Gene

KWMTBOMO02896

Pre Gene Modal

BGIBMGA003650

Annotation

PREDICTED:_voltage-dependent_calcium_channel_subunit_alpha-2/delta-3_[Bombyx_mori]

Location

Bomo_Chr5(-):13320140-13334178      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.405

CDS

ATGGATTCCGATGAAAACTCCAGAGTCAACCTAACATCGCTACTTCTTGATCTGAGACACGATATGATCGAGCAGCGTGAAGGAGAAACCGAAATAGGTGTTAAAGTCCAATATGACAACATGAGGCGCGTGGCCACTAGGCGCCAGCGATACTTCTATAGCCCAGTCGACGGCACGCCTTTCTCTCTAGCCGCCGTGCTCCCTGACGGATACGGCATGTATGAGCTACAAGCTGAACAGGAAGTCAAACATAGCCCTATCAACGTAACGGAATATTTCAAAGGCGAAAACTGGAAGATTCATCCAGATTGGGTGTACTGCGAATACGCATCAACGTCAGACCAGACTTTCAACACGCCTGAAGAGCAGTTGCTGCATTTCTTGATCCGCGCCGGGAAACCTGGCTGGAAGTGGATGTCGTTGCGACCGAGAGCCCTGACGCTGCACAACGCGCACAAGAAACAGGATCGCGATTCTTATTACTGTGATAAAACTTTAGTTCAGTCGCTTATCAGGGATGCAATGGTAATTAAAGAATTGGACGCTCACACAGGACATGCCAATCACCACTCCCAACAAGGTCGGTTCCACAAGTTCGTGGTGACGTTGTCCTTTATCGCGACACGGAGCGGCCTACTGAAGTGGACTGAGAACTTCAATGGATCTCGGAATTCCGATTCTGCTGAACAGCATTTCAGCGAAAAGTACTCTCGTGCATTCGATTCAGAATGGTACCGTCGAGCCGTAGAGCATCACGCCATAGAGCCCGAGAGTTTCGTTTTCTCCGTTCCTTTCCGCGACGGATCCGAGGCCGAAGATCTGAGTGGAAGGCCTCCATTGGTGCTCGCCACTCACGCGGTGTTCGTCGAGTCGAGAGGTCACAGGGCGCCGGCGGCTGTCGTCGGTCTACACTTCCAACTTGACTCTCTCGCGAAACACTTTCTAAACGTAACATCAACGTGCACTGCTGGTACTGTTTGCAAGAAGACTTGTGCTGGTGACGAACTCGACTGTTATATTTTGGACGACAACGGATTTATCATTCTATCTGAAGACGTATCGCAGACAGGACTGTTCTTCGGCCAAGTCGACGGAACAATCATGGATTCACTAGTCCAAGATCGGATTTACAAGAAGGTCACTGTTCACGACCATCAAGGAAGGTGTCCCGATTCTAGAAATCCATTCAGCGGGAATTCTAATAAACTATCGCCTTTAAAACCACTTTCTTGGCTCGGTGGCTATCTAACTAATTTGTTGGCTATTTGGTTCCCGATGTGGACTCATGCAAGCGCTCATACGGCTCCTTATAACGAGGAAGAATTAGATTACGAGGACTACGAAGGCGAAGATGTCGACCACGATGATGATACCGATCGCGATCGAGGAACATACGAGATCATCTTGGACGGAGGAGGAGAGGGTCCGCGTGGGGGACCGGCCGGCGCTCCTCCCCCACCGCCTCCCGCCCCCTCACCGCGGGAACCCTCCCGTGAAGCGGTGCGTTCTGCAGCCGTGCGACCGTGCGATACTAGCGCTGAACTCTTCACGTTACAGTCGACCAGACTCAGCGCTGCGCAGCCTTTGAAAGGGAAACTTACTAATTGCCATAATTCTGGATGCGAAAGACCGTTCAGCGTCCAGAAGATCCCGCACAGCAACCTGATACTGTTGGTGGTGGACACGCTGTGCCCGTGCGGCGCCAAGCGGCTGGACGTACGCGCACGCGAGTCAGCCCCGCGCCCCACGTGCTCCTCCCCCCCGCCGCGCCCCCACCGCCGCCGACCTCATACTTGCGTCTCCTACCATCCTGAGGTCAGATTTTAG

Protein

MDSDENSRVNLTSLLLDLRHDMIEQREGETEIGVKVQYDNMRRVATRRQRYFYSPVDGTPFSLAAVLPDGYGMYELQAEQEVKHSPINVTEYFKGENWKIHPDWVYCEYASTSDQTFNTPEEQLLHFLIRAGKPGWKWMSLRPRALTLHNAHKKQDRDSYYCDKTLVQSLIRDAMVIKELDAHTGHANHHSQQGRFHKFVVTLSFIATRSGLLKWTENFNGSRNSDSAEQHFSEKYSRAFDSEWYRRAVEHHAIEPESFVFSVPFRDGSEAEDLSGRPPLVLATHAVFVESRGHRAPAAVVGLHFQLDSLAKHFLNVTSTCTAGTVCKKTCAGDELDCYILDDNGFIILSEDVSQTGLFFGQVDGTIMDSLVQDRIYKKVTVHDHQGRCPDSRNPFSGNSNKLSPLKPLSWLGGYLTNLLAIWFPMWTHASAHTAPYNEEELDYEDYEGEDVDHDDDTDRDRGTYEIILDGGGEGPRGGPAGAPPPPPPAPSPREPSREAVRSAAVRPCDTSAELFTLQSTRLSAAQPLKGKLTNCHNSGCERPFSVQKIPHSNLILLVVDTLCPCGAKRLDVRARESAPRPTCSSPPPRPHRRRPHTCVSYHPEVRF

Uniprot

A0A2H1V9U9   A0A212ELK1   A0A2A4J1S3   A0A194PNL7   A0A0N0PDD7   H9J2B3   + More
A0A0L7LD67   A0A182WHI9   A0A182MB94   A0A1W4WNW6   A0A1W4WYM4   A0A182UFE1   A0A182RRI1   A0A182P3C8   A0A182JM09   A0A182NUX2   A0A182V6B5   A0A182Q9P3   A0A1S4H1I7   A0A182L5Z2   A0A182ICM5   A0A1I8PM32   A0A182Y5L4   A0A182K756   A0A1A9Y575   A7LBJ7   B4JQ69   W8BVD8   A0A0Q9VZ03   A0A1I8PLZ9   A0A1I8NBR2   B4KKY4   A0A3L8D6Z3   B4N016   A0A182F1L7   B3ML95   A0A1B0BLF9   A0A0L0CMN0   A0A3B0JNG7   A0A1B0FKN7   W8AW12   Q29KE9   A0A1W4V2R8   A0A2H8TFU7   B4HBY5   A0A0P8XE51   A0A232FGE5   W5JQN6   A0A182GZ58   A0A1W4VGC6   A0A0R3NUP1   B3N605   A0A0J9TNV7   A8DZ06   Q16WY0   B4NY93   A0A1B0CA97   A0A0Q5WA44   J9K4F6   A0A0J9R2T0   X2J9Z3   A0A0R1DN47   A0A1A9X488   A0A1J1IL18   Q7PM11   B4Q6G9   B4HXS2   A0A0M4E690   U4UP84   N6T239   A0A1B0D6Z4   A0A0P5KXR2  

Pubmed

22118469    26354079    19121390    26227816    12364791    20966253    + More
25244985    17994087    24495485    25315136    30249741    26108605    15632085    28648823    20920257    23761445    26483478    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17510324    17550304    23537049   

EMBL

ODYU01001433    SOQ37609.1    AGBW02014037    OWR42366.1    NWSH01003681    PCG65941.1    + More
KQ459597    KPI95026.1    KQ460226    KPJ16431.1    BABH01007608    BABH01007609    BABH01007610    BABH01007611    JTDY01001694    KOB73141.1    AXCM01001522    AXCN02000750    AAAB01008980    APCN01005734    EF990671    ABS30732.1    CH916372    EDV99049.1    GAMC01013476    JAB93079.1    CH940654    KRF77992.1    CH933807    EDW11714.2    QOIP01000012    RLU16039.1    CH963920    EDW77951.2    CH902620    EDV30684.2    JXJN01016335    JRES01000175    KNC33608.1    OUUW01000006    SPP82423.1    CCAG010005032    GAMC01013475    JAB93080.1    CH379061    EAL33226.3    GFXV01001115    MBW12920.1    CH479272    EDW39996.1    KPU72989.1    NNAY01000284    OXU29499.1    ADMH02000615    ETN65618.1    JXUM01098836    JXUM01098837    JXUM01098838    KQ564450    KXJ72255.1    KRT04823.1    CH954177    EDV58043.2    CM002910    KMY90395.1    AE014134    ABV53683.3    ABV53684.2    AGB93001.2    AGB93002.2    AHN54477.1    AHN54478.1    CH477551    EAT39108.2    CM000157    EDW89729.2    AJWK01003448    AJWK01003449    AJWK01003450    AJWK01003451    AJWK01003452    AJWK01003453    KQS70228.1    ABLF02036139    ABLF02036143    ABLF02036144    ABLF02036153    KMY90396.1    AAF53476.4    AHN54476.1    KRJ98676.1    CVRI01000054    CRL00856.1    EAA14534.4    CM000361    EDX05151.1    CH480818    EDW51852.1    CP012523    ALC39821.1    KB632384    ERL94313.1    APGK01047174    APGK01047175    KB741077    ENN74179.1    AJVK01003831    AJVK01003832    AJVK01003833    GDIQ01203591    JAK48134.1   

Proteomes

UP000007151    UP000218220    UP000053268    UP000053240    UP000005204    UP000037510    + More
UP000075920    UP000075883    UP000192223    UP000075902    UP000075900    UP000075885    UP000075880    UP000075884    UP000075903    UP000075886    UP000075882    UP000075840    UP000095300    UP000076408    UP000075881    UP000092443    UP000001070    UP000008792    UP000095301    UP000009192    UP000279307    UP000007798    UP000069272    UP000007801    UP000092460    UP000037069    UP000268350    UP000092444    UP000001819    UP000192221    UP000008744    UP000215335    UP000000673    UP000069940    UP000249989    UP000008711    UP000000803    UP000008820    UP000002282    UP000092461    UP000007819    UP000091820    UP000183832    UP000007062    UP000000304    UP000001292    UP000092553    UP000030742    UP000019118    UP000092462   

PRIDE

H9J2B3    X2J9Z3   

Pfam

PF02743   dCache_1        + More
PF08473   VGCC_alpha2
PF13768   VWA_3
PF08399   VWA_N
PF00092   VWA
PF00271   Helicase_C
PF00270   DEAD
PF13234   rRNA_proc-arch
PF08148   DSHCT

Interpro

IPR033479   dCache_1        + More
IPR013680   VDCC_a2/dsu       
IPR013608   VWA_N       
IPR036465   vWFA_dom_sf       
IPR002035   VWF_A       
IPR012961   Ski2_C       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR027417   P-loop_NTPase       
IPR025696   rRNA_proc-arch_dom       

SUPFAM

SSF53300   SSF53300        + More
SSF52540   SSF52540       

Gene 3D

3.40.50.410    

CDD

cd00079  HELICc

ProteinModelPortal

A0A2H1V9U9   A0A212ELK1   A0A2A4J1S3   A0A194PNL7   A0A0N0PDD7   H9J2B3   + More
A0A0L7LD67   A0A182WHI9   A0A182MB94   A0A1W4WNW6   A0A1W4WYM4   A0A182UFE1   A0A182RRI1   A0A182P3C8   A0A182JM09   A0A182NUX2   A0A182V6B5   A0A182Q9P3   A0A1S4H1I7   A0A182L5Z2   A0A182ICM5   A0A1I8PM32   A0A182Y5L4   A0A182K756   A0A1A9Y575   A7LBJ7   B4JQ69   W8BVD8   A0A0Q9VZ03   A0A1I8PLZ9   A0A1I8NBR2   B4KKY4   A0A3L8D6Z3   B4N016   A0A182F1L7   B3ML95   A0A1B0BLF9   A0A0L0CMN0   A0A3B0JNG7   A0A1B0FKN7   W8AW12   Q29KE9   A0A1W4V2R8   A0A2H8TFU7   B4HBY5   A0A0P8XE51   A0A232FGE5   W5JQN6   A0A182GZ58   A0A1W4VGC6   A0A0R3NUP1   B3N605   A0A0J9TNV7   A8DZ06   Q16WY0   B4NY93   A0A1B0CA97   A0A0Q5WA44   J9K4F6   A0A0J9R2T0   X2J9Z3   A0A0R1DN47   A0A1A9X488   A0A1J1IL18   Q7PM11   B4Q6G9   B4HXS2   A0A0M4E690   U4UP84   N6T239   A0A1B0D6Z4   A0A0P5KXR2  

PDB

5GJW     E-value=3.77054e-18,     Score=226

KEGG

101735565    no KO assigned | (RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-3

GO

GO:0016021   GO:0003676   GO:0005524  

Length:

608

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.82137

Exp number, first 60 AAs:

0.79018

Total prob of N-in:

0.08318

outside

1  -  608

 

 

Pi

173.233676

Theta

161.664375

Tajima's D

0.622201

CLR

0.191025

CSRT

0.542922853857307

Interpretation

Uncertain