Gene

KWMTBOMO02893  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003652

Annotation

Dm0-like_lamin_[Spodoptera_frugiperda]

Location

Bomo_Chr5(-):13283745-13287078      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.17

CDS

ATGGCCGCCCAGCTGCGGGAGTACGCCACGCTCATGGACATCAAGATATCGCTCGACCGTGAAATCTCTACCTACAGAGCACTTCTTGAAGGAGAGGAAGACAGGTTAAACCTGACATCTCAGTCGCCGGGGCGAGAGTCTCGCGCGTCAGGCAGCGGCAGCGCGTCGGCCAGCGGGTCCCGCGTCACGCCGTCCCGCCGCGCCACGCCGCTGCGCGCCGCACGCAAGCGCACCCTGCTCGACGAGACCGAGGAGCGCTCGCTGCAGGACTTCAGCGTCACCTCCAGCGCCAAGGGAGACCTCGAGGTCGCCGAGGCCTGCCCCGATGGAACGTTCGTGAAGATCAGGAACAAGGGCAAGAAGGAATTAAGCCTCGGCGGATATCAGATCCTGCGCAAGGCGGGTGATCAAGAAACCGTGTTCAAATTCCATCGCACCGTGAAGCTGGAGCCGGGCGCCGTGAGCACGGTGTGGTCGGCCGACACGGGCGCCTCGCACGACCCGCCGCACGACATCGTCATGAAGGGACAGAAGTGGTTCGTGGCCGATACCTTCACCACGGCTCTGCTCAACAACGAACAGGAGGAAGTCGCAATTTCTGAACGTCAACGACGACAGATAAGCACGAGCGCACAGAGACACCGCGAGCTCGCACACAAGTATCCGCGCCGAGAACAGATCGGAGAGATCCGCGAAGGTGAAGAGAATTGCCGCATCATGTAA

Protein

MAAQLREYATLMDIKISLDREISTYRALLEGEEDRLNLTSQSPGRESRASGSGSASASGSRVTPSRRATPLRAARKRTLLDETEERSLQDFSVTSSAKGDLEVAEACPDGTFVKIRNKGKKELSLGGYQILRKAGDQETVFKFHRTVKLEPGAVSTVWSADTGASHDPPHDIVMKGQKWFVADTFTTALLNNEQEEVAISERQRRQISTSAQRHRELAHKYPRREQIGEIREGEENCRIM

Similarity

Belongs to the intermediate filament family.

Uniprot

H9J2B5   A0A2H1V9Y5   A0A0P0IVE9   S4PXW2   A0A2W1BMT6   A0A0N0PDR8   + More
A0A194PNK2   A0A212ELM3   A0A1E1WWA4   A0A0L7L1G8   A0A0L7QWW3   K7ISC5   A0A154PEI5   A0A2A3EM64   A0A1Y1NFL4   A0A088AD32   A0A232F9J9   E9IKN7   E2AVV9   A0A026W841   A0A182K275   A0A0M8ZSD0   E2C4M7   A0A182TNQ5   A0A336LYN6   A0A182STQ7   A0A0C9R470   F4W5M2   A0A1B0CDW5   A0A0C9PKT8   A0A0C9R9V0   A0A182GN94   A0A182Y9I8   A0A158NSD7   A0A1Y1NC18   A0A182XJQ7   A0A182L578   A0A182HHM7   A0A182URP7   A0A336MTG3   V5GWB7   A0A182RXV6   Q7PZJ0   Q17FG6   A0A1B6DQH4   A0A182M7I4   A0A1B0DD59   A0A151WLV6   A0A151HYG0   D2A5Q1   A0A195ES10   A0A023ETW9   A0A1Q3F388   A0A182QBU3   T1DRP1   A0A182WE19   A0A182PMW4   A0A2J7Q3M4   B0WS03   A0A2M4BND1   A0A182FZW7   A0A2M4AE54   A0A1L8DX61   U5EN31   A0A0J7KKM5   A0A0T6ASS6   A0A2M3Z5K3   A0A182JFM2   A0A2M4BJ15   W5JU89   A0A182N2S1   A0A084WIH0   A0A0K8V002   T1GAR3   A0A034VUV3   A0A1W4WZ32   W8B4Q8   A0A0A1XLP3   A0A0N8CKM0   A0A0P6IZ96   N6U8V8   U4UCY7   A0A0P5A6Y2   A0A0P4YV03   A0A0P5FJ80   A0A0N8DYU1   A0A0P5RHG7   A0A0P6D4Z4   A0A0P5TX23   A0A0N8BYF3   A0A0P5V0Q0   A0A0P5TP46   A0A0P5TF75   A0A0P5VLS0   A0A0P5PEJ9   A0A0P5YUD9   A0A0P6HNL1   A0A067R8L2   A0A0P5NEP2   A0A0N8DP35  

Pubmed

19121390    27164127    23622113    28756777    26354079    22118469    + More
26227816    20075255    28004739    28648823    21282665    20798317    24508170    30249741    21719571    26483478    25244985    21347285    20966253    12364791    17510324    18362917    19820115    24945155    20920257    23761445    24438588    25348373    24495485    25830018    23537049    24845553   

EMBL

BABH01007612    ODYU01001433    SOQ37611.1    KT318393    ALK01985.1    GAIX01004343    + More
JAA88217.1    KZ149960    PZC76369.1    KQ460226    KPJ16419.1    KQ459597    KPI95011.1    AGBW02014037    OWR42369.1    GDQN01000003    JAT91051.1    JTDY01003712    KOB69109.1    KQ414706    KOC63056.1    KQ434889    KZC10286.1    KZ288220    PBC32131.1    GEZM01007082    GEZM01007081    JAV95415.1    NNAY01000590    OXU27516.1    GL764021    EFZ18875.1    GL443213    EFN62381.1    KK107347    QOIP01000007    EZA52277.1    RLU20880.1    KQ435878    KOX69977.1    GL452536    EFN77107.1    UFQS01000212    UFQT01000212    SSX01393.1    SSX21773.1    GBYB01001616    JAG71383.1    GL887655    EGI70519.1    AJWK01008307    AJWK01008308    AJWK01008309    AJWK01008310    AJWK01008311    GBYB01001618    JAG71385.1    GBYB01009717    JAG79484.1    JXUM01076115    JXUM01076116    KQ562925    KXJ74823.1    ADTU01024851    ADTU01024852    ADTU01024853    GEZM01007083    JAV95413.1    APCN01002429    UFQT01001875    SSX32063.1    GALX01003938    JAB64528.1    AAAB01008986    EAA00263.4    CH477271    EAT45279.1    GEDC01009380    JAS27918.1    AXCM01001841    AJVK01031668    AJVK01031669    KQ982956    KYQ48797.1    KQ976730    KYM76484.1    KQ971345    EFA05043.1    KQ981993    KYN31040.1    GAPW01000778    JAC12820.1    GFDL01013056    JAV21989.1    AXCN02001087    GAMD01000565    JAB01026.1    NEVH01019066    PNF23170.1    DS232063    EDS33621.1    GGFJ01005446    MBW54587.1    GGFK01005746    MBW39067.1    GFDF01003034    JAV11050.1    GANO01000751    JAB59120.1    LBMM01006237    KMQ90784.1    LJIG01022884    KRT78232.1    GGFM01003042    MBW23793.1    GGFJ01003918    MBW53059.1    ADMH02000120    ETN67706.1    ATLV01023931    KE525347    KFB50014.1    GDHF01020087    GDHF01011428    GDHF01010988    JAI32227.1    JAI40886.1    JAI41326.1    CAQQ02158731    GAKP01013065    JAC45887.1    GAMC01018269    JAB88286.1    GBXI01017213    GBXI01005197    GBXI01002789    JAC97078.1    JAD09095.1    JAD11503.1    GDIP01122487    JAL81227.1    GDIQ01002179    JAN92558.1    APGK01044203    APGK01044204    KB741021    ENN75032.1    KB632003    ERL87810.1    GDIP01207620    JAJ15782.1    GDIP01226875    JAI96526.1    GDIQ01254440    JAJ97284.1    GDIQ01078540    JAN16197.1    GDIQ01110024    GDIP01130334    JAL41702.1    JAL73380.1    GDIP01155389    GDIQ01111839    GDIQ01084945    LRGB01000248    JAJ68013.1    JAN09792.1    KZS20054.1    GDIP01120782    JAL82932.1    GDIQ01132635    JAL19091.1    GDIP01122486    GDIQ01060806    JAL81228.1    JAN33931.1    GDIP01124850    JAL78864.1    GDIP01127289    JAL76425.1    GDIP01098289    JAM05426.1    GDIQ01139428    JAL12298.1    GDIP01054556    JAM49159.1    GDIQ01016656    JAN78081.1    KK852632    KDR19813.1    GDIQ01143168    JAL08558.1    GDIP01014767    JAM88948.1   

Proteomes

UP000005204    UP000053240    UP000053268    UP000007151    UP000037510    UP000053825    + More
UP000002358    UP000076502    UP000242457    UP000005203    UP000215335    UP000000311    UP000053097    UP000279307    UP000075881    UP000053105    UP000008237    UP000075902    UP000075901    UP000007755    UP000092461    UP000069940    UP000249989    UP000076408    UP000005205    UP000076407    UP000075882    UP000075840    UP000075903    UP000075900    UP000007062    UP000008820    UP000075883    UP000092462    UP000075809    UP000078540    UP000007266    UP000078541    UP000075886    UP000075920    UP000075885    UP000235965    UP000002320    UP000069272    UP000036403    UP000075880    UP000000673    UP000075884    UP000030765    UP000015102    UP000192223    UP000019118    UP000030742    UP000076858    UP000027135   

PRIDE

H9J2B5   

Pfam

PF00038   Filament        + More
PF00932   LTD

Interpro

IPR001322   Lamin_tail_dom        + More
IPR018039   IF_conserved       
IPR039008   IF_rod_dom       
IPR042180   IF_rod_dom_coil1B       
IPR036415   Lamin_tail_dom_sf       
IPR000909   PLipase_C_PInositol-sp_X_dom       
IPR017946   PLC-like_Pdiesterase_TIM-brl       

SUPFAM

SSF74853   SSF74853        + More
SSF51695   SSF51695       

Gene 3D

1.20.5.1160     2.60.40.1260     3.20.20.190    

ProteinModelPortal

H9J2B5   A0A2H1V9Y5   A0A0P0IVE9   S4PXW2   A0A2W1BMT6   A0A0N0PDR8   + More
A0A194PNK2   A0A212ELM3   A0A1E1WWA4   A0A0L7L1G8   A0A0L7QWW3   K7ISC5   A0A154PEI5   A0A2A3EM64   A0A1Y1NFL4   A0A088AD32   A0A232F9J9   E9IKN7   E2AVV9   A0A026W841   A0A182K275   A0A0M8ZSD0   E2C4M7   A0A182TNQ5   A0A336LYN6   A0A182STQ7   A0A0C9R470   F4W5M2   A0A1B0CDW5   A0A0C9PKT8   A0A0C9R9V0   A0A182GN94   A0A182Y9I8   A0A158NSD7   A0A1Y1NC18   A0A182XJQ7   A0A182L578   A0A182HHM7   A0A182URP7   A0A336MTG3   V5GWB7   A0A182RXV6   Q7PZJ0   Q17FG6   A0A1B6DQH4   A0A182M7I4   A0A1B0DD59   A0A151WLV6   A0A151HYG0   D2A5Q1   A0A195ES10   A0A023ETW9   A0A1Q3F388   A0A182QBU3   T1DRP1   A0A182WE19   A0A182PMW4   A0A2J7Q3M4   B0WS03   A0A2M4BND1   A0A182FZW7   A0A2M4AE54   A0A1L8DX61   U5EN31   A0A0J7KKM5   A0A0T6ASS6   A0A2M3Z5K3   A0A182JFM2   A0A2M4BJ15   W5JU89   A0A182N2S1   A0A084WIH0   A0A0K8V002   T1GAR3   A0A034VUV3   A0A1W4WZ32   W8B4Q8   A0A0A1XLP3   A0A0N8CKM0   A0A0P6IZ96   N6U8V8   U4UCY7   A0A0P5A6Y2   A0A0P4YV03   A0A0P5FJ80   A0A0N8DYU1   A0A0P5RHG7   A0A0P6D4Z4   A0A0P5TX23   A0A0N8BYF3   A0A0P5V0Q0   A0A0P5TP46   A0A0P5TF75   A0A0P5VLS0   A0A0P5PEJ9   A0A0P5YUD9   A0A0P6HNL1   A0A067R8L2   A0A0P5NEP2   A0A0N8DP35  

PDB

1IVT     E-value=4.46429e-15,     Score=195

KEGG

101743323    K07611 lamin B | (RefSeq) lamin-C-like

GO

GO:0005882   GO:0005198   GO:0016021   GO:0006629   GO:0008081   GO:0006468   GO:0007169   GO:0016020   GO:0004713   GO:0006281   GO:0048384  

Length:

240

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.14248

outside

1  -  240

 

 

Pi

234.194491

Theta

217.105697

Tajima's D

0.533977

CLR

0.966251

CSRT

0.524323783810809

Interpretation

Uncertain