Gene

KWMTBOMO02929

Pre Gene Modal

BGIBMGA003554

Annotation

PREDICTED:_F-box/WD_repeat-containing_protein_9-like_[Amyelois_transitella]

Location

Bomo_Chr5(+):14074786-14080903      View in EpiBrowser

Full name

F-box/WD repeat-containing protein 9      

Alternative Name

F-box and WD-40 domain-containing protein 9

Location in the cell

Extracellular   Reliability : 1.94

CDS

ATGTGTGAGCTACTGCAATCAGTCAAAGAACAAATAACAGAGATAGAAAATGAAATTACTGCAAATAAATATCAACTAGATGAACCAAATTTAATTGACATGCCTGTTGAAATTTTCCTACAAATATGTTCATTTTTGGATGCATATTTTCTCAAAAATACACTCAGTAAGGTGTGTCTACGGTTTTGTGACATACTAGCCGACGATCAACTATGGAAGCATTGGGTACAGAATAAAATTAAGGGAAAATTTCCCCCAGTAGGTGATTTAAAAAAATGGAATGTTGATCCTGCAGACTGGCAGGATTTATATATTGCAATGGAAGTAGAAAAGAAAACTTGGTGTAATGTTGAAGAAACCATGAAACATATGGTTGTAAAAGATGTACATTTTGCATCAGTTGATGCTGTGTTGTTAGTGAATAATGGAGAATTGTGTATATCAGGAGGTAGGGATAGAGGAATGGCGTTGTGGAATGTTTCGGACATTAGTGCAAAAAGTGAAACAAATGACGGAGTAACATCACTAACGGACACCAAACCAAAACATTTAAGACATGATGCTCATGCAGGCTGGGTATGGGACTTGGCAGCAGATGTTGTGAACTCCGCTTCCAAAGTTTATTCTGCATCTTGGGATAATACTGTGAAAGCATGGGACTTAGCTACTGGATTTCAGTGTATCCAAACATTTCAATGTGGAATGGCCGCATTGTCCGTGGTAACAGTTGGAAGTGAAACTCTTGCTGGACTGTACTCAAAAAATATACTTTCTTTCGATTTACGTTCAGGCTCTGGTCCTATTTATGTTTACACACCGCACAAAGGCCCCGTTTTGGGTCTTGATGAGTACGACAACTTGATTGCTTCTATTAGTGAAGACAAAACACTCGCTGTTTGGGATAGACGCGCCGGAAAAATCTTAATGCAAGATATAAAAATACCCACTGGAAAAGCCTACCCGGTTTGTTTGAGTTGGGGACCTGCCGCTCTGTATATAGGCGATTCTAAAGGCGCCCTGCATTTATTTAATCCGGAAACCCTGAAGTTTGTGCATTCGGTTCTAGCATGGCCGCAAAACCAACCAAATAATACTTACTGTAAGGTAACAGCGTGTCACCAGAGCGAAAGCAACTTGATTCTTTGCTCGGACAAAGGAGAAATAAAGTTTATGTACAATTGCTATCCGCCTCAAGAATTTACAACAGTCACTAGCACTACATCTGAAGTTACACAGTTGCAGTATCTCAATGGAGTTTTAGTCATCGGAACCTGCGACTCCGCGTTAGAATTTTGGGTGCCGAAAGATAAATTTCCGTGA

Protein

MCELLQSVKEQITEIENEITANKYQLDEPNLIDMPVEIFLQICSFLDAYFLKNTLSKVCLRFCDILADDQLWKHWVQNKIKGKFPPVGDLKKWNVDPADWQDLYIAMEVEKKTWCNVEETMKHMVVKDVHFASVDAVLLVNNGELCISGGRDRGMALWNVSDISAKSETNDGVTSLTDTKPKHLRHDAHAGWVWDLAADVVNSASKVYSASWDNTVKAWDLATGFQCIQTFQCGMAALSVVTVGSETLAGLYSKNILSFDLRSGSGPIYVYTPHKGPVLGLDEYDNLIASISEDKTLAVWDRRAGKILMQDIKIPTGKAYPVCLSWGPAALYIGDSKGALHLFNPETLKFVHSVLAWPQNQPNNTYCKVTACHQSESNLILCSDKGEIKFMYNCYPPQEFTTVTSTTSEVTQLQYLNGVLVIGTCDSALEFWVPKDKFP

Description

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Subunit

Interacts with SKP1 and CUL1.

Keywords

Acetylation   Alternative splicing   Complete proteome   Phosphoprotein   Polymorphism   Reference proteome   Repeat   Ubl conjugation pathway   WD repeat  

Feature

chain  F-box/WD repeat-containing protein 9
splice variant  In isoform 2.
sequence variant  In dbSNP:rs6511833.

Uniprot

H9J217   A0A2A4K4A6   A0A2W1BUX1   A0A2H1VAX2   A0A194PV92   A0A0N1IFN6   + More
A0A212EPW5   A0A0L7LLE1   S4P6Z3   A0A067RIE1   A0A2P8XE10   A0A2J7PJ44   A0A2J7RLD6   E0VMG5   A0A195E3N6   E2BEL3   A0A195CSZ8   A0A195FS75   F4WAC5   A0A158NKX7   A0A151I266   A0A232EM20   K7IUK8   A0A087UM18   A0A088A0B9   A0A0J7L5Y0   E2AP67   A0A1B6EYB2   A0A2A3ERS3   A0A3L8DHZ0   A0A0M8ZMM2   A0A2L2YHS3   A0A2T7NNV9   H2NXP2   T1JGX8   A0A3Q0GNK9   R7V0Q9   V9KSG8   A0A2C9LZY9   A0A2K6R4P1   A0A2K6R4P4   A0A2K6LUA7   A0A0L7R1N3   A0A1S3JHD5   A0A2S2NHU9   A0A154P2W8   K7FSJ2   G1RQG8   K7DBL8   A0A2C9LZX2   A0A2R9A071   A0A2R9A0A3   A0A2K5ZCM9   V4ATB7   G1PL10   A0A151N672   A0A0D9R2Q4   A0A2K5MKT5   A0A2K6D9V8   A0A2K5VAD8   A0A0A0MVL1   F7BR67   Q5XUX1-3   A0A2K5QRY0   G3RN02   A0A1U7S2Y0   A0A2K6U1K0   A0A2Y9IAE5   A0A2U3Z3Y6   F7HCX0   G1M094   K1Q189   A0A2K5EGA7   R7TFU1   E2RSP5   A0A250YIF4   W4YBK3   A0A3P4KAG9   A0A2U3VUH7  

Pubmed

19121390    28756777    26354079    22118469    26227816    23622113    + More
24845553    29403074    20566863    20798317    21719571    21347285    28648823    20075255    30249741    26561354    23254933    24402279    15562597    25362486    17381049    16136131    22722832    21993624    22293439    17431167    15520277    14702039    15057824    15489334    18669648    19690332    22814378    23186163    24275569    22398555    25243066    20010809    22992520    16341006    28087693   

EMBL

BABH01007545    NWSH01000167    PCG78866.1    KZ149992    PZC75553.1    ODYU01001580    + More
SOQ38000.1    KQ459597    KPI95050.1    KQ460226    KPJ16456.1    AGBW02013358    OWR43533.1    JTDY01000639    KOB76378.1    GAIX01006646    JAA85914.1    KK852486    KDR22788.1    PYGN01002604    PSN30204.1    NEVH01024950    PNF16360.1    NEVH01002690    PNF41646.1    DS235307    EEB14571.1    KQ979701    KYN19681.1    GL447829    EFN85847.1    KQ977306    KYN03647.1    KQ981281    KYN43313.1    GL888048    EGI68808.1    ADTU01018997    KQ976551    KYM80853.1    NNAY01003461    OXU19368.1    AAZX01002632    KK120501    KFM78407.1    LBMM01000623    KMQ97958.1    GL441468    EFN64774.1    GECZ01026743    JAS43026.1    KZ288194    PBC33972.1    QOIP01000007    RLU20064.1    KQ436237    KOX67390.1    IAAA01023719    LAA06920.1    PZQS01000010    PVD22857.1    ABGA01116047    ABGA01116048    ABGA01116049    NDHI03003638    PNJ13506.1    JH432213    AMQN01021269    KB298370    ELU09271.1    JW869288    AFP01806.1    KQ414667    KOC64775.1    GGMR01003727    MBY16346.1    KQ434809    KZC06275.1    AGCU01011194    AGCU01011195    AGCU01011196    ADFV01089269    AACZ04030659    GABC01009630    GABD01002987    GABE01009004    NBAG03000278    JAA01708.1    JAA30113.1    JAA35735.1    PNI51234.1    AJFE02048602    AJFE02048603    AJFE02048604    KB200701    ESP00523.1    AAPE02050986    AKHW03003954    KYO32300.1    AQIB01141046    AQIB01141047    AQIA01034386    AQIA01034387    AHZZ02013596    JSUE03020827    AY736034    AK123037    AC018761    BC004290    CABD030111802    CABD030111803    CABD030111804    GAMT01007817    GAMS01010979    GAMR01009456    GAMQ01003910    GAMP01009011    JAB04044.1    JAB12157.1    JAB24476.1    JAB37941.1    JAB43744.1    ACTA01129942    JH816348    EKC30232.1    AMQN01013256    KB310073    ELT92604.1    AAEX03012407    GFFW01001383    JAV43405.1    AAGJ04058429    CYRY02000014    VCW48612.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000027135    UP000245037    UP000235965    UP000009046    UP000078492    UP000008237    UP000078542    UP000078541    UP000007755    UP000005205    UP000078540    UP000215335    UP000002358    UP000054359    UP000005203    UP000036403    UP000000311    UP000242457    UP000279307    UP000053105    UP000245119    UP000001595    UP000189705    UP000014760    UP000076420    UP000233200    UP000233180    UP000053825    UP000085678    UP000076502    UP000007267    UP000001073    UP000002277    UP000240080    UP000233140    UP000030746    UP000001074    UP000050525    UP000029965    UP000233060    UP000233120    UP000233100    UP000028761    UP000006718    UP000005640    UP000233040    UP000001519    UP000233220    UP000248481    UP000245341    UP000008225    UP000008912    UP000005408    UP000233020    UP000002254    UP000007110    UP000245340   

PRIDE

H9J217    Q5XUX1   

Pfam

PF00400   WD40        + More
PF12937   F-box-like
PF00646   F-box

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR001680   WD40_repeat       
IPR017986   WD40_repeat_dom       
IPR020472   G-protein_beta_WD-40_rep       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
IPR036047   F-box-like_dom_sf       
IPR001810   F-box_dom       

SUPFAM

SSF50978   SSF50978        + More
SSF81383   SSF81383       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J217   A0A2A4K4A6   A0A2W1BUX1   A0A2H1VAX2   A0A194PV92   A0A0N1IFN6   + More
A0A212EPW5   A0A0L7LLE1   S4P6Z3   A0A067RIE1   A0A2P8XE10   A0A2J7PJ44   A0A2J7RLD6   E0VMG5   A0A195E3N6   E2BEL3   A0A195CSZ8   A0A195FS75   F4WAC5   A0A158NKX7   A0A151I266   A0A232EM20   K7IUK8   A0A087UM18   A0A088A0B9   A0A0J7L5Y0   E2AP67   A0A1B6EYB2   A0A2A3ERS3   A0A3L8DHZ0   A0A0M8ZMM2   A0A2L2YHS3   A0A2T7NNV9   H2NXP2   T1JGX8   A0A3Q0GNK9   R7V0Q9   V9KSG8   A0A2C9LZY9   A0A2K6R4P1   A0A2K6R4P4   A0A2K6LUA7   A0A0L7R1N3   A0A1S3JHD5   A0A2S2NHU9   A0A154P2W8   K7FSJ2   G1RQG8   K7DBL8   A0A2C9LZX2   A0A2R9A071   A0A2R9A0A3   A0A2K5ZCM9   V4ATB7   G1PL10   A0A151N672   A0A0D9R2Q4   A0A2K5MKT5   A0A2K6D9V8   A0A2K5VAD8   A0A0A0MVL1   F7BR67   Q5XUX1-3   A0A2K5QRY0   G3RN02   A0A1U7S2Y0   A0A2K6U1K0   A0A2Y9IAE5   A0A2U3Z3Y6   F7HCX0   G1M094   K1Q189   A0A2K5EGA7   R7TFU1   E2RSP5   A0A250YIF4   W4YBK3   A0A3P4KAG9   A0A2U3VUH7  

PDB

5NUV     E-value=2.15393e-07,     Score=132

KEGG

101740243    K10265 F-box and WD-40 domain protein 9 | (RefSeq) F-box/WD repeat-containing protein 9-like

GO

GO:0070545   GO:0030687   GO:0000209   GO:0005829   GO:0043687   GO:0005515   GO:0006470   GO:0003993   GO:0004726   GO:0005737   GO:0007169   GO:0016020   GO:0004713   GO:0006281   GO:0048384  

Length:

439

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.06813

Exp number, first 60 AAs:

0.0083

Total prob of N-in:

0.00436

outside

1  -  439

 

 

Pi

185.481478

Theta

163.786063

Tajima's D

0.450942

CLR

1.309857

CSRT

0.499825008749563

Interpretation

Uncertain