Silkworm Genome Informatics Database

Gene

KWMTBOMO02903

Pre Gene Modal

BGIBMGA003543

Annotation

Leucine-rich_repeat-containing_protein_70_[Papilio_machaon]

Location

Bomo_Chr5(+):13524259-13534016 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.964

CDS

ATGTCCGATTCCGAGGTAGAAAACTCTGAGAGTGTCGGTGTTTCAAGACCAACATTGGCACAAGTGCGAGCAGTAGTGGAATTTATGCAGAAACATCCAGATTTAGCTCATAAAAAATTAAGAGTGGGAATGGGACGTGGTAAATTTAAGAAAATCTGGATGGAGCTTGCAAAAACTGCTAATTCTGTTGGTGGAGCAGTCAAATCAAGCCAAGGATGGATTAAATATTGGGCAGACAAAAGAAGAAGTGTGATGATAAAAAAAAAACAAATCGAAGAAGGTAAACTAAGAGGACGCATTACAATAATGGAACAAAAAATATTAGACTTGTGTAACGAAAAGTCATTATCACCAAAAAAGAGAGGTAAAGTGAAAGAAGAGCCCTGCAATGGAGGCGATGGAGATTCCTTGGATGGTTTTTTGTCGAAAGATGAGGAATACGGTGATATAGAACACAAACATTCTGTTACAGAAAACGATGAGAGACATTTGAATATAATTGATAAATTGGTAGAAGTTATGAACCAGCAGGCAGCAGCAATGAACCAGTTAGCGCACACATCCCTTTGTAATTCTAAAGCGCTTGAACGAGTCGCTGAGGCTTCCCACATTCAAGCATTGGCTGTGGACAGATTAGCGAATACATTTGAAACGATCAGCGCGTCCGTGCAAGATGTTAGGAACGCGGTCATCGGAATAGACTACACGGTCAAGAGATTATCCAAAGCTGTTCAAGTGTACAGCTTGAAGCACAATGTTATCAGCGAACTAGACAATTTTTGTTTTAAGGAATCCGGCTACACGGCCTTGAAACTTTTGGATATATCGTATAATTTGATATTCTGGATAGGATTACATGCCTTTTCAGGGCTTGAAAAGTTAATCTACTTAAATCTTAGTAACAACAGACTGAGATATATACCGTCCGATCTTTTCTGGGACACACCGCAGCTTGAACACCTTGACCTTTCTTCGAACGTTTTCGAGTCGCTAAAGAATGAGCCGTTCATAATGCACACAAAATTGCAGATATTAAATCTAAATAACTGTAGAATCAGATCATTACCAGACAGATTGTTTACGAGATTGCCTAATTTAAAGAAACTGGATATTAGTGAAAATTACGTGGTTATTTTAAGTGAAAACGTCTTAAAGCCTCTAAATAAACTAGAGCGATTAGAAATGTGGAGCGGGTATTGGCAGTGTTCTCCAGATTTCATTGCCATCGAGACATGGATCAAATCAAAGGGCATCAATTATCAGAACCAGTGTACGAAGGGACCTAAAAGGTCAGAAAAGATTATATCAACTGTGAGTCTTGAAAAAGCGCCAGTCGATTTGAGCACAGTGTGGAATACGACAGTAAATAAAAACGAGACTACAAAAGTAACGGAATCGAAACGCCCTTTGACGCCCCTGGAAAAGTTCGATAGGGAATTCTCTGCGATTCAAGCTCTCGTTATGGGCCTAGAAATGGGTTTAGCTATCGGCATAGTCGGAACGTATGTCTGGCTGCGACGATTCTTTTCTTGTGCTCGTTTTAGCTGTCGAGCGAACGTGAGGCGTCGAACTCGCAGACTGCAGCGTTCCGATGCTGAAATGAGAGCGAATTTACTTTGGAGTACCATCATCAATCCTGATGTGGAAACTCCACCGACGGCCCCTAATAGAAGACCACCTGGTGGCGTCTCTAATACGACCGATGGAGCCCGACACGCTGACGCCATCCGTGTCCCAAACAGATCCGAGACTCCACCACCACCATACAATGAATGCTGCATCAATATATAA

Protein

MSDSEVENSESVGVSRPTLAQVRAVVEFMQKHPDLAHKKLRVGMGRGKFKKIWMELAKTANSVGGAVKSSQGWIKYWADKRRSVMIKKKQIEEGKLRGRITIMEQKILDLCNEKSLSPKKRGKVKEEPCNGGDGDSLDGFLSKDEEYGDIEHKHSVTENDERHLNIIDKLVEVMNQQAAAMNQLAHTSLCNSKALERVAEASHIQALAVDRLANTFETISASVQDVRNAVIGIDYTVKRLSKAVQVYSLKHNVISELDNFCFKESGYTALKLLDISYNLIFWIGLHAFSGLEKLIYLNLSNNRLRYIPSDLFWDTPQLEHLDLSSNVFESLKNEPFIMHTKLQILNLNNCRIRSLPDRLFTRLPNLKKLDISENYVVILSENVLKPLNKLERLEMWSGYWQCSPDFIAIETWIKSKGINYQNQCTKGPKRSEKIISTVSLEKAPVDLSTVWNTTVNKNETTKVTESKRPLTPLEKFDREFSAIQALVMGLEMGLAIGIVGTYVWLRRFFSCARFSCRANVRRRTRRLQRSDAEMRANLLWSTIINPDVETPPTAPNRRPPGGVSNTTDGARHADAIRVPNRSETPPPPYNECCINI

Uniprot

A0A2H1V019

EMBL

ODYU01000061 SOQ34190.1

Pfam

PF13873 Myb_DNA-bind_5 + More
PF13855 LRR_8

Interpro

IPR028002   Myb_DNA-bind_5        + More
IPR001611   Leu-rich_rpt
IPR003591   Leu-rich_rpt_typical-subtyp
IPR032675   LRR_dom_sf

Gene 3D

3.80.10.10

ProteinModelPortal

A0A2H1V019

PDB

6BXC E-value=3.65049e-16, Score=209

KEGG

101742461 no KO assigned | (RefSeq) leucine-rich repeat-containing protein 70

GO

GO:0016021 GO:0005515 GO:0003724 GO:0006401 GO:0003676 GO:0005524 GO:0007169 GO:0016020 GO:0004713 GO:0006281 GO:0048384

Length:

596

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.94084

Exp number, first 60 AAs:

0.00057

Total prob of N-in:

0.00820

outside

1 - 482

TMhelix

483 - 505

inside

506 - 596

Pi

295.984371

Theta

207.969715

Tajima's D

1.486371

CLR

0.071055

CSRT

0.776611169441528

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics