SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02849
Pre Gene Modal
BGIBMGA003665
Annotation
PREDICTED:_outer_dense_fiber_protein_3-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.964
 

Sequence

CDS
ATGCCTTGGGGGTGGGAATGCCGAGCAAAACACATTAAACAACTACCATCGAAGCCTACAGAGCGTCGCCGAACAAGTCACTCAACTAAATCTCCCGCACCTAATCACTATGAATTACCTCAGATATTCTGCGGTAAAGGTTTCTCGAAAGTAAAACGTGCACCAGCCTTTACATTTGGTCACTTAACAAAATCTAATCTGGCCAAACCAGTCACCACACCGTACGCCCCAATGTTCGACATTCAAGGACTTGGGAGACAAGGTCCATACAAAATAACACATAGCGTTGTTTCGCCACAAGTCGCACCCGTAGAGGATCGAGTAAAAATACCAGGCCCGGGCAGTTATGCCCCAAAATTTTCGATCCAATACAAACGACCACCTGCGTACAGCTTACGAGCACCGGCGAGACCCCAGTACGAACCCTGGGATCAGTGGACGCCGCCACCGAATATGTACTGTCCTCCTATACCTTACAAGTAA
Protein
MPWGWECRAKHIKQLPSKPTERRRTSHSTKSPAPNHYELPQIFCGKGFSKVKRAPAFTFGHLTKSNLAKPVTTPYAPMFDIQGLGRQGPYKITHSVVSPQVAPVEDRVKIPGPGSYAPKFSIQYKRPPAYSLRAPARPQYEPWDQWTPPPNMYCPPIPYK

Summary

Pfam
PF07004   SHIPPO-rpt
Interpro
IPR010736   SHIPPO-rpt       

Ontologies

GO

Topology

Length:
160
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00107
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.22507
outside
1  -  160
 
 

Population Genetic Test Statistics

Pi
287.232812
Theta
218.430899
Tajima's D
1.008824
CLR
0
CSRT
0.659917004149792
Interpretation
Uncertain
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