Gene

KWMTBOMO02917  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003549

Annotation

mitochondrial_translational_release_factor_1_[Bombyx_mori]

Location

Bomo_Chr5(+):13873777-13876179      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.294 Mitochondrial   Reliability : 1.465 Nuclear   Reliability : 1.492

CDS

ATGTCGTTTCCGAAACTTCTCTTTCTTCGCTCGTTCTTGAATTCTGAAAGACAATTATTGCAATTTCGTAGACACTGCTCACATAATATCATGAACCTTTCGGACCCTGCTATTCAAACATATCTTAAGCATTTGATGGTAGAGCATGAAAACTTGCTAAGTAAAATGAAAAAATCCTCCGAAGAAGCTAGACGCTTACAGGAAATAAAACCAATCGTAAATGTCCTAGAACAAAGGATAGCTTTATATGATAGTATTGAATCACTTAAAGAATTAAATAAAAAAGAAGGTGACGATAGTGAGATAAAAAAGATGATAAAGGAAGAAGCGGCGATATATCTGAAACGTCTAAAGGAAATAGATGACGATTTACAGTTAATTCTTCTCGAACCACCATTAACTGAAGGTGGTGTACTCTTAGAACTAACTGCAGGAGCTGGAGGGCAAGAAGCGATGTTATTTGCAAAAGAACTCTTCAACATGTACCAGTCTTATGCTATCAACAAAGGTTGGGAAGTTGATATAGCATCATTTGACTTAACCGAAATAGGTGGAGTTCGTAAAGGATCAATGTTGATACAAGGTTTTGGTGTACCTGAACTGATGAGGATGGAGGCTGGAGTTCATCGTGTTCAAAGAATTCCTGCTACGGAGAAAGGTGGACGTATACATACTAGTACAGTCACTGTCGCTATTTTACCACAGCCCTCTGAAATAGAACTGAACATCCCTGAACGTGATGTAGTAATAGAGACAAAAAGAGCTAGTGGGGCTGGAGGTCAGCATGTAAACACAACCGATAGTGCTGTAAGGCTAATACATACACCGACGGGAACAACGGTTGAGTGTCAAGAAGGAAGATCACAAATAAAGAACAAACAAATTGCTATGCAGAAACTGAGAACACTTTTATTGGAGAAGCAGATACAAGAACAAGCTTTAAAACTGCAAAGTGAGAGGAAATCGCAGGTTGGGTCTGGCAACAGAAATGAAAAAATAAGAACATACAACTTCCCTCAAGATAGAGTGACAGAACATCGAGATGGTGGTGGGACATTCCATAATCTCAAAGGTTTTATGGAAGGTGGAGAGCAACTAGAACAGTTACAGGAGTCACTCCTTAAGAAAGAAAGACACAAGCTTTTACTGGAAGAAATTGAAAACATTCTGAATAAACACAGAGGAAAAACCATTGAAAGTTCCACCAGTCATTAA

Protein

MSFPKLLFLRSFLNSERQLLQFRRHCSHNIMNLSDPAIQTYLKHLMVEHENLLSKMKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKKMIKEEAAIYLKRLKEIDDDLQLILLEPPLTEGGVLLELTAGAGGQEAMLFAKELFNMYQSYAINKGWEVDIASFDLTEIGGVRKGSMLIQGFGVPELMRMEAGVHRVQRIPATEKGGRIHTSTVTVAILPQPSEIELNIPERDVVIETKRASGAGGQHVNTTDSAVRLIHTPTGTTVECQEGRSQIKNKQIAMQKLRTLLLEKQIQEQALKLQSERKSQVGSGNRNEKIRTYNFPQDRVTEHRDGGGTFHNLKGFMEGGEQLEQLQESLLKKERHKLLLEEIENILNKHRGKTIESSTSH

Uniprot

Q1HPR9   H9J212   A0A0L7L6E3   A0A2A4JW28   A0A194PNM7   A0A0N1PJH0   + More
A0A2H1VZ72   A0A212F2N3   A0A2W1BUV1   A0A2W1BKC6   A0A336LF00   A0A336N0N0   W5JEC4   A0A139WI12   A0A2M4BQ23   A0A2M4BPM3   A0A2J7PJ26   A0A139WHU5   A0A182FTW3   A0A2M4ALE6   A0A067QFM0   A0A182VAL3   Q7PZU0   A0A182WD14   A0A182HPJ2   A0A182THH1   A0A182MQU2   Q29KH7   A0A182JUN5   B4JCT3   A0A182YCB0   A0A3B0JZ81   A0A0L0BZ12   A0A1Q3F5W8   B0XII8   A0A1W4V7W5   B3MN37   A0A2P8YFP1   J3JXQ3   N6T309   U4UHQ1   A0A1Y1K8Y0   B3N385   A0A084WI94   Q16KB5   Q16L13   A0A0J9TMJ3   Q9VK20   A0A182P1D5   B4P2N5   A0A182G1Q2   A0A023ET49   A0A182XR80   B4M9A2   W8BSI3   A0A182KTC3   A0A1I8NB30   B4KHM1   A0A0M4E8N5   A0A0A1X0P6   A0A0P4VWY9   A0A182JG15   A0A182QLP3   A0A1I8P5D6   A0A1B6C7R2   A0A1W4WHC9   A0A034WSW3   B4MX15   A0A026WMA9   A0A1A9UV03   A0A2M3ZJG0   A0A2M3ZJE3   A0A0K8UJT2   A0A1B0ASY6   A0A1A9XYD2   A0A1B0GJ78   A0A1L8DRV8   A0A2A3ERX4   A0A0A9Y3A0   A0A1L8DRR7   A0A087ZZV4   A0A2R7WD06   A0A146LJL5   A0A3B3QDC6   A0A0C9R1C1   A0A0M8ZVE0  

Pubmed

19121390    26227816    26354079    22118469    28756777    20920257    + More
23761445    18362917    19820115    24845553    12364791    15632085    17994087    25244985    26108605    29403074    22516182    23537049    28004739    24438588    17510324    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    26483478    24945155    24495485    20966253    25315136    25830018    25348373    24508170    30249741    25401762    26823975    29240929   

EMBL

DQ443333    ABF51422.1    BABH01007566    JTDY01002668    KOB70975.1    NWSH01000568    + More
PCG75600.1    KQ459597    KPI95036.1    KQ460226    KPJ16442.1    ODYU01005348    SOQ46103.1    AGBW02010703    OWR48005.1    KZ149992    PZC75533.1    PZC75532.1    UFQS01004024    UFQT01004024    SSX16109.1    SSX35438.1    UFQS01004067    UFQT01004067    SSX16144.1    SSX35471.1    ADMH02001378    ETN62707.1    KQ971342    KYB27534.1    GGFJ01005880    MBW55021.1    GGFJ01005879    MBW55020.1    NEVH01024950    PNF16345.1    KYB27532.1    GGFK01008263    MBW41584.1    KK853579    KDR06565.1    AAAB01008986    EAA00433.4    APCN01003261    AXCM01003529    CH379061    EAL33198.1    CH916368    EDW03172.1    OUUW01000010    SPP85732.1    JRES01001125    KNC25292.1    GFDL01012098    JAV22947.1    DS233313    EDS29387.1    CH902620    EDV32015.1    PYGN01000632    PSN43069.1    BT128024    AEE62985.1    APGK01054225    KB741248    ENN71938.1    KB632305    ERL91863.1    GEZM01088917    GEZM01088916    GEZM01088913    JAV57834.1    CH954177    EDV58725.1    ATLV01023923    KE525347    KFB49938.1    CH477969    EAT34741.1    CH477928    EAT34990.1    CM002910    KMY90045.1    AE014134    AY061245    AAF53262.1    AAL28793.1    CM000157    EDW88265.1    JXUM01039007    KQ561187    KXJ79426.1    GAPW01001612    JAC11986.1    CH940654    EDW57778.1    GAMC01004463    JAC02093.1    CH933807    EDW12300.1    CP012523    ALC38401.1    GBXI01010079    JAD04213.1    GDRN01101499    JAI58359.1    AXCN02001102    GEDC01027751    JAS09547.1    GAKP01001692    JAC57260.1    CH963857    EDW76654.1    KK107152    QOIP01000007    EZA57150.1    RLU20009.1    GGFM01007902    MBW28653.1    GGFM01007878    MBW28629.1    GDHF01025513    JAI26801.1    JXJN01003038    AJWK01019500    GFDF01005019    JAV09065.1    KZ288194    PBC33966.1    GBHO01016980    GBRD01008056    JAG26624.1    JAG57765.1    GFDF01005020    JAV09064.1    KK854638    PTY17554.1    GDHC01011553    JAQ07076.1    GBYB01001755    JAG71522.1    KQ435863    KOX70319.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053268    UP000053240    UP000007151    + More
UP000000673    UP000007266    UP000235965    UP000069272    UP000027135    UP000075903    UP000007062    UP000075920    UP000075840    UP000075902    UP000075883    UP000001819    UP000075881    UP000001070    UP000076408    UP000268350    UP000037069    UP000002320    UP000192221    UP000007801    UP000245037    UP000019118    UP000030742    UP000008711    UP000030765    UP000008820    UP000000803    UP000075885    UP000002282    UP000069940    UP000249989    UP000076407    UP000008792    UP000075882    UP000095301    UP000009192    UP000092553    UP000075880    UP000075886    UP000095300    UP000192223    UP000007798    UP000053097    UP000279307    UP000078200    UP000092460    UP000092443    UP000092461    UP000242457    UP000005203    UP000261540    UP000053105   

PRIDE

Q1HPR9    H9J212    Q9VK20   

Pfam

PF03462   PCRF        + More
PF00472   RF-1

Interpro

IPR005139   PCRF        + More
IPR000352   Pep_chain_release_fac_I_II       

ProteinModelPortal

Q1HPR9   H9J212   A0A0L7L6E3   A0A2A4JW28   A0A194PNM7   A0A0N1PJH0   + More
A0A2H1VZ72   A0A212F2N3   A0A2W1BUV1   A0A2W1BKC6   A0A336LF00   A0A336N0N0   W5JEC4   A0A139WI12   A0A2M4BQ23   A0A2M4BPM3   A0A2J7PJ26   A0A139WHU5   A0A182FTW3   A0A2M4ALE6   A0A067QFM0   A0A182VAL3   Q7PZU0   A0A182WD14   A0A182HPJ2   A0A182THH1   A0A182MQU2   Q29KH7   A0A182JUN5   B4JCT3   A0A182YCB0   A0A3B0JZ81   A0A0L0BZ12   A0A1Q3F5W8   B0XII8   A0A1W4V7W5   B3MN37   A0A2P8YFP1   J3JXQ3   N6T309   U4UHQ1   A0A1Y1K8Y0   B3N385   A0A084WI94   Q16KB5   Q16L13   A0A0J9TMJ3   Q9VK20   A0A182P1D5   B4P2N5   A0A182G1Q2   A0A023ET49   A0A182XR80   B4M9A2   W8BSI3   A0A182KTC3   A0A1I8NB30   B4KHM1   A0A0M4E8N5   A0A0A1X0P6   A0A0P4VWY9   A0A182JG15   A0A182QLP3   A0A1I8P5D6   A0A1B6C7R2   A0A1W4WHC9   A0A034WSW3   B4MX15   A0A026WMA9   A0A1A9UV03   A0A2M3ZJG0   A0A2M3ZJE3   A0A0K8UJT2   A0A1B0ASY6   A0A1A9XYD2   A0A1B0GJ78   A0A1L8DRV8   A0A2A3ERX4   A0A0A9Y3A0   A0A1L8DRR7   A0A087ZZV4   A0A2R7WD06   A0A146LJL5   A0A3B3QDC6   A0A0C9R1C1   A0A0M8ZVE0  

PDB

4V7P     E-value=1.59206e-56,     Score=555

KEGG

732994    K02835 peptide chain release factor 1 | (RefSeq) mitochondrial translational release factor 1

GO

GO:0003747   GO:0070126   GO:0005739   GO:0043022   GO:0006415   GO:0016149   GO:0005737   GO:0004672   GO:0007169   GO:0016020   GO:0004713   GO:0006281   GO:0048384  

Length:

404

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00047

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00074

outside

1  -  404

 

 

Pi

257.149031

Theta

176.761288

Tajima's D

1.435176

CLR

0.514402

CSRT

0.769411529423529

Interpretation

Uncertain