SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02864
Pre Gene Modal
BGIBMGA003662
Annotation
PREDICTED:_T-complex-associated_testis-expressed_protein_1-like_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 3.036
 

Sequence

CDS
ATGAAGATTCCATATCTTGTATCCCAGAATACAAGGGAAGCTTACGCTACATCGCATGAAATGAAGACTTCTATTGCTGAAGCCAAGCGTAAAATTGTGGCTGAAGATTTCGAATGGGATGATGGCCTTACTCCAGCACCCCTTAGCTACTTTGCCGCTCTTAGTTTGTCGAGAGCATTTCATATTATTAATCCATTAAACAAAATACTTCAGAAAGATGTTGATATTCTAATGGATTTGTATCCGGCTGATATTCCCTTGAAATGTAGTGTGCCGCTAATACAGGATGAACAATACTGGAAAAGATCTTATGCCACTAAGTTTCCGTCCAGAAAGGAGTTGAACGTGCCATTTTGGAAAGGGAAATTCTTGTCAGCATGTCTACAAGACTATTTAGAAAACGTTAACCCTGATGTCTTTATAGAAGAAGATGCTGTAGAATTGGCAACTTTGGTTAGTCCCTACATTTATGAATTGGGGTTAAATCAACTACGCATGGTTCGGCAACCGACCCCACCAGTCCCTTTTGGGAATATTGTTGAAGACACGTGCCCTTATAGCGTCCCTAAATTATTCGATCACGTGCCTCTGGAACCGGTATTGGTTAAACTTTACAACCTCCAAGAGATATCTTTAGTTTTTGGACTCAATAATATTGAAGACGATTATTTACCAAGATACTTTGAATTTTCAATGGGAGACTGCGAATCTTTATGTCGTGGCCTAGAAGATTTACGACACCTCAAATTGTTTCGGATCAACCGAAGCAATCTAGACTGCTCGAAAGTAAAATTGATTCTACAGAATCTTGTAAAAAAAGAAAGCATTGAGGAGCTTGACTTCAACCATTGTAAGATCGGCGATTATGGAATGAAAGCTCTCGGAGGTTTCATTTACATTCACAAAAATTTAAAAAGAGTGAGAATTGCTAATAACCGATTTAAAGAGGTTGGCGTTCAGGGAATAGCTTATGCCTTGCAAATGAAACCTGCGGCTCCAATAGAACTTTTAGATTTTAGCCTGAATCCAATGTCTTTGGAATGTGCAACAATCTTTGCCGCTGCGTTCGTACGCTGCAAGGAAAAGCCACAAACGTTAATCATCAACTCTTGTGGCTTCAAAGGAGAATCTGCTGAGAAGATTGCAGGATTAATAAGCTTAAATCGAGGTCTGACCAGATTAGATTTGGCAGCTAATGACCTATCGGGAGAAGCTGAAAGAACTTTGGTCAAAGCCGTCGAACAGAACAGAAATATTCTTAGAATAGATTTAAGAAGGACACATATTTCAGAAGAAACTCAATGCAAGATCGACAAACTGTTGGAAAGAAACAAGAACTTAATTGGTCAAGACAGGGAACCGAGCGACGAGATACCGCCTCTTTACCTAAACGAACCTGAATATTTAATCTGGGAATACAATCCCAATAACCCCGACTACATACCCGGCCGATACCCGGAACGAGTTCCAGAAGTTTAA
Protein
MKIPYLVSQNTREAYATSHEMKTSIAEAKRKIVAEDFEWDDGLTPAPLSYFAALSLSRAFHIINPLNKILQKDVDILMDLYPADIPLKCSVPLIQDEQYWKRSYATKFPSRKELNVPFWKGKFLSACLQDYLENVNPDVFIEEDAVELATLVSPYIYELGLNQLRMVRQPTPPVPFGNIVEDTCPYSVPKLFDHVPLEPVLVKLYNLQEISLVFGLNNIEDDYLPRYFEFSMGDCESLCRGLEDLRHLKLFRINRSNLDCSKVKLILQNLVKKESIEELDFNHCKIGDYGMKALGGFIYIHKNLKRVRIANNRFKEVGVQGIAYALQMKPAAPIELLDFSLNPMSLECATIFAAAFVRCKEKPQTLIINSCGFKGESAEKIAGLISLNRGLTRLDLAANDLSGEAERTLVKAVEQNRNILRIDLRRTHISEETQCKIDKLLERNKNLIGQDREPSDEIPPLYLNEPEYLIWEYNPNNPDYIPGRYPERVPEV

Summary

EMBL
BABH01007703    KZ149903    PZC78419.1    AGBW02011843    OWR46046.1    NWSH01000238    + More
PCG78104.1    JTDY01000526    KOB76803.1    ODYU01002619    SOQ40355.1    KQ461150    KPJ08694.1    KQ459597    KPI94985.1    NEVH01006990    PNF36174.1    KQ971312    KYB29096.1    APGK01053935    KB741239    KB632275    ENN72128.1    ERL91102.1    KQ981954    KYN32206.1    KK852832    KDR15318.1    ADTU01010303    ADTU01010304    ADTU01010305    ADTU01010306    KQ976600    KYM79451.1    GEZM01047851    JAV76721.1    KQ982519    KYQ55518.1    KQ414616    KOC68411.1    LBMM01001441    KMQ96319.1    KQ977642    KYN01070.1    KQ769179    OAD52963.1    GBYB01011031    JAG80798.1    QOIP01000009    RLU19080.1    KQ435911    KOX68938.1    GL888565    EGI59449.1    GECZ01009458    JAS60311.1    DS235845    EEB18430.1    KQ435207    KZC15071.1    KK107231    EZA54956.1    ODYU01008934    SOQ52955.1    PYGN01000293    PSN49122.1    JTDY01002365    KOB71571.1    KZ288226    PBC31865.1    NOWV01000128    RDD39630.1    DS985255    EDV21037.1    KV891983    OON21816.1    NIVC01000576    PAA80519.1    NIVC01002775    PAA55297.1    KL596850    KER23432.1    JH000276    RAZU01000009    EGW01340.1    RLQ79504.1    KQ971343    EFA04350.1    NWSH01002160    PCG69016.1    AMQN01012230    AMQN01012231    AMQN01012232    AMQN01012233    KB309387    ELT94524.1    KB017589    EPY76715.1    DF143171    GAA29628.2    JARO02009484    KPP61583.1    AGTP01010790    AGTP01010791    RJVU01048958    ROL43034.1    GL438129    EFN69518.1    AGBW02010386    OWR48587.1    JH818024    EKC39838.1    AAGJ04057178    LZPO01116605    OBS58413.1    AANG04003966    ACTA01184071    GL192391    EFB21282.1    NEDP02000201    OWF56407.1    AEMK02000055    DQIR01029261    HCZ84736.1    AAQR03061276    AMGL01058706    PZQS01000008    PVD25658.1    JH881611    ELR53224.1    AAKN02021390    AHAT01008937    MKHE01000007    OWK13494.1    CU660013    AEYP01006062    AC096454    CH473987    EDM18734.1    AKHW03001146    KYO43408.1    CYRY02001614    VCW66241.1    APCN01000241    UZAN01042188    VDP75249.1    AAPE02036885    AAPE02036886    MRZV01000140    PIK57504.1   
Pfam
PF13516   LRR_6        + More
PF10613   Lig_chan-Glu_bd
PF01094   ANF_receptor
Interpro
IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt       
IPR019594   Glu/Gly-bd       
IPR028082   Peripla_BP_I       
IPR001828   ANF_lig-bd_rcpt       
IPR036047   F-box-like_dom_sf       
SUPFAM
SSF53822   SSF53822        + More
SSF81383   SSF81383       
Gene 3D
PDB
4PEQ     E-value=2.04439e-08,     Score=142

Ontologies

Topology

Subcellular location
  
Length:
492
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0231
Exp number, first 60 AAs:
0.00462
Total prob of N-in:
0.00260
outside
1  -  492
 
 

Population Genetic Test Statistics

Pi
138.056252
Theta
128.230829
Tajima's D
-0.462005
CLR
0.740692
CSRT
0.251737413129344
Interpretation
Possibly Positive selection
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