SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02881  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003534
Annotation
acidic_nucleoplasmic_DNA-binding_protein_1_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 1.95
 

Sequence

CDS
ATGAAAATTGAAAGTAAACCCATAAGATATGCACACGCTGAAGGGCATACTGATGTTTGCTACACAGAAGACGGACGGAATATTATAACTTGTGGTCATGATGGAGATGTCAGAATATGGATGGACATCGAAGATGATGACCCTAATTCTCATTGCGTCGGTGAAAGTGCTTTGGCAGTGTGCTACAAAGATAAGAGACTGTATGTAGCCACTGATAATCATCTTGTACAAGCCTATACATTTCCTGACTTCGATAAAGATGGAATCGTCACCAGATTTACAGCAGCAGTTACTCAAATCAAGAGTAGTTGTAAAATTGAGGCCCTGGGATGTTGTTCAGAAAATATGGAAGCAAAAATATGCAATGTTGAAGGCGGTGCTCCTCTATTTGTCATGAGTAATCACAAAGGCCCTGTTCTCAGTTTAGCTATCTGTCCACACATGAAGTATGCAAGTACGGCCTGTGGAGATGGTTTAATGAGAATATGGGATATTGATACTCAGAAGGTAGTGAAGGAAATAAATTGTGTTCCTAAAATAAACACATTTTATGCTGCTAAAGTTTTATGCAGAATGGATTTTGAGCCATCTGAAGGAAAGTATTTAGCATACCCAAGTAACAGAGAAATAATTTTATTGGATTGCCAAAGTTGGGGCCAGAGAATGTCATTTACGCATAATACAATAAAATGTGCAATCTCCCAATGTCTGTTTTCACCATGCAGTAAATACCTAGCTGGAAATACAGTAGCAGGTCAAATAGCAGTTTGGGACATTGAGTCTGGCTTTTGTATGGGAATTGTTGAACATCCAACTTCCCATAATATTTCTGCAATGGCTTGGAATCCAAAAGGTAATGGTGTTTTAGCCTATTGTGATGTTGCTGGGCAATTAGGAACACTAGTAAATTGCTATGGAAAGAAAAGTAGCAGCTCTGAAAATGAAATCGAAGACATCGAAACAGTGGAGAGAGATAATGGAAATGATGACTTAGCAGATGATCTCATACAGAATTACGAAAGTGATGATGACAATGCTATTTCACTTGAAAAAATAAAGAATGAAACTCTTGGGTTAATAAAAGACAATGATGACTCTAGACCTGCCTCGAGACAAACAGCCTATGTACCTAGTACTGTACCACCACAGCCACCTTTTCAGCCTTCATCAACACCAGCACATCTTGAGCATAGGTACATGTGTTGGAATGAAGTTGGAATTGTAAGGTGTCACACAGTCGAGAATGGAGAGTCAACAGTTGATGTTGAGTTCCATGATACTGCAGTTCACCACGGGATCCATTTAAACAACTATTTGAACCATACAATGGCCAGCTTATCCTCTACTGTCTTAGCTTTGTCTTGTGAGACTCCGAGTAAATTGGTGTGTATTTCGCTAGTGGGCAGTAGCAAGGAGTGGAGCGTGTCGATGCCTGATACTGAAGAGGTGCTATGTGTGACAGCCGCCCACGGACTAGTCGCGTGCGCCACCAATGCGCGCCTCCTGCGTCTCTATACACCCATGGGCACCCAGAGACAGGTGATATCCTTGCCAGGTCCTGTGGTTGCTTTGGGAGGATACAACACCACAGTACTGGCTGTGTACCACAGTACTGACCCTGGTGTTTCCGATCAACATCTCGCTATGGATATCATTGCTATGAATGGACGTCAAGTGCGAAGTAAAACTGTTCCTGTGCCTCTGACCCCAGGGTCCAAACTAACTTGGCTCGGCACCACGGATGTCGGCTCTCCCTGTACCTACGACAGCACTGGTATTTTAAGAATGTACGATGTGTCTAGCGGAGTTTGGATGCCTATCTGTGATACTAACGGACACTCCAAAGGAGCTTCTGATTCGTGGTTTATTGTTTCTATCAGTGAACCCACACAAAAAGTAAGAGCCATCCTATGTAGAGGCACCACTTTCCCGCCAACAGTGCCTAAACCTATAATAGCGGAGTTGCCTATACAGATACCATTATGCGAAATAGAATCGGAAAAGAGTCAGTACGAAGAACAGTTAGTACGTTGGGCGCATACAACTGCCGATGTTGACATGAAGACTGCCAGAGAAACCGCACTGAAATTGTTTGCTCTTGCATGCCGAAGCGAAATAGAGCAAAGAGCCTTAGAATTAATGGAACTACTGAAAGACGATCGTCTCTTACCGCTAGCTGCCAAGTACGCATCGCGCTTAGGCCGCATGCACTTGGCAGAGAAATTAACCAATCTTGCTGAATCATGGGAGAAAGAAACTGATAAACTGAATGTAGCTCAGAACTCTCACTTCCAAGAGTTGGACACACAGGAGACTTATGATGTTACGAACTCAGAGCAAGATTTGAACGCGAGCCTTATAATACCACAGAAATCTAAAGAAAAAAAAATTGAAAACGTCACACCTATAAAGCCAGTGACAATAAAAGCGTCACCCGGTGGCGTTCGGAATCCATTTAGAAAGCAACAGGAAGTGACAAAATGTGTACAAAGTCCGTTAAGTTTAACAGAACGGACATTGGTAGAGGTACACTCCACAGCTGATACTGCTGAAAATACAGACCCCTTGAAACCGTTAACTGGCGAAAATTTTATGGATTGGTTCACAAGGAACAAGTCTCTGCTGGAAGAACGAAATCCGGAGCTGACGCCCTCAGAGCTGTCCCGGCACAGCGTTAAAATGTTCAAAAACGTACAATCGATCGCTCACGCTGACTCGAATAAACGGAAACACGAAGACGCAAACGGGGACACTACAACGAGCGCCCCCAAACAATCAAAACTCAGCGCCTTTGCGTTCCAAAAGAAAACATAA
Protein
MKIESKPIRYAHAEGHTDVCYTEDGRNIITCGHDGDVRIWMDIEDDDPNSHCVGESALAVCYKDKRLYVATDNHLVQAYTFPDFDKDGIVTRFTAAVTQIKSSCKIEALGCCSENMEAKICNVEGGAPLFVMSNHKGPVLSLAICPHMKYASTACGDGLMRIWDIDTQKVVKEINCVPKINTFYAAKVLCRMDFEPSEGKYLAYPSNREIILLDCQSWGQRMSFTHNTIKCAISQCLFSPCSKYLAGNTVAGQIAVWDIESGFCMGIVEHPTSHNISAMAWNPKGNGVLAYCDVAGQLGTLVNCYGKKSSSSENEIEDIETVERDNGNDDLADDLIQNYESDDDNAISLEKIKNETLGLIKDNDDSRPASRQTAYVPSTVPPQPPFQPSSTPAHLEHRYMCWNEVGIVRCHTVENGESTVDVEFHDTAVHHGIHLNNYLNHTMASLSSTVLALSCETPSKLVCISLVGSSKEWSVSMPDTEEVLCVTAAHGLVACATNARLLRLYTPMGTQRQVISLPGPVVALGGYNTTVLAVYHSTDPGVSDQHLAMDIIAMNGRQVRSKTVPVPLTPGSKLTWLGTTDVGSPCTYDSTGILRMYDVSSGVWMPICDTNGHSKGASDSWFIVSISEPTQKVRAILCRGTTFPPTVPKPIIAELPIQIPLCEIESEKSQYEEQLVRWAHTTADVDMKTARETALKLFALACRSEIEQRALELMELLKDDRLLPLAAKYASRLGRMHLAEKLTNLAESWEKETDKLNVAQNSHFQELDTQETYDVTNSEQDLNASLIIPQKSKEKKIENVTPIKPVTIKASPGGVRNPFRKQQEVTKCVQSPLSLTERTLVEVHSTADTAENTDPLKPLTGENFMDWFTRNKSLLEERNPELTPSELSRHSVKMFKNVQSIAHADSNKRKHEDANGDTTTSAPKQSKLSAFAFQKKT

Summary

EMBL
FJ357423    ACJ04420.1    GAIX01004273    JAA88287.1    ODYU01002386    SOQ39818.1    + More
KQ461150    KPJ08679.1    KQ459597    KPI94998.1    AGBW02010734    OWR47950.1    NWSH01006069    PCG63691.1    BABH01007642    BABH01007643    BABH01007644    KK853004    KDR12601.1    PYGN01000608    PSN43420.1    AJVK01031858    AJVK01031859    AJVK01031860    AJVK01031861    GAKP01007650    JAC51302.1    GBXI01017259    JAC97032.1    AAZX01006832    GDHF01016989    JAI35325.1    OUUW01000001    SPP75766.1    CH954179    EDV56097.1    AE013599    BT023774    AAF58306.1    AAZ41782.1    KQ434827    KZC07659.1    DQ138854    ABA86460.1    CH902619    EDV37970.1    DQ138859    ABA86465.1    CM000362    CM002911    EDX06995.1    KMY93653.1    UFQT01000174    SSX21119.1    CM000071    EAL25944.1    AAAB01008807    EAA04546.4    AJVK01034376    CH479223    EDW34995.1    APCN01000201    GEDC01010461    JAS26837.1    CM000158    EDW90550.1    CH480816    EDW47792.1    DQ138855    ABA86461.1    GEZM01036900    GEZM01036899    JAV82352.1    DQ138857    ABA86463.1    KZ288189    PBC34564.1    DQ138858    ABA86464.1    DQ138856    ABA86462.1    CH963848    EDW73749.1    AXCM01003060    ATLV01024570    KE525352    KFB51662.1    AXCN02000384    GFDL01015784    JAV19261.1    CH940648    EDW60517.1    GL448504    EFN84559.1    CH933808    EDW10643.1    KQ435794    KOX73779.1    NNAY01000983    OXU25618.1    CH916375    EDV98142.1    GL769313    EFZ10542.1    KQ971371    EFA09875.2    CP012524    ALC41937.1    DS232314    EDS39856.1    CCAG010016893    KQ981673    KYN38256.1    GEBQ01003658    JAT36319.1    KK107372    EZA51773.1    CVRI01000024    CRK92164.1    APGK01019502    KB740107    ENN81357.1    GL435766    EFN72668.1    GBHO01030081    GBHO01030080    GBHO01030079    GBHO01030078    JAG13523.1    JAG13524.1    JAG13525.1    JAG13526.1    GAMC01014992    GAMC01014990    JAB91563.1    GG666512    EEN60543.1    KQ978219    KYM96439.1    GBYB01007622    JAG77389.1    ADTU01011122    ADTU01011123    ABQF01004108    ABQF01004109    KQ980581    KYN15387.1    KL241950    KFV12474.1    GDIP01079230    GDIP01045743    GDIQ01034757    GDIQ01005765    JAM24485.1    JAN88972.1    GL732766    EFX65043.1    GDIP01158426    JAJ64976.1    KL267907    KFZ62741.1    KQ976540    KYM81265.1    KK713157    KFQ34621.1    KB744769    EOA94440.1    KL411327    KFR05812.1   
Pfam
PF00400   WD40        + More
PF12341   Mcl1_mid
PF13378   MR_MLE_C
PF12894   ANAPC4_WD40
PF00083   Sugar_tr
PF02746   MR_MLE_N
PF08969   USP8_dimer
PF00505   HMG_box
PF08662   eIF2A
Interpro
IPR019775   WD40_repeat_CS        + More
IPR022100   Mcl1_mid       
IPR036322   WD40_repeat_dom_sf       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR013342   Mandelate_racemase_C       
IPR029065   Enolase_C-like       
IPR036849   Enolase-like_C_sf       
IPR024977   Apc4_WD40_dom       
IPR018110   Mandel_Rmase/mucon_lact_enz_CS       
IPR005828   MFS_sugar_transport-like       
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR036910   HMG_box_dom_sf       
IPR011041   Quinoprot_gluc/sorb_DH       
IPR013341   Mandelate_racemase_N_dom       
IPR029017   Enolase-like_N       
IPR015063   USP8_dimer       
IPR009071   HMG_box_dom       
IPR013979   TIF_beta_prop-like       
SUPFAM
SSF50978   SSF50978        + More
SSF50969   SSF50969       
SSF51604   SSF51604       
SSF103473   SSF103473       
SSF50952   SSF50952       
SSF47095   SSF47095       
PDB
5GVB     E-value=3.53406e-70,     Score=677

Ontologies

Topology

Length:
937
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02842
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00046
outside
1  -  937
 
 

Population Genetic Test Statistics

Pi
260.037821
Theta
187.48779
Tajima's D
0.87561
CLR
0.201551
CSRT
0.626668666566672
Interpretation
Uncertain
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