SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02905
Pre Gene Modal
BGIBMGA003646
Annotation
PREDICTED:_uncharacterized_protein_LOC101747221_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr5(-):13559312-13583208      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.596
 

Sequence

CDS
ATGGTGAATGGCAACTACGTATTGTATGGGGATAAGCCGTCCTCGGAGTCGGAAATCGTGGATGACCACGTGCATAAACGCACCGTCGACAGAAAAACTAAGCGAAGATCGAGAACAGCTAATGAGCTCCAACGCTCCCTTAATGTGAGGCAACTAGACAATGAAACGGATTCCGTCAAATACGAAAAAAAGATAAACGAACCAAGACTTTTACGGTACGTTCCGACAACTGATGTAGAAGAAAATTATGTGACAGAAAAATTCGAAACCTATGATTTGAAGCCGACCGAAGAACGACCTAGAAAATACGCATTTACTAAGAAACCTAAGAACCCAACGGATGGCTCTATTAATTACGCGTATTCGAGGTCAAGCAGTAGTTGTAGTTCTCCAAACGGAAATTTACCGACCATATCGGAGCACGGAGAACAGTACGGGAATTATCGAGTCCATTCTTTTTCGGGTGCCGTGATTGATGATGTCGTCACCGGCTACGAGACGAAACTTGATAAATACTTCTCCAAGCCGCGGGAAGTCAAGACATTTGCTGCTAAGGGATCTCACCCAGACAGCCTGTACAGAGTTCCAGTTGACAGTGGAGTCGCACGTACTAAGATGACAAGAGTGGTACGAGTTATCCGATGGCCCGCTGCCCTTGTAGCCGTATGCGTCGCCTTAGCAGTCTTCGTGTACTTCCTTATGCCTGATACGATCGACATTGATGTAGACTCTGTTAATGGAACTACTTGGGAAGCTGCGAGAGCACACAATAATGTATTACCTCACAAATTTGAAGAGAGTAAAGTCAAGAAGAATGACAATGATCGTGCTCAAACACAGGACTTTTACGATGCTGATAATGACAAGAGTTACGATATTACCGCTATAATTGATACAATTACGGAAACGGATCCTAAAAGGGTGCTGCCGGTTGCACCAATATTCCCGAGTCATATCACTCCAGAGGTGCAATACGGGAATGAAAGGGTTGATAAAGATAAATTGAGAACGCCGAAAGTAATTAACGAAACGAACACATTTCACGAAGACTCAACACTCAAACCACATATCACTCAAAAACCTGAAAAACCCTTAGAAGTATACTTTAGGGACGTCACCGCAATCCCTACAACCACGGAATCTATCTTCAGAGCTGAAACGGTTAACGATTTTACGAATTACGAAGAGAAACAAACCACGAAAAAGATCGAAGAAGCGTCTTCGAAACATCGCCCATCACTTTACAAACAAAACTTCGTTCAACTTCCAAACGGAGTACAAGATGTCGAAGCGTCATCCGAGATACCTCTCGAAGTGCAAGAATACTACGGCGAGCAACCGGTGAAATCTAATGTTAACTTTACGTCTGGTCACTCGAAATTGTTCGGCATTTCTATGGAAGATGCGGAAAAAATTAAATCTACCACGCAAAGTTCAGTGTACAACACTAGGGTCTCACCCACGCTTCCGACTTGGCGGGATGGTGACGACGCTACTACCAAAAAATATCCAACTAACATTAATTACGAAGTGCCGCAGTGTCATTCGACCCACATACCTCTGTGCCGTGGAGTGCTGCCCTACGACTTAGCAGGAAACGCAGCTTCAGTCGGTGGAATAGAGATCACGGCCTTACTACCGCAGATAGAATACTTGGTGGCCACTAACTGCAGCGACCGTGTGAGGCACTTTGTCTGCGCTCTACTCGAACCTGAATGCAACCCGCCTCCGTATCCACCGAAATTGCCATGCTTTAATCTTTGCAAAGCTATCGTTGACAACTGTGACGGGCTGATCCCCCGAGACCTATCCCCGGCGTTCAATTGTCAGCAATATTTCAAGAACAACTGTATAGCAGCCAAGACGCCGTGCTACCCGAGAGAGATGACCTGCGGCGACGGATCCTGCATCCCGAGGGACTGGATCTGCGACGGGACCCGGGACTGCCTCAGCGGAGAAGACGAGGCGACTTGCGTCCAATGCGACACCCGCGAGTTCCGGTGTCCGTCCGGGGGATGTATACAGAAGCGTTGGCTCTGCGACGGGTACGCGGACTGCTCTAACGGGGAAGACGAGGACGTCGAGGTGTGCGGCAGCCCCGTGGTGGCGGGCGAGGAGCCGGCCGGGTCCGCGCCCGCACCCGCCGTGCGCAGACCGAACAGAATGCAGAATTCACACGGACGACAATACTCACACAATACAGGTGAGAATGAAAGCAGCAAAGAGCTCTTGGTCACAAGCGACAGCAGCAACTCCCTCAAACGGAATTTCACACGAAGACCCTCGCTGTCCCGACTGACGCCCTACAACCGAAATATGCCGCATACAATCCAAACCAGACATAACAATACACAAACAACCACAGCTCCCGTCACCAAACACTCCTCGCAAGACAACGAGAGAACAACACAGAACGCTGACGATGGAGATTCCGAGGAAGACGTGAATGTCGGAGACCTCGGATTCTTCGAAGACCTGAAGAAAGAACCTAAAGAACAGCCCGCTAAGCGGGTGATTGCGAAATCGCAGATGACCAAACCGAAGTCGTCTATAGAAAAAGACGCGGGAGGCGGCGCCCCGGCCCCCACGCGACTCGATCAGTCCATCAGCAAACTGGAGAGGGTTATCAATGGAGCGGCTCTACTAAAGAAAGCGGAAGCCGAATCGAAATCGGAAAAGGCGGAAGAGTTAGAAGAATCGCCTGAAATGAATAAGGGCGGGACGAGGAGTGACGATCTGCCGACCGGACCGCGGGGAGGGTCGACCAGCGCGCATGTGTCGCCCTGTCCCACCGGGGAGTTACGCTGCGTGGACGGGCGCTGCATCACGCTGGCCCAACTCTGCGACGGCACCATCGACTGCTCCGACCACGCAGACGAAGACAACTGCTTCACGTGA
Protein
MVNGNYVLYGDKPSSESEIVDDHVHKRTVDRKTKRRSRTANELQRSLNVRQLDNETDSVKYEKKINEPRLLRYVPTTDVEENYVTEKFETYDLKPTEERPRKYAFTKKPKNPTDGSINYAYSRSSSSCSSPNGNLPTISEHGEQYGNYRVHSFSGAVIDDVVTGYETKLDKYFSKPREVKTFAAKGSHPDSLYRVPVDSGVARTKMTRVVRVIRWPAALVAVCVALAVFVYFLMPDTIDIDVDSVNGTTWEAARAHNNVLPHKFEESKVKKNDNDRAQTQDFYDADNDKSYDITAIIDTITETDPKRVLPVAPIFPSHITPEVQYGNERVDKDKLRTPKVINETNTFHEDSTLKPHITQKPEKPLEVYFRDVTAIPTTTESIFRAETVNDFTNYEEKQTTKKIEEASSKHRPSLYKQNFVQLPNGVQDVEASSEIPLEVQEYYGEQPVKSNVNFTSGHSKLFGISMEDAEKIKSTTQSSVYNTRVSPTLPTWRDGDDATTKKYPTNINYEVPQCHSTHIPLCRGVLPYDLAGNAASVGGIEITALLPQIEYLVATNCSDRVRHFVCALLEPECNPPPYPPKLPCFNLCKAIVDNCDGLIPRDLSPAFNCQQYFKNNCIAAKTPCYPREMTCGDGSCIPRDWICDGTRDCLSGEDEATCVQCDTREFRCPSGGCIQKRWLCDGYADCSNGEDEDVEVCGSPVVAGEEPAGSAPAPAVRRPNRMQNSHGRQYSHNTGENESSKELLVTSDSSNSLKRNFTRRPSLSRLTPYNRNMPHTIQTRHNNTQTTTAPVTKHSSQDNERTTQNADDGDSEEDVNVGDLGFFEDLKKEPKEQPAKRVIAKSQMTKPKSSIEKDAGGGAPAPTRLDQSISKLERVINGAALLKKAEAESKSEKAEELEESPEMNKGGTRSDDLPTGPRGGSTSAHVSPCPTGELRCVDGRCITLAQLCDGTIDCSDHADEDNCFT

Summary

Uniprot
H9J2A9   A0A2W1BT21   A0A2A4K0K1   A0A0L7LDM0   A0A212ELM0   A0A0N1III6   + More
A0A194PV57   A0A2H1W8T0  
Pubmed
19121390    28756777    26227816    22118469    26354079   
EMBL
BABH01007589    BABH01007590    KZ149960    PZC76357.1    NWSH01000285    PCG77767.1    + More
JTDY01001535    KOB73623.1    AGBW02014037    OWR42361.1    KQ460226    KPJ16423.1    KQ459597    KPI95015.1    ODYU01006758    SOQ48894.1   
Proteomes
UP000005204    UP000218220    UP000037510    UP000007151    UP000053240    UP000053268    + More
PRIDE
H9J2A9   
Pfam
PF01392   Fz        + More
PF00057   Ldl_recept_a
Interpro
IPR036055   LDL_receptor-like_sf        + More
IPR002172   LDrepeatLR_classA_rpt       
IPR020067   Frizzled_dom       
IPR036790   Frizzled_dom_sf       
IPR023415   LDLR_class-A_CS       
IPR040093   LRAD1       
SUPFAM
SSF63501   SSF63501        + More
SSF57424   SSF57424       
Gene 3D
1.10.2000.10     4.10.400.10    
CDD
cd00112  LDLa
ProteinModelPortal
H9J2A9   A0A2W1BT21   A0A2A4K0K1   A0A0L7LDM0   A0A212ELM0   A0A0N1III6   + More
A0A194PV57   A0A2H1W8T0  
PDB
1N7D     E-value=1.17486e-13,     Score=190

Ontologies

KEGG
101747221    no KO assigned | (RefSeq) uncharacterized LOC101747221
GO
GO:0016021   GO:0030229   GO:0005515   GO:0004713   GO:0006468   GO:0005524   GO:0004672   GO:0007169   GO:0016020   GO:0006281   GO:0048384  
PANTHER
PTHR22722:SF5  

Topology

Length:
965
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.32216
Exp number, first 60 AAs:
0
Total prob of N-in:
0.99675
inside
1  -  211
TMhelix
212  -  234
outside
235  -  965
 
 

Population Genetic Test Statistics

Pi
223.705733
Theta
171.137039
Tajima's D
0.955039
CLR
0.339843
CSRT
0.651617419129044
Interpretation
Uncertain
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