Gene

KWMTBOMO02839  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003520

Annotation

PREDICTED:_39S_ribosomal_protein_L53?_mitochondrial_[Papilio_polytes]

Location

Bomo_Chr5(+):12366396-12367889      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.105 Nuclear   Reliability : 2.026

CDS

ATGTCTATTCCGTATAGCGGTACAATTAGAAGATCCAAAGGTGTTGTTTCAGCCATTGGAAAACAACTAAAAGCAGTTAATTTAAAGGCTGCTAAAAAAATTACCATAAAATTTGATCCATTTGGAGAAAACGCAACTCACACAAGGAATTTTGCTCATTACATCAGTGCACCTAAAATAGCAATCACAAATCCCAATTGCTCTGTGAAGACCGAAGTGTTGTGTGACAGGAGTGAGCCAACAGTAGAAATAACACTCTTGCCTGCAATTGCAGCAACTGCAAAAATACAGAAAGTGACTTTAAGAAGTGAGAATCTTACTTGTCTTGAAATTCTCCAATTATTGAATAAGCACATTTCTTCTTTAGCACCTGTAGAACTACCACCAACTACACTACAAACTAAGTCAGATAAAAAGAAGACAAAAACAAAATAA

Protein

MSIPYSGTIRRSKGVVSAIGKQLKAVNLKAAKKITIKFDPFGENATHTRNFAHYISAPKIAITNPNCSVKTEVLCDRSEPTVEITLLPAIAATAKIQKVTLRSENLTCLEILQLLNKHISSLAPVELPPTTLQTKSDKKKTKTK

Uniprot

H9J1Y3   A0A2W1BR66   A0A2A4K086   A0A2H1X2W8   A0A194QYP7   A0A194PNS4   + More
A0A1E1WUJ4   A0A0L7LEX7   A0A212F1Y5   A0A182NPN1   A0A182WEE8   A0A182IXD0   U5ESZ2   W5JI72   A0A2M3ZIG1   A0A2M4C2K3   A0A182YPP8   A0A2M4AXU2   A0A182R4G9   A0A182MHP3   A0A182QSF6   A0A1Q3FA62   A0A182FU30   A0A182PC51   B0WFU9   A0A1W4VCH0   A0A182HH22   A0A182V2T9   A0A182TVP3   A0A182XKR6   A0A182L4H6   Q7PZ40   B3MHG2   B4P448   B4N5W0   B4INL4   B3NRF3   A1Z9J6   T1GGZ1   B4QEW0   A0A0M3QV88   B4LJF2   Q95S87   Q16EW2   A0A023EF38   A0A023EGJ9   A0A1L8EDJ6   A0A0K8TSA9   A0A1I8Q463   A0A1A9UET3   A0A1A9Y4T7   T1PEG9   A0A1A9X4B4   A0A336MSH9   A0A158NQ23   A0A1B0GAK4   A0A1A9ZQU0   A0A1B0BXI8   A0A0L0C8J4   A0A3L8D5M5   A0A336N1B9   A0A195BI04   A0A1J1J7R1   Q28ZU0   A0A2R7WS45   A0A034V606   B4GGS8   B4JW19   R4WQ23   A0A0K8UIJ5   A0A154PI56   B4KTB6   A0A0P4VSC1   A0A2P8YJ52   A0A069DW19   C4WRT3   A0A0A1WJ11   V5GPK6   A0A195DEJ9   A0A0V0G661   A0A0A9XM32   A0A2S2P2R7   A0A195CUU5   A0A0C9RBM8   A0A023FA81   A0A1Y1K7F9   A0A088A9Y7   A0A1W4X276   N6U2P2   A0A1B6EMK7   A0A0M8ZRT3   A0A2A3EUA2   A0A1B6LTP7   N6UQE6   A0A1S3CYC2   A2I437   A0A224Y180   G1K078   A0A1B6JVT7   A0A0L7QIX0  

Pubmed

19121390    28756777    26354079    26227816    22118469    20920257    + More
23761445    25244985    20966253    12364791    14747013    17210077    17994087    17550304    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    17510324    24945155    26483478    26369729    25315136    21347285    26108605    30249741    15632085    25348373    23691247    27129103    29403074    26334808    25830018    25401762    26823975    25474469    28004739    23537049    21736942   

EMBL

BABH01007741    KZ150007    PZC75166.1    NWSH01000356    PCG77062.1    ODYU01013029    + More
SOQ59655.1    KQ461150    KPJ08711.1    KQ459597    KPI94967.1    GDQN01000410    JAT90644.1    JTDY01001385    KOB74017.1    AGBW02010786    OWR47742.1    GANO01002998    JAB56873.1    ADMH02001328    ETN62983.1    GGFM01007583    MBW28334.1    GGFJ01010348    MBW59489.1    GGFK01012305    MBW45626.1    AXCM01002270    AXCN02001648    GFDL01010570    JAV24475.1    DS231921    EDS26484.1    APCN01002375    AAAB01008986    EAA00063.3    CH902619    EDV37962.1    CM000158    EDW90558.1    CH964154    EDW79749.1    CH676469    EDW49161.1    CH954179    EDV56105.1    AE013599    BT072874    AAM68563.1    ACN63496.1    CAQQ02194765    CM000362    CM002911    EDX06987.1    KMY93639.1    CP012524    ALC41953.1    CH940648    EDW60532.1    AY060913    AAL28461.1    CH478567    CH477878    EAT32773.1    EAT35423.1    JXUM01106783    GAPW01005640    KQ565084    JAC07958.1    KXJ71355.1    GAPW01005669    JAC07929.1    GFDG01002022    JAV16777.1    GDAI01000577    JAI17026.1    KA646333    AFP60962.1    UFQT01001625    SSX31227.1    ADTU01022890    CCAG010006300    JXJN01022238    JRES01000857    KNC27719.1    QOIP01000013    RLU15313.1    UFQT01004578    SSX35721.1    KQ976464    KYM84455.1    CVRI01000075    CRL08435.1    CM000071    EAL25523.1    KK855399    PTY22388.1    GAKP01021003    JAC37949.1    CH479183    EDW35698.1    CH916375    EDV98157.1    AK417791    BAN21006.1    GDHF01025951    JAI26363.1    KQ434924    KZC11541.1    CH933808    EDW10628.1    GDKW01001236    JAI55359.1    PYGN01000556    PSN44290.1    GBGD01003375    JAC85514.1    ABLF02024464    AK339905    BAH70603.1    GBXI01015777    JAC98514.1    GALX01002417    JAB66049.1    KQ980934    KYN11318.1    GECL01002639    JAP03485.1    GBHO01025460    GBHO01025459    GBRD01001696    GDHC01021281    GDHC01009714    JAG18144.1    JAG18145.1    JAG64125.1    JAP97347.1    JAQ08915.1    GGMR01011144    MBY23763.1    KQ977279    KYN04292.1    GBYB01013939    JAG83706.1    GBBI01000321    JAC18391.1    GEZM01090030    JAV57382.1    APGK01010413    APGK01052157    KB741210    KB738186    ENN72837.1    ENN82735.1    GECZ01030609    JAS39160.1    KQ435936    KOX68333.1    KZ288186    PBC34852.1    GEBQ01012946    JAT27031.1    APGK01008091    KB737592    ENN82991.1    EF070540    ABM55606.1    GFTR01002237    JAW14189.1    JO494959    AEL79189.1    GECU01031893    GECU01004396    JAS75813.1    JAT03311.1    KQ415568    KOC58578.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000037510    UP000007151    + More
UP000075884    UP000075920    UP000075880    UP000000673    UP000076408    UP000075900    UP000075883    UP000075886    UP000069272    UP000075885    UP000002320    UP000192221    UP000075840    UP000075903    UP000075902    UP000076407    UP000075882    UP000007062    UP000007801    UP000002282    UP000007798    UP000001292    UP000008711    UP000000803    UP000015102    UP000000304    UP000092553    UP000008792    UP000008820    UP000069940    UP000249989    UP000095300    UP000078200    UP000092443    UP000095301    UP000091820    UP000005205    UP000092444    UP000092445    UP000092460    UP000037069    UP000279307    UP000078540    UP000183832    UP000001819    UP000008744    UP000001070    UP000076502    UP000009192    UP000245037    UP000007819    UP000078492    UP000078542    UP000005203    UP000192223    UP000019118    UP000053105    UP000242457    UP000079169    UP000053825   

PRIDE

H9J1Y3    A1Z9J6    Q95S87   

Pfam

PF10780   MRP_L53        + More
PF16087   DUF4817

Interpro

IPR019716   Ribosomal_L53_mit        + More
IPR032135   DUF4817       

ProteinModelPortal

H9J1Y3   A0A2W1BR66   A0A2A4K086   A0A2H1X2W8   A0A194QYP7   A0A194PNS4   + More
A0A1E1WUJ4   A0A0L7LEX7   A0A212F1Y5   A0A182NPN1   A0A182WEE8   A0A182IXD0   U5ESZ2   W5JI72   A0A2M3ZIG1   A0A2M4C2K3   A0A182YPP8   A0A2M4AXU2   A0A182R4G9   A0A182MHP3   A0A182QSF6   A0A1Q3FA62   A0A182FU30   A0A182PC51   B0WFU9   A0A1W4VCH0   A0A182HH22   A0A182V2T9   A0A182TVP3   A0A182XKR6   A0A182L4H6   Q7PZ40   B3MHG2   B4P448   B4N5W0   B4INL4   B3NRF3   A1Z9J6   T1GGZ1   B4QEW0   A0A0M3QV88   B4LJF2   Q95S87   Q16EW2   A0A023EF38   A0A023EGJ9   A0A1L8EDJ6   A0A0K8TSA9   A0A1I8Q463   A0A1A9UET3   A0A1A9Y4T7   T1PEG9   A0A1A9X4B4   A0A336MSH9   A0A158NQ23   A0A1B0GAK4   A0A1A9ZQU0   A0A1B0BXI8   A0A0L0C8J4   A0A3L8D5M5   A0A336N1B9   A0A195BI04   A0A1J1J7R1   Q28ZU0   A0A2R7WS45   A0A034V606   B4GGS8   B4JW19   R4WQ23   A0A0K8UIJ5   A0A154PI56   B4KTB6   A0A0P4VSC1   A0A2P8YJ52   A0A069DW19   C4WRT3   A0A0A1WJ11   V5GPK6   A0A195DEJ9   A0A0V0G661   A0A0A9XM32   A0A2S2P2R7   A0A195CUU5   A0A0C9RBM8   A0A023FA81   A0A1Y1K7F9   A0A088A9Y7   A0A1W4X276   N6U2P2   A0A1B6EMK7   A0A0M8ZRT3   A0A2A3EUA2   A0A1B6LTP7   N6UQE6   A0A1S3CYC2   A2I437   A0A224Y180   G1K078   A0A1B6JVT7   A0A0L7QIX0  

PDB

6NU3     E-value=5.62876e-09,     Score=139

KEGG

101736060    K17434 large subunit ribosomal protein L53 | (RefSeq) 39S ribosomal protein L53, mitochondrial

GO

GO:0005840   GO:0016021   GO:0035167   GO:0003735   GO:0032543   GO:0005762  

Length:

144

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000870000000000001

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.34421

outside

1  -  144

 

 

Pi

134.215734

Theta

125.320362

Tajima's D

-0.595756

CLR

0.96775

CSRT

0.218239088045598

Interpretation

Possibly Positive selection