Gene

KWMTBOMO02934  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003635

Annotation

PREDICTED:_transportin-1_[Bombyx_mori]

Location

Bomo_Chr5(-):14148382-14157695      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.972

CDS

ATGGAGTGGAAACCAGAACAAGAAGGATTACGGCAAATTTTAACACTACTCAAAGAGTCACAGTCACCCGACACAGCTACACAACGAGCAGTTCAACAAAAATTGGAAGAACTGAACAAATACCCGGACTTCAACAACTATCTGATATTCGTTTTAACTAGACTGGTAACTGAAGAAGAACCAACAAGGTCACTAAGTGGTTTGATATTGAAAAATAATGTCAAAGCTCATTACAACAGCTTTTTGCCTGAAGTAGCAGAATTTATAAAGCAGGAATGTTTATCTGCTGTGGGAGATCCATCCCCGTTAATTCGTGCAACAGTTGGTATTATCATCACAACTATTGCTAGCAAAGGAGAATTGACATCCTGGCCTGAACTACTACCGTCATTATGTCAAATGCTTGATTCACAGGACTATAATGTTTGTGAAGGAGCATTTGGAGCACTCCAAAAAATTTGTGAGGACACAGCAGAGTTACTGGACAGTGATGCTATGAACAGACCTTTGAATGTCTTAATACCAAAATTTCTGCAATTCTTTAGGCATACTTCTCCTAAAATCAGATGTCATGCTATTGGATGTGTAAACTATTTTATCATGGGCAGAACACAAGCACTAATGATGCACATAGATGCATTTATTGAGAATTTATTTCACTTAGCTGCTGATGAGGATCCAGATGTTAGAAAGAATGTTTGTCATGCACTTGTGCTGTTGTTGGAAGTTCGACTTGACAGACTCATTCCACATTTGCCCAATATTATAGAGTATATGTTGGTGAGAACACAAGATCCGAAAGAAGGAGTGGCTTTAGAAGCCTGTGAATTCTGGCTCGCGCTTGCCGAACAAAATGTTTGTCGAGAGGTACTTGGTCCTCGACTACCCGCCCTGCTGCCAGTGTTAGTTCGCGGCATGCGCTATTCAGAGATGGATGTTATCCTGCTACGTGGTGACCGGGATGATGATGCAGACGACGCAGAACCAGATCGCGAAACCGACATCAGACCCCGCTTTCATAAACCACGTTCCCATACCATCAAACATAATGGAGCAGGAGACAGCACAATGTCAGGTGGTGGAGATTCTGATACGGAGTCTGAGGGCGGTGGCGACCCTGATGATGGATCCGTTTCGGACTGGAACTTGCGCAAATGTAGCGCAGCCGCACTAGACGCTCTGGCCAACGTTTTTGGTGCTGACCTTCTGCCCGTGCTCTTCCCGATACTCAAGGAGACCTTATTCCATGACGATTGGGTCATCAAAGAGAGCGGTATTTTGGCATTGGGCGCTGTAGCGGACGGCTGCATGGGGGGCATGGTGCCGCACCTGCCGGACCTGGTGCCGTATCTGGTGTGCTGCCTGCCCGAGAGCAAGGCGCTCGTGCGTGCCATCACTTGTTGGACCCTCTCACGCTACTCGCACTGGATCGTATCGCAGTCGCACGATCTCTACCTCAGACCTGTCCTCACAGAGCTGTTGAAACGAGTACTCGACAACAATAAACGTGTCCAAGAGGCTGCTTGTTCTGCCTTCGCGACATTAGAGGAAGAAGCTTGCACAGAGCTAGTGCCATACCTCGGCTACATCCTGCAGACTCTCGTGTTCGCTTTCAGTAAATACCAACACAAGAACCTGCTCATATTGTACGACGCAATCGGAACTTTGGCAGACTCGGTTGGTCACCATCTCAACAAACCGGAATATATAAACCTCTTGATGCCACCTCTAATAAATAAATGGAATGTACTCAAGGATGAAGATAAAGACTTATTCCCGTTACTAGAGTGTTTATCATCCGTAGCTACAGCTCTACAGTCCGGTTTTTTGCCATACTGTGAACCTGTGTTCAGGAGATGTGTTTCCTTAATAGAACAGACATTAAATCAAAACATTGCAAACAGTCAAAGTCCTGAGCAGTTTGAAGCCCCGGACAAAGAATTCATGATTGTTGCACTGGACTTGTTGAGTGGCTTGGCTGAAGGATTAGATGGACATATCGAGCGACTGGTTCTAAATTCAAACTTAATGCAGCTACTTTATCAGTGTATGCAAGACCCTATGCCTGAGGTTCGTCAGTCTTCATTCGCGTTACTCGGTGATCTCACAAAAGCGTGTTTCCAACACGTCCTACCGTACATACCAGAATTTTTACCCATTCTCGGAGCAAATCTCAATCCTGAACTTATATCTGTGTGCAATAATGCTACCTGGGCTATAGGCGAAATTAGTATTAAACTAGGTCCAGAAACATCGAAGTATATTCCCTTAGTACTTAAACATTTAGTTGAAATCATCAATAGGCCTAACACACCAAAAACTCTCCTCGAAAACACAGCGATTACTATCGGTCGGCTAGGTTATGTGTGCCCCCACGACGTCGCACCCGTATTACATCAATTTGTACGCCAGTGGTGCACGTCGCTGCGGAACATCCGAGACAACGATGAGAAGGACTCTGCGTTCCGCGGCATCTGTCAGATGATCCAAGTGAATCCGGCGGGAGTGGTGCCCGACTTTCTGTTCTTCTGCGACGCCGTCGCCTCCTGGTCGCATCCCAAGGACGACCTCAAGGACATGTTCACGGAGATTCTGCACGGCTTCAAAAACCAGGTGGGCGACGAGAACTGGCGCCGCTTCACGGATCAGTTCCCCGTGCAGCTGAGCGCGCGGCTGTCGGCCATGTGCGGCATCTAG

Protein

MEWKPEQEGLRQILTLLKESQSPDTATQRAVQQKLEELNKYPDFNNYLIFVLTRLVTEEEPTRSLSGLILKNNVKAHYNSFLPEVAEFIKQECLSAVGDPSPLIRATVGIIITTIASKGELTSWPELLPSLCQMLDSQDYNVCEGAFGALQKICEDTAELLDSDAMNRPLNVLIPKFLQFFRHTSPKIRCHAIGCVNYFIMGRTQALMMHIDAFIENLFHLAADEDPDVRKNVCHALVLLLEVRLDRLIPHLPNIIEYMLVRTQDPKEGVALEACEFWLALAEQNVCREVLGPRLPALLPVLVRGMRYSEMDVILLRGDRDDDADDAEPDRETDIRPRFHKPRSHTIKHNGAGDSTMSGGGDSDTESEGGGDPDDGSVSDWNLRKCSAAALDALANVFGADLLPVLFPILKETLFHDDWVIKESGILALGAVADGCMGGMVPHLPDLVPYLVCCLPESKALVRAITCWTLSRYSHWIVSQSHDLYLRPVLTELLKRVLDNNKRVQEAACSAFATLEEEACTELVPYLGYILQTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYINLLMPPLINKWNVLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVFRRCVSLIEQTLNQNIANSQSPEQFEAPDKEFMIVALDLLSGLAEGLDGHIERLVLNSNLMQLLYQCMQDPMPEVRQSSFALLGDLTKACFQHVLPYIPEFLPILGANLNPELISVCNNATWAIGEISIKLGPETSKYIPLVLKHLVEIINRPNTPKTLLENTAITIGRLGYVCPHDVAPVLHQFVRQWCTSLRNIRDNDEKDSAFRGICQMIQVNPAGVVPDFLFFCDAVASWSHPKDDLKDMFTEILHGFKNQVGDENWRRFTDQFPVQLSARLSAMCGI

Uniprot

A0A2A4K5A3   A0A2H1V7Z6   A0A2W1BKY9   A0A212FF02   A0A0N1I940   A0A194PQN1   + More
A0A067QQE4   V9ICR3   A0A088A0C0   A0A0C9QRR4   A0A151J5Z1   A0A151WG57   A0A1B6EQY0   A0A195FTE6   A0A1B6J5Y9   F4WDJ5   A0A151I3F9   A0A151IQ27   E2BD03   A0A3L8DJG8   K7IUK9   A0A0T6B5N0   A0A1E1XPQ5   A0A2J7PJA5   A0A131XH30   T1I543   A0A131YHL9   L7M6W5   A0A224ZAQ6   A0A0L7R1Q2   V5I0B3   A0A2R5LBL4   A0A1Y1KTG9   A0A1Y1KUL6   A0A2R7W8X7   D6W880   A0A1S3JGP1   A0A154P2X4   A0A1S3JGK2   A0A146L8J4   A0A0P6IQP7   A0A1Q3EW72   B0VZC8   A0A224XJG7   Q171U6   A0A0V0G5Q9   U5EWX2   A0A023F5L8   A0A023F4R0   A0A0L8HH33   A0A336LJB3   A0A1J1J394   A0A0P5ATD8   A0A182ISW2   R7UAA4   A0A182FE43   A0A2M4AHQ8   W5JKG5   A0A084W2Q7   G1KJ76   A0A0F7YZ90   F6ZF74   A0A218VB22   K7G7M3   U3K6T0   T1DHT4   A0A0F7Z4L3   A0A182PPA7   K9IVE7   U6CXD6   A0A2Y9KP94   A0A2Y9KHS6   M3YSG9   A0A182XM97   Q7Q6E8   A0A182I232   L8J045   A0A2C9JVH1   A0A182V909   A0A182K3G0   D2HGU3   A0A341AD32   A0A2U4AWV8   A0A2Y9PW30   G7MU97   A0A1D5QQR3   A0A341ACY5   A0A2K6E793   A0A2K6K162   A0A2K5WC55   A0A2I2ZPQ4   G1QXD5   A0A2K5YCY1   A0A0D9RSW2   A0A340XD27   A0A2R9CNL4   A0A096MVQ5   A0A2Y9F2E4   A0A2K6Q291   A0A337S210  

Pubmed

28756777    22118469    26354079    24845553    21719571    20798317    + More
30249741    20075255    29209593    28049606    26830274    25576852    28797301    25765539    28004739    18362917    19820115    26823975    17510324    25474469    23254933    20920257    23761445    24438588    20431018    17381049    23758969    12364791    14747013    17210077    22751099    15562597    20010809    22002653    17431167    22398555    22722832    25362486    17975172   

EMBL

NWSH01000167    PCG78840.1    ODYU01001155    SOQ36970.1    KZ149992    PZC75558.1    + More
AGBW02008872    OWR52326.1    KQ460226    KPJ16460.1    KQ459597    KPI95054.1    KK853579    KDR06564.1    JR038426    AEY58251.1    GBYB01003322    JAG73089.1    KQ979945    KYN18576.1    KQ983189    KYQ46820.1    GECZ01029407    JAS40362.1    KQ981285    KYN43164.1    GECU01013135    JAS94571.1    GL888087    EGI67775.1    KQ976479    KYM83779.1    KQ976794    KYN08261.1    GL447495    EFN86428.1    QOIP01000007    RLU20501.1    AAZX01002632    LJIG01009681    KRT82593.1    GFAA01002156    JAU01279.1    NEVH01024950    PNF16408.1    GEFH01003193    JAP65388.1    ACPB03011717    ACPB03011718    ACPB03011719    GEDV01009818    JAP78739.1    GACK01005244    JAA59790.1    GFPF01012828    MAA23974.1    KQ414667    KOC64774.1    GANP01003895    JAB80573.1    GGLE01002732    MBY06858.1    GEZM01075915    GEZM01075914    JAV63878.1    GEZM01075913    GEZM01075912    JAV63880.1    KK854476    PTY16174.1    KQ971307    EFA10900.2    KQ434809    KZC06276.1    GDHC01013926    JAQ04703.1    GDIP01252260    GDIQ01001482    JAI71141.1    JAN93255.1    GFDL01015494    JAV19551.1    DS231813    EDS25719.1    GFTR01008267    JAW08159.1    CH477446    EAT40761.1    GECL01002698    JAP03426.1    GANO01001227    JAB58644.1    GBBI01002252    JAC16460.1    GBBI01002277    JAC16435.1    KQ418267    KOF88080.1    UFQT01000031    SSX18244.1    CVRI01000066    CRL05950.1    GDIP01198218    JAJ25184.1    AMQN01009780    KB306204    ELU00071.1    GGFK01006827    MBW40148.1    ADMH02001272    ETN63269.1    ATLV01019678    KE525277    KFB44501.1    GBEW01001119    JAI09246.1    AAMC01037553    AAMC01037554    AAMC01037555    AAMC01037556    AAMC01037557    MUZQ01000022    OWK62782.1    AGCU01094584    AGCU01094585    AGCU01094586    AGCU01094587    AGCU01094588    AGCU01094589    AGCU01094590    AGCU01094591    AGCU01094592    AGCU01094593    AGTO01010760    GAAZ01002708    JAA95235.1    GBEX01003688    JAI10872.1    GABZ01000658    JAA52867.1    HAAF01002452    CCP74278.1    AEYP01061565    AEYP01061566    AEYP01061567    AEYP01061568    AEYP01061569    AEYP01061570    AAAB01008960    EAA11789.4    APCN01000109    JH880501    ELR61014.1    GL192823    EFB13568.1    CM001258    EHH26566.1    JSUE03036197    AQIA01059209    AQIA01059210    CABD030104238    CABD030104239    ADFV01031373    ADFV01031374    ADFV01031375    ADFV01031376    ADFV01031377    ADFV01031378    AQIB01086713    AQIB01086714    AJFE02032503    AJFE02032504    AJFE02032505    AJFE02032506    AJFE02032507    AJFE02032508    AJFE02032509    AHZZ02029300    AHZZ02029301    AHZZ02029302    AANG04002524   

Proteomes

UP000218220    UP000007151    UP000053240    UP000053268    UP000027135    UP000005203    + More
UP000078492    UP000075809    UP000078541    UP000007755    UP000078540    UP000078542    UP000008237    UP000279307    UP000002358    UP000235965    UP000015103    UP000053825    UP000007266    UP000085678    UP000076502    UP000002320    UP000008820    UP000053454    UP000183832    UP000075880    UP000014760    UP000069272    UP000000673    UP000030765    UP000001646    UP000008143    UP000197619    UP000007267    UP000016665    UP000075885    UP000248482    UP000000715    UP000076407    UP000007062    UP000075840    UP000076420    UP000075903    UP000075881    UP000252040    UP000245320    UP000248483    UP000006718    UP000233120    UP000233180    UP000233100    UP000001519    UP000001073    UP000233140    UP000029965    UP000265300    UP000240080    UP000028761    UP000248484    UP000233200    UP000011712   

Pfam

PF03810   IBN_N        + More
PF02985   HEAT

Interpro

IPR001494   Importin-beta_N        + More
IPR016024   ARM-type_fold       
IPR000357   HEAT       
IPR011989   ARM-like       
IPR040122   Importin_beta       

SUPFAM

SSF48371   SSF48371       

Gene 3D

1.25.10.10    

ProteinModelPortal

A0A2A4K5A3   A0A2H1V7Z6   A0A2W1BKY9   A0A212FF02   A0A0N1I940   A0A194PQN1   + More
A0A067QQE4   V9ICR3   A0A088A0C0   A0A0C9QRR4   A0A151J5Z1   A0A151WG57   A0A1B6EQY0   A0A195FTE6   A0A1B6J5Y9   F4WDJ5   A0A151I3F9   A0A151IQ27   E2BD03   A0A3L8DJG8   K7IUK9   A0A0T6B5N0   A0A1E1XPQ5   A0A2J7PJA5   A0A131XH30   T1I543   A0A131YHL9   L7M6W5   A0A224ZAQ6   A0A0L7R1Q2   V5I0B3   A0A2R5LBL4   A0A1Y1KTG9   A0A1Y1KUL6   A0A2R7W8X7   D6W880   A0A1S3JGP1   A0A154P2X4   A0A1S3JGK2   A0A146L8J4   A0A0P6IQP7   A0A1Q3EW72   B0VZC8   A0A224XJG7   Q171U6   A0A0V0G5Q9   U5EWX2   A0A023F5L8   A0A023F4R0   A0A0L8HH33   A0A336LJB3   A0A1J1J394   A0A0P5ATD8   A0A182ISW2   R7UAA4   A0A182FE43   A0A2M4AHQ8   W5JKG5   A0A084W2Q7   G1KJ76   A0A0F7YZ90   F6ZF74   A0A218VB22   K7G7M3   U3K6T0   T1DHT4   A0A0F7Z4L3   A0A182PPA7   K9IVE7   U6CXD6   A0A2Y9KP94   A0A2Y9KHS6   M3YSG9   A0A182XM97   Q7Q6E8   A0A182I232   L8J045   A0A2C9JVH1   A0A182V909   A0A182K3G0   D2HGU3   A0A341AD32   A0A2U4AWV8   A0A2Y9PW30   G7MU97   A0A1D5QQR3   A0A341ACY5   A0A2K6E793   A0A2K6K162   A0A2K5WC55   A0A2I2ZPQ4   G1QXD5   A0A2K5YCY1   A0A0D9RSW2   A0A340XD27   A0A2R9CNL4   A0A096MVQ5   A0A2Y9F2E4   A0A2K6Q291   A0A337S210  

PDB

4FQ3     E-value=0,     Score=3364

KEGG

101745250    K18752 transportin-1 | (RefSeq) transportin-1

GO

GO:0005634   GO:0006606   GO:0008536   GO:0005623   GO:0005737   GO:0006607   GO:0031965   GO:0034399   GO:0006610   GO:0008139   GO:0007224   GO:0061053   GO:0005488   GO:0005515   GO:0006886   GO:0006310   GO:0003909   GO:0051103   GO:0003677   GO:0006281   GO:0048384  

PANTHER

PTHR10527  

Subcellular location

Nucleus  

Length:

898

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04567

Exp number, first 60 AAs:

0.00013

Total prob of N-in:

0.00115

outside

1  -  898

 

 

Pi

223.175888

Theta

187.91401

Tajima's D

0.526001

CLR

0.55241

CSRT

0.519074046297685

Interpretation

Uncertain