Gene

KWMTBOMO02874

Annotation

endonuclease_and_reverse_transcriptase-like_protein_[Bombyx_mori]

Location

Bomo_Chr5(+):13027054-13028232      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.816

CDS

ATGACCATTAATGCTGGCGTTCCACAAGGTTCGGTGCTCTCCCCCACGCTTTTCATCCTGTATATCAATGACATGCTGTCTATTGATGGCATGCATTGCTATGCGGATGACAGCACGGGGGATGCGCGATATATCGGCCATCAGAGTCTCTCTCGGAGCGTGGTGCAAGAGAGACGATCAAAACTTGTGTCTGAAGTGGAGAACTCTCTGGGGCGAGTCTCCGAGTGGGGTGAATCGAACTTAGTTCAATTCAACCCGTTGAAGACACAAGTTTGCGCGTTCACTGCGAAGAAGGACCCCTTTGTCATGGCGCCGCAATTCCAAGGAGTATCCCTGCAACCTTCCGCGAGCATCGGGATACTTGGGGTCGACATTTCGAGTGATGTCCAATTTCGGAGTCATTTGGAAGGCAAAGCCAAGTTGGCGTCCAAAATGCTGGGAGTCCTCAACAGAGCGAAGCGGTATTTCACGCCTGGACAAAGACTTTTGCTTTATAAAGCACAAGTCCGGCCTCGCGTGGAGTACTGCTCCCATCTCTGGGCCGGGGCTCCCAAATACCAGCTTCTTCCATTTGACTCCATACAGAGGAGGGCCGTTCGAATCGTCGATAATCCCATTCTCGCGGATCGTTTGGAACCTTTGGGTCTGCGGAGGGACTTCTGTTCCCTCTGTATTTTGTACCGAATGTTCCATGGGGAGTGCTCTGAGGAATTGTTCGAGATGATACCGGCATCTCGTTTTTACCATCGCACCGCCCGCCACCGGAGTAGAGTTCATCCATACTACCTGGAGCCACTGCGGTCATCGACAGTGCGTTTCCAGAGGTCTTTTCTGCCACGTACCATCCGGCTATGGAATGAGCTCCCCTCCACGGTGTTTCCCGAGCGCTATGACATGTCCTTCTTTAAAAGAGGCTTGTGGAGAGTATTAAGCGATAGGCAGCGGCTTGGCTCTGCCCCTGGCATTGCTGAAGTCCATGGGCGACGGTAA

Protein

MTINAGVPQGSVLSPTLFILYINDMLSIDGMHCYADDSTGDARYIGHQSLSRSVVQERRSKLVSEVENSLGRVSEWGESNLVQFNPLKTQVCAFTAKKDPFVMAPQFQGVSLQPSASIGILGVDISSDVQFRSHLEGKAKLASKMLGVLNRAKRYFTPGQRLLLYKAQVRPRVEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILADRLEPLGLRRDFCSLCILYRMFHGECSEELFEMIPASRFYHRTARHRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSTVFPERYDMSFFKRGLWRVLSDRQRLGSAPGIAEVHGRR

Uniprot

Q6UV17   Q5KTM5   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   J9GT67   + More
T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A1E1XN74   A0A131Y4Q4   A0A1E1XNW6   A0A1E1XNL1   A0A1E1X2T1   A0A147BNQ9   A0A131XQR9   A0A147BJ69   A0A131Y3E3   A0A090XE26   A0A0P4VVV8   A0A131XT39   A0A147BJQ0   A0A2B4RTL1   A0A1G4M3N1   A0A1E1X2P5   A0A2H9T3F5   A0A2H9T4Y5   A0A147BQ97   A0A131XRE4   A0A147BJZ1   A0A1E1XGC7   A0A0K8RPQ6   A0A1G4M5I2   A0A147BNC9   A0A2G8KET5   A0A0P4VTV9   A0A1E1XVU2   A0A1E1XPS6   A0A147BMA3   A0A2H9T4Q5   A0A1E1X2R3   A0A147BBR8   A0A147BB29   A0A131XV56   A0A147BI04   A0A2I0UC10   A0A1E1XN53   A0A2H9T4F1   V5H8T0   A0A2B4RFN8   W4ZIH4   A0A147BPB7   A0A147BID3   A0A147BMF5   A0A1E1XM20   A0A147BLD0   A0A147BRL4   A0A131XTA8   A0A2H9T5P0   A0A210QQ08   W4ZGQ7   W4Z5Z2   W4Z0S9   A0A147BKN8   A0A1E1WW75   W4XYH1   A0A147BL51   A0A2H9T2R7   A0A210QEX7   A0A147BLD9   A0A131XKC5   A0A1E1X2P4   A0A147BKL3   W4YZP0   A0A131Y2C9   A0A1E1XGB0   A0A2H9T361   A0A147BKM4   A0A2H9T2Z5   A0A3M0JFD2   A0A1E1X2M2   A0A147BJE1   A0A147BLZ0   A0A3P9IMI8  

Pubmed

30148503    23251564    24065732    28345194    28503490    29209593    + More
29652888    25970599    29150518    29023486    25765539    28812685    28049606    17554307   

EMBL

AY359886    AAQ57129.1    AB126052    BAD86652.1    ODYU01002162    SOQ39302.1    + More
GDRN01105059    JAI57791.1    DPOC01000269    HCX22453.1    AMCI01002135    EJX03495.1    HAAD01001474    CDG67706.1    LWDP01000391    ORD92879.1    GFAC01000919    JAT98269.1    GEFM01002394    JAP73402.1    GEGO01001118    JAR94286.1    GFAA01002657    JAU00778.1    GEFM01002324    JAP73472.1    GFAA01002479    JAU00956.1    GFAA01002514    JAU00921.1    GFAC01005646    JAT93542.1    GEGO01003312    JAR92092.1    GEFM01006417    JAP69379.1    GEGO01004630    JAR90774.1    GEFM01002419    JAP73377.1    GBIH01002577    JAC92133.1    GDRN01111277    JAI56804.1    GEFM01006421    JAP69375.1    GEGO01004433    JAR90971.1    LSMT01000297    PFX20951.1    FLMD02000154    SCV66010.1    GFAC01005665    JAT93523.1    NSIT01000412    PJE77717.1    NSIT01000218    PJE78268.1    GEGO01002473    JAR92931.1    GEFM01005882    JAP69914.1    GEGO01004295    JAR91109.1    GFAC01000861    JAT98327.1    GADI01001229    JAA72579.1    FLMD02000280    SCV66640.1    GEGO01003111    JAR92293.1    MRZV01000639    PIK46517.1    GDRN01111334    JAI56796.1    GFAA01000066    JAU03369.1    GFAA01002385    JAU01050.1    GEGO01003518    JAR91886.1    NSIT01000239    PJE78188.1    GFAC01005670    JAT93518.1    GEGO01007187    JAR88217.1    GEGO01007438    JAR87966.1    GEFM01006250    JAP69546.1    GEGO01005479    JAR89925.1    KZ505886    PKU43598.1    GFAA01002726    JAU00709.1    NSIT01000271    PJE78081.1    GANP01010944    JAB73524.1    LSMT01000588    PFX15986.1    AAGJ04095885    GEGO01002794    JAR92610.1    GEGO01004857    JAR90547.1    GEGO01003427    JAR91977.1    GFAA01003161    JAU00274.1    GEGO01004132    JAR91272.1    GEGO01002025    JAR93379.1    GEFM01005909    JAP69887.1    NSIT01000164    PJE78524.1    NEDP02002425    OWF50811.1    AAGJ04096877    AAGJ04079835    AAGJ04088192    GEGO01004056    JAR91348.1    GFAC01007905    JAT91283.1    AAGJ04171490    GEGO01003895    JAR91509.1    NSIT01000538    PJE77518.1    NEDP02004020    OWF47171.1    GEGO01003794    JAR91610.1    GEFH01001042    JAP67539.1    GFAC01005653    JAT93535.1    GEGO01004422    JAR90982.1    GEFM01002397    JAP73399.1    GFAC01000920    JAT98268.1    NSIT01000462    PJE77627.1    GEGO01004061    JAR91343.1    NSIT01000477    PJE77602.1    QRBI01000146    RMB99817.1    GFAC01005673    JAT93515.1    GEGO01004497    JAR90907.1    GEGO01003594    JAR91810.1   

Proteomes

UP000225706    UP000230750    UP000007110    UP000242188    UP000269221    UP000265200    + More

PRIDE

Q6UV17    Q5KTM5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF08159   NUC153
PF03372   Exo_endo_phos
PF01425   Amidase

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036322   WD40_repeat_dom_sf       
IPR040382   NOL10/Enp2       
IPR012580   NUC153       
IPR001680   WD40_repeat       
IPR000120   Amidase       
IPR036928   AS_sf       
IPR023631   Amidase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF50978   SSF50978       
SSF75304   SSF75304       

Gene 3D

3.60.10.10     3.90.1300.10    

ProteinModelPortal

Q6UV17   Q5KTM5   A0A2H1VFZ3   A0A0P4VXU0   A0A3D5S1K1   J9GT67   + More
T2M6M7   A0A1Y1S3P2   A0A1E1XGQ7   A0A131Y4I8   A0A147BU27   A0A1E1XN74   A0A131Y4Q4   A0A1E1XNW6   A0A1E1XNL1   A0A1E1X2T1   A0A147BNQ9   A0A131XQR9   A0A147BJ69   A0A131Y3E3   A0A090XE26   A0A0P4VVV8   A0A131XT39   A0A147BJQ0   A0A2B4RTL1   A0A1G4M3N1   A0A1E1X2P5   A0A2H9T3F5   A0A2H9T4Y5   A0A147BQ97   A0A131XRE4   A0A147BJZ1   A0A1E1XGC7   A0A0K8RPQ6   A0A1G4M5I2   A0A147BNC9   A0A2G8KET5   A0A0P4VTV9   A0A1E1XVU2   A0A1E1XPS6   A0A147BMA3   A0A2H9T4Q5   A0A1E1X2R3   A0A147BBR8   A0A147BB29   A0A131XV56   A0A147BI04   A0A2I0UC10   A0A1E1XN53   A0A2H9T4F1   V5H8T0   A0A2B4RFN8   W4ZIH4   A0A147BPB7   A0A147BID3   A0A147BMF5   A0A1E1XM20   A0A147BLD0   A0A147BRL4   A0A131XTA8   A0A2H9T5P0   A0A210QQ08   W4ZGQ7   W4Z5Z2   W4Z0S9   A0A147BKN8   A0A1E1WW75   W4XYH1   A0A147BL51   A0A2H9T2R7   A0A210QEX7   A0A147BLD9   A0A131XKC5   A0A1E1X2P4   A0A147BKL3   W4YZP0   A0A131Y2C9   A0A1E1XGB0   A0A2H9T361   A0A147BKM4   A0A2H9T2Z5   A0A3M0JFD2   A0A1E1X2M2   A0A147BJE1   A0A147BLZ0   A0A3P9IMI8  

KEGG

105842661    no KO assigned | (RefSeq) uncharacterized LOC105842661

GO

GO:0003964   GO:0004519   GO:0005634   GO:0004040   GO:0016021  

PANTHER

PTHR14927   PTHR11895  

Length:

329

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.71683

Exp number, first 60 AAs:

0.7142

Total prob of N-in:

0.04474

outside

1  -  329

 

 

Pi

56.271382

Theta

53.661993

Tajima's D

0.672956

CLR

1.517245

CSRT

0.565571721413929

Interpretation

Uncertain