Silkworm Genome Informatics Database

Gene

KWMTBOMO02932

Pre Gene Modal

BGIBMGA003556

Annotation

PREDICTED:_DNA_ligase_4-like_[Bombyx_mori]

Location

Bomo_Chr5(+):14113746-14129315 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.707

CDS

ATGGAATTAGAAAAGGAGTTAACAAAAAAATTTTTATGTGGTGAAATGTCGTTTGCTGATTATTCTAATGAATGGTATTATAACGATGACGAAGACGGTGAAAATGTTGAGATCGATAAAGAATACGAATATGAAGAAGGACATCAGTCTACCACATCCAAAGATAAACATCAACAAAGAAGGCGGCGTTTCACTCATCTGCCTCCTGCACTCCTGGGTCTTATGGGCGAAGCTAACTTGCGCTTTGCTAGAGGAGATAAAGAAACTGCCGAGCAAATGTGTCACGAGATAATAAAACAAGTTCCAACAGCCTCAGAGCCATATCAGACTCTAGCTCAAATTTATGAATCTGATGCAGATAAAACACTACAATTCTCTTTATTAGCAGCTCATCTGAGTCGTTCAGATGCAAACGAGTGGCTTAGGCTTGCCACTATTTGCAGTCAGAGACAAGAAATTAGACAAGAAATGAGCTGTTACAACCAAGCGATTAAAGCAGATCCACAGAATTTAAGCATACATTTAAAAAGATTAGAACTTTTAACTGAAATTGAGGAACAAGGAAATATTCCAATTCATACTTTAAGTATTACCCGAGTGAAATGCTACCATAAAATAGTATCTTGTATGAAAGCAACTGATGGTGATACTATCATGAAATATGCTAGACTAGCTGCCAAAATATACCACAGTAATAATGAAATAGAGCGAATGCTACAGGTTTTTGGTATTGCATATAAAAAATGTTCATCACTTTTCACTTTAGAAGATGTTAATATATTTCTAGAAGCTCTAATTAGTCTTAAACAGTTTGAAACATGCTTAGAGATATTTGTGGCCGTTCTTGGTGTGGTGATAGAAGCTGAAATTAATACAATAAAGAATTCCAACGGAGTTGTTGAAGAACAAACTACCTACACTAAATGTCAAATACCAAATGATTTACCAATCGATTTAAAAACTAAATTACTTGTGTGTTTTATTCATTTAGGTGCTACTAATTTAGTAAAAATGTTACTAGATGATTTTCTTTCACATGATGTCGAAAAAGCTGGAGATCTGTACATGGACATTGAAGAAGCACTCTCTTCTGTTGGACATCATGAATTAGCTATGCAAGTTTTAGAACCATTGGTGAAGAACACTAGTTTTGATCTTGGAGCAGTGTGGCTCAAACATGCAGACTGTTTATACAATTTGGGCAGAGAAGATGATTCTATTCATTCTTATTATAAAGTATTAAAGCATGCACCGCAGCATCCCGATGCCCGCTGTAAATTGTATTCATTATTGGAAAAAAAAGGATGCATAGACGAAGCATTGGATATTTTGCAGCAAGATTATAAATATGTAGTTAGTGCTGCATTATTTTATGAACATTGTTGTGCCCTTAAAAGGCATGGTAGACTTTTAAAATACTTGGAGGTAGGAGAAGCTTTGCTATCGAAAAAGTTTGTGAGATTTAGGCATCCAGGGGAATTATCTATAGCTTGTAAGCTAAGAGGTGGAATTGATCTTGTCCATGAATTTCGGACACTAAGAGGGGAAAATCCTTATCATGAGATGGATTTGCATTTTGATGAGGATGAATCTTTTAAATTAACTCCACAACAAGAATGGGATTTATTTGTTGAATTGTTGAAAATAGCATTACAATTTAAAAAGTATACAACTATGATGAGACTGAGTTTTGGAGCGATGATGTCAAAGAGCTTAACACCATATCGCTTGGATATGGAGTTTTACTGTTTACAAGCTTGCATACTAAATAATGAACAACAGTATGCAATTAAATTTGCTAGAGAATTTACGCAAAAATATCCTGGTTCCCGTTCCTGGAATATGTTAAACTATGCTATAAATTCTGCAGAAGAAAGTATACCTACAAAATTTTTGTGGAGACTTTTTAACAAAGATTATAACATTGTGAAGAATTTATTTTTGGGCAATAACTTTTTGGCATCTGGTCGGTATCTGGTAGCTTTAAAATATTTTCTGGAATACCATGATCAGTGCAGAGAACCACTTTCTGCCTTGCTGATAGCTGTCTGTATATTAGCAATGGCAGTACAAAAGACTGTTGATAAGCATCATAATTTAGTGCTTCAAGGGATTTCATATTTGTTAAAATATAAAAGTCTTAGAAAATGTGACCAAGAAGTGTATTATAACTTGGGAAGAGCATATCAAATGCTAAGTATAAATCATTTAGCTATAGAATACTATGAGAGGGCACTTGCTTGTAAGGATGTTACCCAATGTGATCAACATGTTTCCATTACTTCAGTTGATTCTGTAAAATTTCTCGATTTATGTAAAATTCTTAAGCGAATGAGCGATACGAAGAAAAAAGCGGATCGCTGTAATGTGCTACTTCATTATTTGCACGATTTGAAATCGAAACTCCCAAAGACAACGGACGGAAAGAACACTACATTGTTCGCACTTCTGAGGTTACTTTTGCCAAAACTGGAAAGGGAGCGACCAGCGTACAATTTAAAAGAAAAATCCCTTGGTTCATTGCTGGTGCGAGTTTTGGCACTAAGTAAAAAGTCGCCGGTTGCAAAGCAGTTACTACATTTTAGATCTGTTAGCAATAGCCAGGAGAGCGACTTTGCGGGCGTCGTATATTTCATATTGAAATACAAAGTTGGCACAGACGCTGAAGAACTTACTATCGGTCAAATTAATGAAGCCCTTGATAAAATAGCTACACATGCAGAAAATAGAAGTGATATATTAGATCAGACATTTAGTTATATTCTCAGAAAATTGACCGCTGAACAACTGAAATGGTTCCTCAGGATAATACTCAAAGATATGCGGCTAGGTGTAAGCGACAATCACATTTTAAGTTGTTTCCATCCTGATGCCCCCGAAATCTACAAAATGACGAACAGTCTTAGTAAGGTATGTAAAGAGCTTGAAGAAGACGAAAGTCGCCCTACGGAGCTAGGGTTACAGCTAAATTACGCTGTAACTCCGATGTTATCCGAACGTCTAGACGTAACCGACGTGCAGCAATACTTGTCCCCCGACAAGACATATCATATAGAGAAAAAGTTTGACGGCGAAAGATTTCAGATGCACATGAAAGACGGTGTATTCAAATATTTTTCGAAAAAAGGTCATTCAGAGAGTTTCACAAAGACATACGGGGAAACCTACAAAGAAGGGTTGCTGACACCGTTTTTAAAAGATAGTTTTGGTAGTGACGTGAAGAATTTCGTTATAGACGGTGAAATGATGGGCTGGCACAAAGAATTACAGAGTTTCGGTAGCAAGAGCATGCCTTATAATATCAAAAAAATAACGGAAAATTCGAAAGTCAGGCCGTGTTTCTGCGCTTTTGATATCCTGTATTATAATGATAAATCTTTGGTGGGACCTCCGGAACACGGGGGCCTACCTCTTGACGAGCGCCTACCGTTGCTTGATAATCTATTCAAAGATATCAGAGGTGTAATACAACATAGCGCCAGACGAGCTGTTCATAAGAGTTCTGACGTACTGGACGCCCTGAACGAAGCCATGCAGAACGACGAGGAAGGCATCGTAGTGAAGGACACAAAATCATATTACATCTCGAGCCAACGCAAAGCCGGCTGGTACAAGATAAAACCAGAGTACACAGAGGGAGTTTTGGCAGATTTGGACTTAGTGATAATTGGTGCTGACGAAGCGGCGGATAAAACGCATGGACGCGCGAACAGTTTCGTGGTTGCTTGTGCGGAATTATCAAGTACCGGTCGTCCACAACGCTGGCTATCGGTGAGCCACGTGTCGAACGGTCTAACCCACGAGGAGCGAGCGGGACTGTGTGCGGAGCTTGAGTTGCACTGGAAGAGGACCGCCGACCATCCCCCACCGGAGCACCTGGTCTTCAATGAACGCAAACCAGACTTTTGGATCGAACCCGATCATTCGGTTGTGTTACAGATTCACGCCACGGAATTGGTTCGTACCCCGAAGTTCGGCACGCCGTACACGCTACAGTTCCCGCGCGTCGAACGCCTGCGTCACGACAAGCCGGTCAACGACGCCATGACTATTGACGAATTCAAAAAACTGATAAAGAATCACAGTCCCGTAATAAAGTTGGCTGTTAACGCAATCAGTGAAGATCAGCTAAACAAAACGTCAGCTAAATCACCCAGAAAACGGCAGAAGAAAGTTCTTCAAGTTGCCGAACAATTCAGAACTGGAATACAAGATAAAGTGGAAGTGATATCGAACGCTCTCGCCGGACGGAGAATATGCATTCTGTCAGACGAAGAAGACTGCAGCCGCACTGAGCTAATCAAAATCGTGGAGTCTCATGGAGGACAAGTGGTTGCTAACTACGACGAGTCGTGCTGGTGCTGCGTGTCGGGGCGCTGCACGAGCGCGGTGCGTGCGTGCGTGCGGGCGCGGCGCGTGGACGTGCTGCGCGCGGGCTGGCTGCGCGCCCTGCGCACCGCACCCGCGCCCCTGCCCCCGCCGCACCCGCTGCACGCGCTCGCGCTCTCCCCCGCCACGCGGCTGCACCACGCCGCGCGCTACGACATCCACGCCGACTCGTACACGGAACCCGCAGACAAAACCACCCTGATCATGTGCTTCGAGAAAATGGACAAAATGCCTCAAATCCATTTAATGCCCGACGAAATGCTAGAATTGGATAGAACATTATTCGGAGGACATACCCCACTCTCGTTCCTGCGGCCATGTGTTATTCATTTCGTTGCATTGAACGACTTAAATGTACTCCTCGCTAAAATGTATGGAGCATCCGTATGTGATGCGAATGAACCTAGTTTGACTCACGTCATTGTTCCGGAGTGCATCGCTTCTGAAACATTAAATGAAATGAAGAAAAAACATGTCGATACCATATCGTTTGTAGGTATGAGGTGGCTCGAGGAATGTTTTTCGCAAGCTAAAATTATCAACGAAAGAGACTATTTGTTTTAA

Protein

MELEKELTKKFLCGEMSFADYSNEWYYNDDEDGENVEIDKEYEYEEGHQSTTSKDKHQQRRRRFTHLPPALLGLMGEANLRFARGDKETAEQMCHEIIKQVPTASEPYQTLAQIYESDADKTLQFSLLAAHLSRSDANEWLRLATICSQRQEIRQEMSCYNQAIKADPQNLSIHLKRLELLTEIEEQGNIPIHTLSITRVKCYHKIVSCMKATDGDTIMKYARLAAKIYHSNNEIERMLQVFGIAYKKCSSLFTLEDVNIFLEALISLKQFETCLEIFVAVLGVVIEAEINTIKNSNGVVEEQTTYTKCQIPNDLPIDLKTKLLVCFIHLGATNLVKMLLDDFLSHDVEKAGDLYMDIEEALSSVGHHELAMQVLEPLVKNTSFDLGAVWLKHADCLYNLGREDDSIHSYYKVLKHAPQHPDARCKLYSLLEKKGCIDEALDILQQDYKYVVSAALFYEHCCALKRHGRLLKYLEVGEALLSKKFVRFRHPGELSIACKLRGGIDLVHEFRTLRGENPYHEMDLHFDEDESFKLTPQQEWDLFVELLKIALQFKKYTTMMRLSFGAMMSKSLTPYRLDMEFYCLQACILNNEQQYAIKFAREFTQKYPGSRSWNMLNYAINSAEESIPTKFLWRLFNKDYNIVKNLFLGNNFLASGRYLVALKYFLEYHDQCREPLSALLIAVCILAMAVQKTVDKHHNLVLQGISYLLKYKSLRKCDQEVYYNLGRAYQMLSINHLAIEYYERALACKDVTQCDQHVSITSVDSVKFLDLCKILKRMSDTKKKADRCNVLLHYLHDLKSKLPKTTDGKNTTLFALLRLLLPKLERERPAYNLKEKSLGSLLVRVLALSKKSPVAKQLLHFRSVSNSQESDFAGVVYFILKYKVGTDAEELTIGQINEALDKIATHAENRSDILDQTFSYILRKLTAEQLKWFLRIILKDMRLGVSDNHILSCFHPDAPEIYKMTNSLSKVCKELEEDESRPTELGLQLNYAVTPMLSERLDVTDVQQYLSPDKTYHIEKKFDGERFQMHMKDGVFKYFSKKGHSESFTKTYGETYKEGLLTPFLKDSFGSDVKNFVIDGEMMGWHKELQSFGSKSMPYNIKKITENSKVRPCFCAFDILYYNDKSLVGPPEHGGLPLDERLPLLDNLFKDIRGVIQHSARRAVHKSSDVLDALNEAMQNDEEGIVVKDTKSYYISSQRKAGWYKIKPEYTEGVLADLDLVIIGADEAADKTHGRANSFVVACAELSSTGRPQRWLSVSHVSNGLTHEERAGLCAELELHWKRTADHPPPEHLVFNERKPDFWIEPDHSVVLQIHATELVRTPKFGTPYTLQFPRVERLRHDKPVNDAMTIDEFKKLIKNHSPVIKLAVNAISEDQLNKTSAKSPRKRQKKVLQVAEQFRTGIQDKVEVISNALAGRRICILSDEEDCSRTELIKIVESHGGQVVANYDESCWCCVSGRCTSAVRACVRARRVDVLRAGWLRALRTAPAPLPPPHPLHALALSPATRLHHAARYDIHADSYTEPADKTTLIMCFEKMDKMPQIHLMPDEMLELDRTLFGGHTPLSFLRPCVIHFVALNDLNVLLAKMYGASVCDANEPSLTHVIVPECIASETLNEMKKKHVDTISFVGMRWLEECFSQAKIINERDYLF

Similarity

Belongs to the ATP-dependent DNA ligase family.

Uniprot

A0A212EPV6 A0A0L7L3G1 A0A151WMY1 A0A151I1N1 A0A2A3EC85 A0A232F8U6 + More

Pubmed

22118469 26227816 28648823

EMBL

AGBW02013358 OWR43532.1 JTDY01003162 KOB70038.1 KQ982920 KYQ49262.1 + More
KQ976554 KYM80800.1 KZ288305 PBC28786.1 NNAY01000636 OXU27264.1

Proteomes

UP000007151 UP000037510 UP000075809 UP000078540 UP000242457 UP000215335 + More

Pfam

PF01068   DNA_ligase_A_M        + More
PF04679   DNA_ligase_A_C
PF04675   DNA_ligase_A_N
PF11411   DNA_ligase_IV
PF13181   TPR_8
PF00533   BRCT
PF16589   BRCT_2

Interpro

IPR036599   DNA_ligase_N_sf        + More
IPR012309   DNA_ligase_ATP-dep_C
IPR012308   DNA_ligase_ATP-dep_N
IPR021536   DNA_ligase_IV_dom
IPR000977   DNA_ligase_ATP-dep
IPR029710   LIG4
IPR016059   DNA_ligase_ATP-dep_CS
IPR012340   NA-bd_OB-fold
IPR013026   TPR-contain_dom
IPR012310   DNA_ligase_ATP-dep_cent
IPR011990   TPR-like_helical_dom_sf
IPR001357   BRCT_dom
IPR036420   BRCT_dom_sf
IPR019734   TPR_repeat
IPR039340   Tfc4/TFIIIC-102/Sfc4

SUPFAM

SSF50249   SSF50249        + More
SSF48452   SSF48452
SSF52113   SSF52113

Gene 3D

1.10.3260.10 1.25.40.10 3.40.50.10190

CDD

cd00027 BRCT

ProteinModelPortal

A0A212EPV6 A0A0L7L3G1 A0A151WMY1 A0A151I1N1 A0A2A3EC85 A0A232F8U6 + More

PDB

6BKG E-value=9.78703e-99, Score=925

KEGG

101745535 K10777 DNA ligase 4 [EC:6.5.1.1] | (RefSeq) DNA ligase 4-like

PATHWAY

03450 Non-homologous end-joining - Bombyx mori (domestic silkworm)

GO

GO:0003677 GO:0071897 GO:0006310 GO:0051103 GO:0005524 GO:0003910 GO:0006281 GO:0001004 GO:0005515 GO:0003909 GO:0048384

PANTHER

PTHR45997:SF1 PTHR23082

Length:

1650

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10835

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00218

outside

1 - 1650

Pi

151.060559

Theta

157.891685

Tajima's D

-0.711471

CLR

3.610766

CSRT

0.191190440477976

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics