Silkworm Genome Informatics Database

Gene

KWMTBOMO02939

Pre Gene Modal

BGIBMGA003634

Annotation

E3_ubiquitin-protein_ligase_Topors_[Papilio_xuthus]

Location

Bomo_Chr5(-):14193806-14197505 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.704

CDS

ATGGCGACTATACCACAATCTTTGGATGATATCTCTGAAGCAAACCCAAGCAGCATAAAGAGTGATGATAGCAGTCCACATCATGACAACAGCAGAGGGTCGCCACCTCCTAACTGTGCAATATGTCTAGGAACATGTAAAAACAAATCATTCACTGATTCTTGCTTGCACCAATTTTGTTTCAACTGTCTTGTAACTTGGAGTAAGGTGAAAGCAGAATGTCCATTATGCAAGCAAAATTTTAAATCAATAATTTATAATGTTCGTGCCAATCAACAATATGAAGAATACCAAGTGGAACAGCGCCAAGTTGAATCTAGCCAGAGAATTGATATTGATACACTCACAAACAGAAGGTTTAGATACAGAACTACATTGACATTGCCACGACGGCAGTCGATAGCCTTCCAGCAGTTGTTGTTACGGCACTACCCACTTGTGGCAAATGTGTTGAGTCCACCACGTCGTCGACGCTCTCCGGCTTCCTTCCGTCGCACTGTGTACCGACACAACCTGTGGGCGCGACCACTCCCCGACTTCACTGGACGGTTTCGTGACTGTACGCCAGAATTCTATAGATCTAATGCCACACAGTTACATCGTCTCGTGCCCTGGTTGAATAGGGAGCTTAGCTACTTATTAAATGGAAACGTAGGTCATATTTCTTACGTGCTGACCAGAATCTTGGAAATGTTGCCTCACCATCACATAACTTTCGGGACCGAGTTTCGGGAAGCGATGACACGTTTCTTTGGTGACAGGACAGACCATTTCTTACACGAGTTGTACTGCTTCGCGTCAACACCCTACGACATGACCGGATATGATCGTAATGTGCAATACACGACTGATTCGCGTATGTCGACAATGGTCAACGAAGTGATATCTAGCTCGGAGTCAGATGGAAGTGTCGACTCGGATATCGTGATGGTGTCGAGTTCATCTGCCGCCGAACCTTCCGCCGGTCCCTCGGGAGTACCGCGAGCTCCGCCCCGGGCCGCCCTCGCAGCCAACAATATCATTCCCATTGAAACAATTTCACATTCTGACACTGACGACGACTCATCCGAAGTAATGGTCGTCGGCTATATTAAACCCCCTCAGGATCGAACTCCAGAACTCGTTGATCTGGTCGGATCTGATAGCGACGTAGTGATCGCCGAAACCACGCAACCTCAACCTGGACCGTCCGACACGAATGCCGGCCCTTTTGTGAAGCTTACTTTGAAAAGAGACCGTCCTGAAGGGTCGAATTGGTCTGGTTCGGACTCTGACGACTCGTACCGTCCGCTAAGGCGTCGTCGCCGGCGGCCGCGCTCCTCCGACTCCGCCACGACGGCAGACACGCGCCGCACCACGCCCGAACCTGCCTCCTCCACCTCCGCTTCGTCCGACGCCGATCAGTCGTCAACAGACACGTCACTATCTGACGACAGAAAAACCGGTGCCACCAGAAAGAAGATCAGAAAGAGAAGCAGCAGGGAAGGCGCAACATTTCGCCGGGAAAGAAATGGAAGTGGAAGACGTTCGTCGCCCGGTCAACGACGCGATAACAAAGTAAATACCGACTCGAGTCATCCGGATCGAGACCGACGAAGTAAAAAGAAGTCACATTCAGGAAAAGGAGTGAAATGTTCTAGACGTCTCGAGGAGCCTCCCCCAGAAGCTCGGCCGACGGAATCCGCGGGACGGAAGTTGAGGAGCGTCGTCACCGTCATGCGCGGCCGGACCGCCGGGCCCGACAGGAGGTCCAGCATCTCTGACTCAGACGACGACCTGCCTCTTAATCTCACTGTACAGAAAAAGCAACCTCCCTCCTAG

Protein

MATIPQSLDDISEANPSSIKSDDSSPHHDNSRGSPPPNCAICLGTCKNKSFTDSCLHQFCFNCLVTWSKVKAECPLCKQNFKSIIYNVRANQQYEEYQVEQRQVESSQRIDIDTLTNRRFRYRTTLTLPRRQSIAFQQLLLRHYPLVANVLSPPRRRRSPASFRRTVYRHNLWARPLPDFTGRFRDCTPEFYRSNATQLHRLVPWLNRELSYLLNGNVGHISYVLTRILEMLPHHHITFGTEFREAMTRFFGDRTDHFLHELYCFASTPYDMTGYDRNVQYTTDSRMSTMVNEVISSSESDGSVDSDIVMVSSSSAAEPSAGPSGVPRAPPRAALAANNIIPIETISHSDTDDDSSEVMVVGYIKPPQDRTPELVDLVGSDSDVVIAETTQPQPGPSDTNAGPFVKLTLKRDRPEGSNWSGSDSDDSYRPLRRRRRRPRSSDSATTADTRRTTPEPASSTSASSDADQSSTDTSLSDDRKTGATRKKIRKRSSREGATFRRERNGSGRRSSPGQRRDNKVNTDSSHPDRDRRSKKKSHSGKGVKCSRRLEEPPPEARPTESAGRKLRSVVTVMRGRTAGPDRRSSISDSDDDLPLNLTVQKKQPPS

Uniprot

A0A194PQ17 A0A2A4K3K9 A0A2A4K488

Pubmed

26354079

EMBL

KQ459597 KPI95058.1 NWSH01000167 PCG78845.1 PCG78846.1

Proteomes

UP000053268 UP000218220

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD
IPR017907   Znf_RING_CS

Gene 3D

3.30.40.10

ProteinModelPortal

A0A194PQ17 A0A2A4K3K9 A0A2A4K488

PDB

1CHC E-value=1.56962e-05, Score=118

KEGG

101739792 K10631 E3 ubiquitin-protein ligase Topors [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase Topor

GO

GO:0016874 GO:0005515 GO:0008270 GO:0046872 GO:0004672 GO:0006310 GO:0003909 GO:0051103 GO:0003677 GO:0006281 GO:0048384

Length:

606

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00423

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00059

outside

1 - 606

Pi

206.171878

Theta

190.87395

Tajima's D

0.047765

CLR

0.028208

CSRT

0.380680965951702

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree