGGCAAACCGACAAACGAAACTTCTAGTTACCGTCCGATTAGTCTCCTCCCGACGATAGGAAAAATTTACGAACGGCTCCTTAGGAAACGCCTCTGGGATTTTGTTACCGCGAACAAAATTCTCATAGACGAACAGTTCGGATTCCGCTCTAAACACTCGTGCGTACAACAAGTGCACCGCCTCACGGAGCACATTCTGATAGGACTAAATAGGCGTAAACAAATCCCGACCGGCGCCCTCTTCTTCGATATCGCGAAGGCGTTCGACAAAGTCTGGCACAACGGTTTAATTTACAAACTGTACAACATGGGAGTGCCAGACAGACTCGTGCTCATCATACGAGACTTCTTGTCGAACCGTTCGTTTCGATATCGAGTAGAGGGAACTCGTTCTCGTCCCCGTCAACTGCCGGAGTCCCGCAAGGCTCCGCGCTCTCCCCGTTATTATTTAGTTTGTATATCAATGATATACCCCGGTCTCCGGAGACCCATCTAG

Protein

MSELDSDHRPVVMQLGRPHNPVTVTRTMVDWNKLGTCLADAAPPILPYGPDSNPSPEDTVESINIITDHISSAIIRSSKEVDVEDSFHRIRLSPDLRNLLRVRNAAIRAYDRLPTHSNRIQMRRLQREVHSRLSDARNDNWHSYLEQLAPSHQAYWRLARTLKSETTATMPPLIRPSGQPPAFDDDDKAELLPDALQEQCTTSTQHADPEHTELVDREVERRASLPPSDALPPITTDEVRDAIHNLQPRKAPGSNGIHNRALKLLPVQLIAMLATILNAAMTHCIFPAVWKEANVIGIHKPGKPTNETSSYRPISLLPTIGKIYERLLRKRLWDFVTANKILIDEQFGFRSKHSCVQQVHRLTEHILIGLNRRKQIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLPESRKAPRSPRYYLVCISMIYPGLRRPI

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A139W8G9   + More
A0A139WA11   A0A1Y1NA23   V5GNJ2   A0A023EYS8   A0A2S2QEE0   A0A2S2PEZ9   A0A2S2Q352   Q07995   V9H092   A0A3N5Z7I3   K7IN67   A0A087UCW3   A0A2S2NPT6   A0A2H8U0H5   A0A2S2PPK8   A0A2S2PA10   A0A2S2PX53   A0A2J7R7D0   A0A087THU2   J9KLB1   A0A1B0CHA5   A0A087U3K8   J9LC21   A0A232ENU1   A0A2S2NCK2   A0A1Y1K0C8   J9KKL3   A0A023EW17   A0A087T3W0   X1WXE6   D7GYA5   A0A2S2R9D4   A0A2S2PWA8   A0A2S2P698   A0A2S2NGV8   J9M522   A0A224X6Q4   X1WZH0   X1WR00   X1WKS2   J9K7I4   A0A224X6U5   A0A2S2N629   A0A2M4BEF4   A0A2S2NJB5   A0A2M4BEZ9   A0A2S2N9P4   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A224XF24   A0A224XI99   A0A2S2P3X8   A0A224XJI0   A0A023F6S4   A0A1W7R655   A0A1Y1LKN6   A0A1Y1KFT3   A0A2S2Q2R8  

Pubmed

10333566    26354079    10380107    18362917    19820115    28004739    + More
25474469    8387152    9061921    30086797    20075255    28648823    24945155   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GEZM01008457    JAV94772.1    GALX01005299    JAB63167.1    GBBI01004395    JAC14317.1    GGMS01006359    MBY75562.1    GGMR01015412    MBY28031.1    GGMS01002955    MBY72158.1    S59870    AAB26437.2    L79944    AAB04627.1    RPOV01000134    RPJ78669.1    KK119261    KFM75202.1    GGMR01006581    MBY19200.1    GFXV01007093    MBW18898.1    GGMR01018716    MBY31335.1    GGMR01013409    MBY26028.1    GGMS01000737    MBY69940.1    NEVH01006736    PNF36716.1    KK115285    KFM64681.1    ABLF02040174    ABLF02040183    ABLF02055266    AJWK01012157    KK118005    KFM71947.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    NNAY01003095    OXU19992.1    GGMR01002322    MBY14941.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02029306    ABLF02029314    ABLF02060138    GAPW01000276    JAC13322.1    KK113281    KFM59799.1    ABLF02016634    KQ973363    EFA13335.2    GGMS01017365    MBY86568.1    GGMS01000625    MBY69828.1    GGMR01012305    MBY24924.1    GGMR01003407    MBY16026.1    ABLF02024246    GFTR01008279    JAW08147.1    ABLF02034467    ABLF02003242    ABLF02006260    ABLF02042516    ABLF02005245    ABLF02013477    ABLF02047385    ABLF02066435    ABLF02017543    ABLF02017549    ABLF02017551    ABLF02021996    GFTR01008251    JAW08175.1    GGMR01000005    MBY12624.1    GGFJ01002256    MBW51397.1    GGMR01004661    MBY17280.1    GGFJ01002257    MBW51398.1    GGMR01000857    MBY13476.1    GGFJ01001842    MBW50983.1    GGFJ01001844    MBW50985.1    GGFJ01001843    MBW50984.1    GFTR01008038    JAW08388.1    GFTR01008256    JAW08170.1    GGMR01011511    MBY24130.1    GFTR01008257    JAW08169.1    GBBI01001646    JAC17066.1    GEHC01001034    JAV46611.1    GEZM01053022    JAV74219.1    GEZM01084970    JAV60359.1    GGMS01002786    MBY71989.1   

Proteomes

UP000053268    UP000007266    UP000002358    UP000054359    UP000235965    UP000007819    + More
UP000092461    UP000215335   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF07727   RVT_2
PF10551   MULE

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013103   RVT_2       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A139W8G9   + More
A0A139WA11   A0A1Y1NA23   V5GNJ2   A0A023EYS8   A0A2S2QEE0   A0A2S2PEZ9   A0A2S2Q352   Q07995   V9H092   A0A3N5Z7I3   K7IN67   A0A087UCW3   A0A2S2NPT6   A0A2H8U0H5   A0A2S2PPK8   A0A2S2PA10   A0A2S2PX53   A0A2J7R7D0   A0A087THU2   J9KLB1   A0A1B0CHA5   A0A087U3K8   J9LC21   A0A232ENU1   A0A2S2NCK2   A0A1Y1K0C8   J9KKL3   A0A023EW17   A0A087T3W0   X1WXE6   D7GYA5   A0A2S2R9D4   A0A2S2PWA8   A0A2S2P698   A0A2S2NGV8   J9M522   A0A224X6Q4   X1WZH0   X1WR00   X1WKS2   J9K7I4   A0A224X6U5   A0A2S2N629   A0A2M4BEF4   A0A2S2NJB5   A0A2M4BEZ9   A0A2S2N9P4   A0A2M4BDA5   A0A2M4BD66   A0A2M4BD62   A0A224XF24   A0A224XI99   A0A2S2P3X8   A0A224XJI0   A0A023F6S4   A0A1W7R655   A0A1Y1LKN6   A0A1Y1KFT3   A0A2S2Q2R8  

KEGG

101735531    no KO assigned | (RefSeq) uncharacterized LOC101735531

GO

GO:0003964   GO:0004519   GO:0016021  

Length:

465

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.31173

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01517

outside

1  -  465

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

5.117436

CSRT

0

Interpretation

Uncertain