Gene

KWMTBOMO02895  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003539

Annotation

PREDICTED:_superkiller_viralicidic_activity_2-like_2_[Amyelois_transitella]

Location

Bomo_Chr5(+):13299169-13312630      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.353 Nuclear   Reliability : 1.779

CDS

ATGTCTGACATAAATAGTTTGTTTGACTGTTTTGATGAAACACCAATAACTGAAGCTGCGATTCAGCTGCCAAATGTTAAAAATGTTGAAAAACCAAACTTGGAAGAGTTGACTGCTGCTGGAAATAAGCGTGCACATGATGACATCCAGTACGCTGATACCTCTGTATCAAAAAAGCCTCGCGAAGAAGAGGAAGACTCTGAATTGATTACCGACATAAATGTTGATCTGCTCCAATCTCGTATAGTGATACACACGCTAGAAACTCACGAGGGCTGTACACATGAAGTGGCAATACCACCTAATCAGGAATATGCTCCTCTTTTACCACTGACAACTGAACCTGTAAAGCAGTACAGTTTCATATTGGATCCGTTTCAAAAAGAAGCAATATTGTGTATAGATAATTTACAATCTGTACTTGTATCAGCTCACACGTCTGCTGGCAAAACAGTGGTTGCTGAGTATGCCATAGCTCTATCACTAAAAAACAAGCAGAGAGTAATATACACAACCCCTATTAAAGCTCTTTCGAATCAAAAATATAGAGAGTTCTCAGAGGAGTTTCATGATGTTGGTTTAATAACTGGTGATGTAACTATCAATCCCTCTGCTTCATGTCTTATCATGACAACTGAGATTCTCAGGAACATGTTGTATAGAGGTTCAGAAATTATGAGAGAAGTTGGTTGGGTTGTGTTTGATGAGATTCATTACATGAGAGATAAGGAGAGAGGTGTCGTTTGGGAAGAAACACTCATCCTTCTGCCGGACAATGTGCATTATGTATTTTTGTCTGCAACTATACCTAATGCACGTCAGTTTGCCGAGTGGGTCTGTCGCTTGCATTCCCAGCCTTGTCACGTCATTTATACAGAATACAGACCCACTCCACTGCAACACTACATTTTCCCAGCCGGTGGTGATGGAATACATTTGGTTGTTGATGAAAAGGGTATATTCAAGGAAGATAACTTCAACACAGCAATGACAGTGCTGAACAATGCAGGTGAAGCAGCAAAAGGCGACCAACGTGGTAGACGCGGCGGACCCCGGGATAAAAATCAGACCAATATTTTTAACATTGTCAAAATGATTATGGAAAGAAATTTCGCTCCCGTGATCATATTCAGCTTCAGTAAAAAGGATTGCGAACTATATGCCCTACAGATGGCGAAACTGGACTTCAACACAATTGAAGAAAAAAAACTAGTGGACGAAGTGTTTAGCAACGCAATGGATGTTTTAAGTGAAGAGGATCGGAAATTACCACAAGTAGAGAACGTTATACCTTTGTTGAGGCGCGGCATTGGCATACATCATGGAGGTCTACTGCCTATACTGAAGGAAACTATTGAAATATTATTCGGCTTAGGACTCATCAAGGCTTTATTTGCTACTGAAACATTTGCTATGGGATTGAACATGCCTGCGAGAACGGTAGTGTTTACCAACTGTCAAAAGTTTGACGGGAAGGAAGTTAGATTTATATCGTCAGGTGAATATATTCAGATGTCTGGTCGCGCTGGTCGGAGAGGTCTCGACGACAAGGGTATCGTTATATTGATGATCGACGAGAAGGTTACGCCCACTGTTGTCAAAGGCATGGTGCAAGGGAAAGCTGACCCTATTAATTCTGCATTCCATCTCACTTATAATATGGTTCTTAATCTACTGCGTGTAGAGGAAATCAATCCGGAATATATGCTGGAAAGAAGTTTCTTCCAGTTTCAGAATCAAGCAGCCATACCGGATCTGATAGACAAGGTCAAAGCAAAACAGAAACAATACGACGCCCTGTCCGTTAACGAGGAGAACTCCGTAGCTTCATACTCCACCATCAGAACTCAGCTAGATTTGCTCGGGGACCAGTTTCGGTCGTTCATAACTAAGCCGGAGTACTTGAAGCCTTTTTTGCAACCGGGAAGACTTGTCAAGGTGAAAACAGAGAAATACGAATACGACTGGGGCATCATAGTGAACTTCAGACATAAATCGAACAAAGGCAAGAAAGGACAAGAAGAGAATCCTTTGACGGCCGAGCCCGCCATTATTGTCGACATCCTACTGCACGTGAAGACGGCGACCGGCGGCGACGGCGAGACCAACGTGCCGTGTCCGCCCGGCGAGTCTGGCGACGTACAAGTGGTTCCAGTCGTACACACACTAATATACCAGATCAGTTCTCTTCGGGTGTACTATCCTAAGGACTTGAGGCCTTCGGACAATCGGAAATCTGTATTGAAGACTATAGGCGAGGTGAAAAAGAGGTTCCCCGATGGTCCCCCGCTGTTGAATCCCATTAATGATATGAAAATTAATGACTCAGTGTTTAAACAATGCGTCGATAGAATCAAGTTATTGGAAGAAAGACTATACTCACATCCGATCCATACAGACAAAAACAGAAGCGCCCTGACAGCTGCTTACGACAAGAAACAAGAGTTATATGAAGAGCTACAGAACGCTAAAGCGGAACTGAAGAAGGCGAAGAGCATACTGCAGATGGACGAGCTGAAGAAGAGAAAACGGGTGCTGAGGCGGCTCGGCTACTGCACCGCCGCCGACGTCATCGAGATGAAGGGACGCATCGCCTGCGAGCTCAGCAGTGCGGACGAACTGCTGCTAACGGAGTTGATATTCAACGGGGTGTTCAACGCGCTGTCTCCGGAGCAGAGCGCGGCGTTGATCAGCTGCTTCGTTTGCGACGAGAACTCCACGCAGGCCAGCGTCTCCGGCGAGGAGCTGCGCGGCGTGCTCAGGCAACTACAGGAATATGCCCGACGAATAGCAAAGGTATCGATCGATTCTAAAATGGATTTGGATGAAGATACTTACGTTAGTAAATTTAAATGTACACTCATGGACGTGGTCCTGTCATGGGCCAAAGGAGCTTCGTTCTTGCAGATATGCAAGATGACTGATGTTTTTGAAGGTTCAATAATAAGATGTATGAGACGTTTGGAGGAGGTGTTGCGACAGCTGTGCCAGGCTGCCAAGAACATTGGCAACACCGACTTGGAGAATAAATTCAGTGACGCGATCAAAATGCTCAAGAGGGACATTGTGTTCGCAGCCAGTCTTTATATGTAG

Protein

MSDINSLFDCFDETPITEAAIQLPNVKNVEKPNLEELTAAGNKRAHDDIQYADTSVSKKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVIYTEYRPTPLQHYIFPAGGDGIHLVVDEKGIFKEDNFNTAMTVLNNAGEAAKGDQRGRRGGPRDKNQTNIFNIVKMIMERNFAPVIIFSFSKKDCELYALQMAKLDFNTIEEKKLVDEVFSNAMDVLSEEDRKLPQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTVVFTNCQKFDGKEVRFISSGEYIQMSGRAGRRGLDDKGIVILMIDEKVTPTVVKGMVQGKADPINSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKVKAKQKQYDALSVNEENSVASYSTIRTQLDLLGDQFRSFITKPEYLKPFLQPGRLVKVKTEKYEYDWGIIVNFRHKSNKGKKGQEENPLTAEPAIIVDILLHVKTATGGDGETNVPCPPGESGDVQVVPVVHTLIYQISSLRVYYPKDLRPSDNRKSVLKTIGEVKKRFPDGPPLLNPINDMKINDSVFKQCVDRIKLLEERLYSHPIHTDKNRSALTAAYDKKQELYEELQNAKAELKKAKSILQMDELKKRKRVLRRLGYCTAADVIEMKGRIACELSSADELLLTELIFNGVFNALSPEQSAALISCFVCDENSTQASVSGEELRGVLRQLQEYARRIAKVSIDSKMDLDEDTYVSKFKCTLMDVVLSWAKGASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLKRDIVFAASLYM

Uniprot

H9J202   A0A2W1BN47   A0A2A4J3B7   A0A2H1V9T2   A0A212ELK2   A0A194PNZ0   + More
A0A1I8N7V6   A0A0L0CMS8   A0A1I8QAL3   A0A1B0CQR7   A0A034WKH8   A0A067RFY0   A0A0K8V7F2   A0A1L8DH68   A0A2J7R3N2   A0A0A1WP95   A0A1B0GC66   A0A1B0D6Z2   A0A182WHI7   A0A2A3E9U1   A0A182XCH6   A0A088ABX4   A0A182P3C4   A0A182RRI3   A0A182MCP3   A0A182L607   A0A182TK46   A0A182ICM7   A0A0L7RBT7   Q7Q1W4   A0A182UPE4   A0A1A9ZTH1   B4HXS8   B4Q6H5   Q9Y134   A0A1B0AKL5   A0A182QLM9   A0A182KE08   B4NY87   B3N611   A0A1Q3F0K6   A0A182Y5L2   A0A1A9UIT1   A0A182NUX0   A0A084VGN1   Q16WX8   A0A0N1ITA8   A0A1W4VGD1   B3ML21   B0WF10   A0A182GIM3   B4KKI2   A0A182JH29   B4N020   W5JV89   A0A232F190   A0A0M5J3K6   K7J836   B4M917   Q29KE6   A0A1A9X490   A0A3L8DY30   A0A0C9RWN9   A0A158P1V4   A0A195AVY4   A0A3B0K8P6   A0A158P1V5   B4JPC7   A0A182F1L5   A0A158P1V6   A0A195DMW0   A0A195EQ70   A0A336LNC0   A0A151K253   A0A154PGA9   A0A1B6MD42   A0A1B6CRT5   A0A2P8ZHA9   D6WE72   A0A1B6EZH0   A0A0T6AYE4   A0A1Y1N5P1   E2BF76   A0A1A9X493   A0A1S2ZGB9   I3MG60   G1SLV3   A0A1S3W604   A6H714   G5C6W9   L8J4X2   A5PJZ8   A0A2K6TKT6   A0A1S3I5P2   H0VFF2   G3VQ03   A0A2K5CPD9   A0A2K5PFR3   F7DVK9   U3EEP6  

Pubmed

19121390    28756777    22118469    26354079    25315136    26108605    + More
25348373    24845553    25830018    20966253    12364791    14747013    17210077    17994087    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    17550304    25244985    24438588    17510324    26483478    20920257    23761445    28648823    20075255    15632085    30249741    21347285    29403074    18362917    19820115    28004739    20798317    21993624    19393038    21993625    22751099    26383154    21709235    25243066   

EMBL

BABH01007611    BABH01007612    KZ149960    PZC76368.1    NWSH01003681    PCG65940.1    + More
ODYU01001433    SOQ37610.1    AGBW02014037    OWR42365.1    KQ459597    KPI95027.1    JRES01000175    KNC33586.1    AJWK01023928    AJWK01023929    AJWK01023930    GAKP01004694    JAC54258.1    KK852486    KDR22781.1    GDHF01017455    JAI34859.1    GFDF01008349    JAV05735.1    NEVH01007819    PNF35425.1    GBXI01013786    JAD00506.1    CCAG010007818    AJVK01003819    AJVK01003820    AJVK01003821    AJVK01003822    KZ288338    PBC27821.1    AXCM01009817    APCN01005735    KQ414617    KOC68319.1    AAAB01008980    EAA14456.4    CH480818    EDW51858.1    CM000361    CM002910    EDX05157.1    KMY90403.1    AF145638    AE014134    AAD38613.1    AAF53481.1    JXJN01026161    AXCN02000750    CM000157    EDW89723.1    CH954177    EDV58049.1    GFDL01013952    JAV21093.1    ATLV01013020    KE524835    KFB37125.1    CH477551    EAT39110.1    KQ435851    KOX70782.1    CH902620    EDV30679.1    DS231913    EDS25918.1    JXUM01066890    JXUM01066891    KQ562421    KXJ75949.1    CH933807    EDW11632.1    CH963920    EDW77955.1    ADMH02000014    ETN68086.1    NNAY01001369    OXU24217.1    CP012523    ALC38631.1    CH940654    EDW57693.1    CH379061    EAL33229.2    QOIP01000002    RLU25370.1    GBYB01013458    GBYB01013460    JAG83225.1    JAG83227.1    ADTU01006890    KQ976731    KYM76341.1    OUUW01000006    SPP82429.1    CH916372    EDV98757.1    KQ980724    KYN14167.1    KQ982021    KYN30430.1    UFQS01000017    UFQT01000017    SSW97481.1    SSX17867.1    LKEX01012869    KYN50205.1    KQ434899    KZC10916.1    GEBQ01006173    JAT33804.1    GEDC01021039    GEDC01008515    JAS16259.1    JAS28783.1    PYGN01000057    PSN55883.1    KQ971324    EFA01232.2    GECZ01026736    JAS43033.1    LJIG01022571    KRT79869.1    GEZM01012035    JAV93252.1    GL447952    EFN85662.1    AGTP01014251    AGTP01014252    AAGW02030815    AAGW02030816    AAGW02030817    AAGW02030818    AAGW02030819    BC146077    AAI46078.1    JH173584    GEBF01003319    EHB17280.1    JAO00314.1    JH880333    ELR62502.1    BC142299    AAI42300.1    AAKN02031486    AAKN02031487    AAKN02031488    AAKN02031489    AEFK01049826    AEFK01049827    AEFK01049828    AEFK01049829    AEFK01049830    GAMT01002386    GAMT01002385    GAMT01002384    GAMS01003993    GAMS01003992    GAMS01003991    GAMR01001653    GAMR01001652    GAMR01001651    GAMQ01001122    GAMQ01001121    GAMQ01001120    GAMP01005912    GAMP01005911    GAMP01005910    JAB09475.1    JAB19143.1    JAB32279.1    JAB40729.1    JAB46843.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000095301    UP000037069    + More
UP000095300    UP000092461    UP000027135    UP000235965    UP000092444    UP000092462    UP000075920    UP000242457    UP000076407    UP000005203    UP000075885    UP000075900    UP000075883    UP000075882    UP000075902    UP000075840    UP000053825    UP000007062    UP000075903    UP000092445    UP000001292    UP000000304    UP000000803    UP000092460    UP000075886    UP000075881    UP000002282    UP000008711    UP000076408    UP000078200    UP000075884    UP000030765    UP000008820    UP000053105    UP000192221    UP000007801    UP000002320    UP000069940    UP000249989    UP000009192    UP000075880    UP000007798    UP000000673    UP000215335    UP000092553    UP000002358    UP000008792    UP000001819    UP000091820    UP000279307    UP000005205    UP000078540    UP000268350    UP000001070    UP000069272    UP000078492    UP000078541    UP000078542    UP000076502    UP000245037    UP000007266    UP000008237    UP000079721    UP000005215    UP000001811    UP000009136    UP000006813    UP000233220    UP000085678    UP000005447    UP000007648    UP000233020    UP000233040    UP000008225   

PRIDE

H9J202   

Pfam

PF00270   DEAD        + More
PF13234   rRNA_proc-arch
PF08148   DSHCT
PF00271   Helicase_C
PF09782   NDUF_B6

Interpro

IPR011545   DEAD/DEAH_box_helicase_dom        + More
IPR012961   Ski2_C       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR025696   rRNA_proc-arch_dom       
IPR027417   P-loop_NTPase       
IPR016438   Ski2-like       
IPR019174   NADH_DH_b-subcmplx_su6       

SUPFAM

SSF52540   SSF52540       

CDD

cd00079  HELICc

ProteinModelPortal

H9J202   A0A2W1BN47   A0A2A4J3B7   A0A2H1V9T2   A0A212ELK2   A0A194PNZ0   + More
A0A1I8N7V6   A0A0L0CMS8   A0A1I8QAL3   A0A1B0CQR7   A0A034WKH8   A0A067RFY0   A0A0K8V7F2   A0A1L8DH68   A0A2J7R3N2   A0A0A1WP95   A0A1B0GC66   A0A1B0D6Z2   A0A182WHI7   A0A2A3E9U1   A0A182XCH6   A0A088ABX4   A0A182P3C4   A0A182RRI3   A0A182MCP3   A0A182L607   A0A182TK46   A0A182ICM7   A0A0L7RBT7   Q7Q1W4   A0A182UPE4   A0A1A9ZTH1   B4HXS8   B4Q6H5   Q9Y134   A0A1B0AKL5   A0A182QLM9   A0A182KE08   B4NY87   B3N611   A0A1Q3F0K6   A0A182Y5L2   A0A1A9UIT1   A0A182NUX0   A0A084VGN1   Q16WX8   A0A0N1ITA8   A0A1W4VGD1   B3ML21   B0WF10   A0A182GIM3   B4KKI2   A0A182JH29   B4N020   W5JV89   A0A232F190   A0A0M5J3K6   K7J836   B4M917   Q29KE6   A0A1A9X490   A0A3L8DY30   A0A0C9RWN9   A0A158P1V4   A0A195AVY4   A0A3B0K8P6   A0A158P1V5   B4JPC7   A0A182F1L5   A0A158P1V6   A0A195DMW0   A0A195EQ70   A0A336LNC0   A0A151K253   A0A154PGA9   A0A1B6MD42   A0A1B6CRT5   A0A2P8ZHA9   D6WE72   A0A1B6EZH0   A0A0T6AYE4   A0A1Y1N5P1   E2BF76   A0A1A9X493   A0A1S2ZGB9   I3MG60   G1SLV3   A0A1S3W604   A6H714   G5C6W9   L8J4X2   A5PJZ8   A0A2K6TKT6   A0A1S3I5P2   H0VFF2   G3VQ03   A0A2K5CPD9   A0A2K5PFR3   F7DVK9   U3EEP6  

PDB

6D6R     E-value=0,     Score=3308

KEGG

101743187    K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13] | (RefSeq) superkiller viralicidic activity 2-l

PATHWAY

03018    RNA degradation - Bombyx mori (domestic silkworm)

GO

GO:0006401   GO:0003724   GO:0003723   GO:0005524   GO:0016021   GO:0004004   GO:0005634   GO:0000460   GO:0051607   GO:0000398   GO:0071013   GO:0006120   GO:0005747   GO:0031499   GO:0000176   GO:0003676   GO:0007169   GO:0016020   GO:0004713   GO:0006281   GO:0048384  

Length:

1030

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01955

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00041

outside

1  -  1030

 

 

Pi

260.658572

Theta

20.495287

Tajima's D

1.377945

CLR

0.248079

CSRT

0.762061896905155

Interpretation

Uncertain