Gene

KWMTBOMO02967

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr5(+):14631735-14633359      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.497 Nuclear   Reliability : 1.125

CDS

ATGAAGCTCGGTCGCGCTCCCGATTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCCCTCCCGTTTAACCCGGACTCTACCCCGTCTCCTCAGGATACCGCTGAAGCCATAGACATCTTAACATCACACATCACCTCGACATTAGATAGGTCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGACGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACAGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGTCTCGCGGCCTTTGATGATGACGAAAAAGCAGAGCTGCTGGCCGATACATTGCAAACCCAGTGCACGCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGGTAGAACGCAGAGCCTCCTTGCCACCCTCGGATGCGTTACCACCCGTCACCCCGATGGAAGTTAAAGACTTGATCAAAGACCTACGTCCTCGCAAGGCTCCCGGTTCCGACGGTATATCCAACCGCGTTATTAAACTTCTACCCGTCCAACTCATCGTGATGTTGGCATCTATTTTCAATGCCGCTATGGCGAACTGTATCTTTCCCGCGGTGTGGAAAGAAGCGGACGTTATCGGCATACATAAACCCGGTAAACCAAAAAATCATCCGACGAGTTACCGCCCGATTAGCCTCCTCATGTCTCTAGGCAAGCTGTATGAGCGTCTGCTCTACAAGCGCCTCAGAGATTTCGTCTCATCCAAGGGCATTCTCATCGATGAACAATTCGGATTCCGTACAAATCACTCATGCGTTCAACAGGTGCACCGCCTCACGGAGCACATTCTTGTGGGGCTTAATCGACCAAAACCGTTATACACGGGAGCTCTCTTCTTCGACGTCGCAAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATTTTCAAACTATTCAACATGGGCGTGCCGGATAGTCTCGTGCTCATCATACGGGACTTCTTGTCGAACCGCTCTTTTCGATATCGAGTCGAGGGAACCCGCTCCTCCCCACGACCTCTCACAGCTAGAGTCCCGCAAGGCTCTGTCCTCTCACCCCTCCTATTTAGCTTATTCGTCAACGATATTCCCCGGTCGCCGCCGACCCATTTAGCTTTATTCGCCGACGACACGACTGTTTACTATTCTAGTAGAAATAAGTCCCTAATCGCGAAGAAGCTTCAGAGCGCAGCCCTAGCCCTAGGACAGTGGTTCCGAAAATGGCGCATAGACATCAACCCAGCGAAAAGTACTGCGGTGCTAGGTATTTCAGAGGGGAAGCTCCACACGGATTTCCTCCCGGATTAG

Protein

MKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSTPSPQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSEVERRASLPPSDALPPVTPMEVKDLIKDLRPRKAPGSDGISNRVIKLLPVQLIVMLASIFNAAMANCIFPAVWKEADVIGIHKPGKPKNHPTSYRPISLLMSLGKLYERLLYKRLRDFVSSKGILIDEQFGFRTNHSCVQQVHRLTEHILVGLNRPKPLYTGALFFDVAKAFDKVWHNGLIFKLFNMGVPDSLVLIIRDFLSNRSFRYRVEGTRSSPRPLTARVPQGSVLSPLLFSLFVNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLGISEGKLHTDFLPD

Uniprot

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   A0A139WA11   V5GNJ2   A0A2S2Q352   D7EM17   A0A2S2QEE0   A0A2S2PR14   K7IN67   V5GNF3   A0A2H8U0H5   A0A0C9RJA4   J9KKL3   J9JS95   J9LC21   X1WLB2   A0A1B6J5Z9   J9KLB1   X1WXE6   A0A023EYS8   A0A3N5Z7I3   A0A2S2RAN7   A0A2S2PWA8   A0A2S2NJB5   A0A224XF24   J9KCZ4   J9KEU4   A0A2S2PPK8   X1WN18   X1WZH0   X1WNI2   A0A2S2PBB4   J9KPF1   A0A2S2R9D4   J9KC83   Q07995   A0A2J7R7D0   A0A2S2PA10   A0A2J7QUJ9   A0A224XB44   V9H092   A0A2S2NGV8   A0A2J7PU96   A0A2J7RPU2   A0A023F700   A0A2J7RKP3   A0A087U3K8   A0A2J7R2E1   A0A232ENU1   A0A2J7QFL0   A0A087UCW3   A0A2S2N814   A0A2J7RE85   A0A023F6S4   A0A2J7Q0Q6   A0A224X7Z3   J9M522  

Pubmed

10333566    26354079    10380107    28004739    18362917    19820115    + More
20075255    25474469    30086797    8387152    9061921    28648823   

EMBL

U07847    AAA17752.1    AB018558    BAA76304.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GALX01005299    JAB63167.1    GGMS01002955    MBY72158.1    KQ973412    EFA12510.2    GGMS01006359    MBY75562.1    GGMR01019198    MBY31817.1    GALX01005359    JAB63107.1    GFXV01007093    MBW18898.1    GBYB01008290    JAG78057.1    ABLF02029306    ABLF02029314    ABLF02060138    ABLF02028535    ABLF02028545    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02042518    ABLF02057746    GECU01013097    JAS94609.1    ABLF02040174    ABLF02040183    ABLF02055266    ABLF02016634    GBBI01004395    JAC14317.1    RPOV01000134    RPJ78669.1    GGMS01017914    MBY87117.1    GGMS01000625    MBY69828.1    GGMR01004661    MBY17280.1    GFTR01008038    JAW08388.1    ABLF02008463    ABLF02040650    ABLF02040651    ABLF02056776    GGMR01018716    MBY31335.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02034467    ABLF02008153    ABLF02008462    ABLF02008464    GGMR01014053    MBY26672.1    ABLF02041767    GGMS01017365    MBY86568.1    ABLF02033757    S59870    AAB26437.2    NEVH01006736    PNF36716.1    GGMR01013409    MBY26028.1    NEVH01010546    PNF32261.1    GFTR01008262    JAW08164.1    L79944    AAB04627.1    GGMR01003407    MBY16026.1    NEVH01021205    PNF19912.1    NEVH01001355    PNF42855.1    GBBI01001699    JAC17013.1    NEVH01002716    PNF41415.1    KK118005    KFM71947.1    NEVH01007838    PNF34986.1    NNAY01003095    OXU19992.1    NEVH01014858    PNF27387.1    KK119261    KFM75202.1    GGMR01000676    MBY13295.1    NEVH01005277    PNF39135.1    GBBI01001646    JAC17066.1    NEVH01019964    PNF22161.1    GFTR01007929    JAW08497.1    ABLF02024246   

Proteomes

UP000053268    UP000007266    UP000002358    UP000007819    UP000235965    UP000054359    + More
UP000215335   

PRIDE

Q93137    Q9XXW0    Q9BPQ0   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF10551   MULE
PF07727   RVT_2

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR006579   Pre_C2HC_dom       
IPR013083   Znf_RING/FYVE/PHD       
IPR018289   MULE_transposase_dom       
IPR013103   RVT_2       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q93137   Q9XXW0   Q9BPQ0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
A0A139W8G9   A0A139WA11   V5GNJ2   A0A2S2Q352   D7EM17   A0A2S2QEE0   A0A2S2PR14   K7IN67   V5GNF3   A0A2H8U0H5   A0A0C9RJA4   J9KKL3   J9JS95   J9LC21   X1WLB2   A0A1B6J5Z9   J9KLB1   X1WXE6   A0A023EYS8   A0A3N5Z7I3   A0A2S2RAN7   A0A2S2PWA8   A0A2S2NJB5   A0A224XF24   J9KCZ4   J9KEU4   A0A2S2PPK8   X1WN18   X1WZH0   X1WNI2   A0A2S2PBB4   J9KPF1   A0A2S2R9D4   J9KC83   Q07995   A0A2J7R7D0   A0A2S2PA10   A0A2J7QUJ9   A0A224XB44   V9H092   A0A2S2NGV8   A0A2J7PU96   A0A2J7RPU2   A0A023F700   A0A2J7RKP3   A0A087U3K8   A0A2J7R2E1   A0A232ENU1   A0A2J7QFL0   A0A087UCW3   A0A2S2N814   A0A2J7RE85   A0A023F6S4   A0A2J7Q0Q6   A0A224X7Z3   J9M522  

KEGG

105842617    no KO assigned | (RefSeq) uncharacterized LOC105842617

GO

GO:0003964   GO:0004519  

Length:

519

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.14713

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04241

outside

1  -  519

 

 

Pi

19.424172

Theta

15.590896

Tajima's D

-0.669741

CLR

0.793066

CSRT

0.2016399180041

Interpretation

Uncertain