Gene

KWMTBOMO02940

Pre Gene Modal

BGIBMGA003633

Annotation

E3_ubiquitin-protein_ligase_Topors_[Papilio_xuthus]

Location

Bomo_Chr5(-):14201357-14204905      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.809

CDS

ATGGAGGCAGTGCCACAATCTGTTGATGATGTCTCTGATGCCAACTCTAGCAACATAAAAAATGACAACAGCAGTCAACACCATGAATCCAATAGTAGGGAATCACCTCCTCCTAACTGTGCAATATGTCTAGGAATGTGTCAAAACAAATCATTTACAGACTCTTGTTTGCACCAGTTTTGTTTTAAGTGTCTTGTAACATGGAGTAAGGTAAAAGCAGAATGCCCTTTATGCAAACAAAGCTTCAAAATAATAAAATACAATGTGATCAGCAGTTGTCAATTTGAAGAGTACAAAGTGGAAGAGCGCCAAAATGAAACAGTCGAAAGTGTTGTTATCGAAGCCCTGACAAGTATCTTGTTCAGTTACAGAACAATTCTGACATCTCAACACAATTCATTGGCCGTTGAAGACTTCTTGCTGCAACACTACCCACAGTCCTCAAACGCGTTAAGCCTGCCATCCCGCAGCAGATCTTCAGCCTCTTTTCGTCGCATCATCTACGAACGTAACTTACGGGCGCAACCTCTCCCCGATCACACCGGCCGCTTTCGAAATTGTAGTCCCGGATACTACAGGTACAATATGTTTGAAATATATCGCCTCGTTCCCTGGTTAAACAGGGAACTCAACTACTTACTGAATGAAAACGTCAGCCACATTTCTTACGTATTAATGCGAATTTTGGAAAGATTACTCCTCTATGACATAACTTCATCACAGTTTCGAGAAGCGATGCGACGCTTTTTCGGCGAGAGAACGGAACATTTCTTGCATGAGTTACACTGCTTTGCTACCTCTCCATATGATATGAATGGTTATGATCGTAATGTGCAATACACCACCGAATCGCGCGCGTTGACTATGGTCAATGAGGTAATATCTACTTCAGAATCGGACGGGAGCATTGACACCGACGTCGCTATGATACCGAATTCTGTGGCCGCTGAGCCTCCCGCCGGCCCTTCGGGGGTGCGACGAGCCCCGCCAAGAGCTGCTCTCGCAGCACATGCCGTCATGCCTATCGAAACCATCGCCAATTCCGACACCGACGACTCTTCAGAAGTGATGGTTGTTGGTTACATCAAGCCCCCGAAAGATCGAACACCGGAGCTGGTCGACCTGGTCGGCTCAGATAGTGATGTAGTTGTTGAGGAGAGTTCACGGGCCAAGTCTGGGCCGTCGGATACGAGACCGACGATCCCGCCTGTAAGTAAGCTCAAATTGAAGAGGAGCCGCGCTGGTGGGACGGAGTTGTCCGATTCGGATACGGACGACTCGTATCAATCACCAGCCCGTCGTCGTCGCCGACCTCGCATCTCGAACTCTGGTATGATGGCAAGCACGCATCGTACTACGCCAGAACCTACCTCCACCGCCTCAGAATACGACACTGCAGATGAGTTGACCCCTCCAAGTTAA

Protein

MEAVPQSVDDVSDANSSNIKNDNSSQHHESNSRESPPPNCAICLGMCQNKSFTDSCLHQFCFKCLVTWSKVKAECPLCKQSFKIIKYNVISSCQFEEYKVEERQNETVESVVIEALTSILFSYRTILTSQHNSLAVEDFLLQHYPQSSNALSLPSRSRSSASFRRIIYERNLRAQPLPDHTGRFRNCSPGYYRYNMFEIYRLVPWLNRELNYLLNENVSHISYVLMRILERLLLYDITSSQFREAMRRFFGERTEHFLHELHCFATSPYDMNGYDRNVQYTTESRALTMVNEVISTSESDGSIDTDVAMIPNSVAAEPPAGPSGVRRAPPRAALAAHAVMPIETIANSDTDDSSEVMVVGYIKPPKDRTPELVDLVGSDSDVVVEESSRAKSGPSDTRPTIPPVSKLKLKRSRAGGTELSDSDTDDSYQSPARRRRRPRISNSGMMASTHRTTPEPTSTASEYDTADELTPPS

Uniprot

A0A194PQ17   S4PXJ8   A0A2H1V0F9   A0A2A4K3K9   A0A2A4K488   A0A2W1BKF3   + More
A0A212FF06   A0A0L7KSU0   A0A232F510   A0A310S9I5   A0A0N0U7H3   E0VQ22   A0A088AMA8   K7J3U1   A0A2A3E8K0   A0A195C1T3   A0A1Z5LC42   A0A195DAZ3   A0A151K0G1   A0A2J7R2N0   A0A0L7RC51   F4WUF1   A0A151X7V5   A0A026W8T2   A0A0K2V0G4   A0A293LJB5   A0A2R5LI95   E2ASD1   A0A0C9QRK3   A0A0C9RHC3   A0A0N8C3G5   U4UG34   A0A023GFN8   A0A023EZ23   A0A224XJQ6  

Pubmed

26354079    23622113    28756777    22118469    26227816    28648823    + More
20566863    20075255    28528879    21719571    24508170    30249741    20798317    23537049    25474469   

EMBL

KQ459597    KPI95058.1    GAIX01004913    JAA87647.1    ODYU01000103    SOQ34299.1    + More
NWSH01000167    PCG78845.1    PCG78846.1    KZ149992    PZC75562.1    AGBW02008872    OWR52322.1    JTDY01006277    KOB66150.1    NNAY01000925    OXU25871.1    KQ762882    OAD55320.1    KQ435711    KOX79551.1    DS235389    EEB15478.1    KZ288340    PBC27784.1    KQ978344    KYM94807.1    GFJQ02002013    JAW04957.1    KQ981042    KYN10058.1    KQ981253    KYN44195.1    NEVH01007828    PNF35083.1    KQ414615    KOC68567.1    GL888359    EGI62177.1    KQ982431    KYQ56457.1    KK107335    QOIP01000013    EZA52465.1    RLU15183.1    HACA01026637    CDW43998.1    GFWV01004083    MAA28813.1    GGLE01005116    MBY09242.1    GL442284    EFN63665.1    GBYB01006324    GBYB01006325    GBYB01006327    JAG76091.1    JAG76092.1    JAG76094.1    GBYB01006326    JAG76093.1    GDIQ01118539    JAL33187.1    KB632173    ERL89566.1    GBBM01003635    JAC31783.1    GBBI01004731    JAC13981.1    GFTR01007604    JAW08822.1   

Proteomes

UP000053268    UP000218220    UP000007151    UP000037510    UP000215335    UP000053105    + More
UP000009046    UP000005203    UP000002358    UP000242457    UP000078542    UP000078492    UP000078541    UP000235965    UP000053825    UP000007755    UP000075809    UP000053097    UP000279307    UP000000311    UP000030742   

Pfam

PF00097   zf-C3HC4        + More
PF00096   zf-C2H2
PF00621   RhoGEF

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD       
IPR017907   Znf_RING_CS       
IPR018957   Znf_C3HC4_RING-type       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR035899   DBL_dom_sf       
IPR001849   PH_domain       
IPR000219   DH-domain       
IPR001331   GDS_CDC24_CS       
IPR011993   PH-like_dom_sf       

SUPFAM

SSF57667   SSF57667        + More
SSF48065   SSF48065       

Gene 3D

3.30.40.10     1.20.900.10     2.30.29.30    

CDD

cd00160  RhoGEF

ProteinModelPortal

A0A194PQ17   S4PXJ8   A0A2H1V0F9   A0A2A4K3K9   A0A2A4K488   A0A2W1BKF3   + More
A0A212FF06   A0A0L7KSU0   A0A232F510   A0A310S9I5   A0A0N0U7H3   E0VQ22   A0A088AMA8   K7J3U1   A0A2A3E8K0   A0A195C1T3   A0A1Z5LC42   A0A195DAZ3   A0A151K0G1   A0A2J7R2N0   A0A0L7RC51   F4WUF1   A0A151X7V5   A0A026W8T2   A0A0K2V0G4   A0A293LJB5   A0A2R5LI95   E2ASD1   A0A0C9QRK3   A0A0C9RHC3   A0A0N8C3G5   U4UG34   A0A023GFN8   A0A023EZ23   A0A224XJQ6  

PDB

1CHC     E-value=0.000143992,     Score=108

KEGG

101739647    K10631 E3 ubiquitin-protein ligase Topors [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase Topor

GO

GO:0016874   GO:0046872   GO:0003676   GO:0006355   GO:0035023   GO:0005089   GO:0035556   GO:0005515   GO:0008270   GO:0004672   GO:0006310   GO:0003909   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

Length:

473

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00448

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00246

outside

1  -  473

 

 

Pi

275.644617

Theta

210.18534

Tajima's D

0.937793

CLR

0.211143

CSRT

0.646167691615419

Interpretation

Uncertain