SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02835  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003671
Annotation
PREDICTED:_proteasomal_ubiquitin_receptor_ADRM1_isoform_X2_[Papilio_machaon]
Location in the cell
Nuclear   Reliability : 4.161
 

Sequence

CDS
ATGTCTACTGCACTGTTTGGCAATACGTCTGGTCTTGGGGGAAGTTCAGGAGGAAACAAACACATAGTAGAATTTCGTGCTGGTCGTATGACGTTGAAAGGTCGTATGGTACATCCAGACAAAAGGAAGGGGCTCTTGTATGTTTACCAAGGAGAAGATTCTCTCATGCACTTTTGTTGGAAAGACCGAACTACGGGGGAGGTTGAGGATGACTTGCTTATATTTCCTGATGATTGTGAATTTACGCGTGTGAATGAATGCACCACAGGCCGAGTTTATGTACTCAAGTTCAAGTTGTTTTCGAAGAAGTGCTTCTTCTGGATGCAGGAGCCAAAGGCTGACAAGGATGAAGAATACTGTCGGCGCATTAATGAAGCATTAAACAATCCTCCTACATCTGGTGGGCGTGGAGGAAGCAGTAGTGGTGGGCAAGATCGTGAAATACGTAATTTACTCAACAATATGTCTCAACAACAGCTAATGCAATTATTTGGAGGTGTTGGTCCAGTGGGAGGAATTACTTCTCTCTTAGGAACAATGGGGAATAACAGCAGTAGCAGAACATCTGGCAGCAGCGCGTCTCGCAGTGGCAGCACTCCACGCAGCAGCACAGAGACACGTACACCTGCTCGCGCTCGTGACCTGCCAGCTGCGACACCCGCTCCCGCCGTTACCGCGCCCACACCTACTGCTGCAACCGCCACAACCACGGCCACAACGACTGCCACACCACCCAATACTGCCAATGCTCCTGCCCAGAATAGAAGCGGACAAATATTCCTGTCGGATCTGCAGCGTTACTTTTCCGAACTAGGCACAGCTCCGCCGGAAGGGAACGGTGCGTCAAGGACGGCCCCCGTAGCTGGTGCAGTCAATGTCGATCTGGGCAGCGTTCTGTCAGCTTCCGACGTAGTGTCTACTGCTTCGGCCCCGGAGAATGCCGTGCGACTGGCGCCACACCTGCCCGCCCAGGACGATGCCGCAAATCAGTTTTCTTCAGCGGTGGGTTCCGGACAGATGGGGCCAGTAATGTCACAATTCGGCTTACCGTCGGAAGTCTCATCTGCTGCAAATACGGGAAACATTGAAGCCGTCTTCAAGGCACTGGAAGACACTTCTTCTTCGTCAGGTACCACGACAAAAGAAGACGACAAAAAAAAGGATAAATCTAAAGACGATCAAAATAGTAAAAAAGATGATGATGCCGGAATGTCCCTTGATTAA
Protein
MSTALFGNTSGLGGSSGGNKHIVEFRAGRMTLKGRMVHPDKRKGLLYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVLKFKLFSKKCFFWMQEPKADKDEEYCRRINEALNNPPTSGGRGGSSSGGQDREIRNLLNNMSQQQLMQLFGGVGPVGGITSLLGTMGNNSSSRTSGSSASRSGSTPRSSTETRTPARARDLPAATPAPAVTAPTPTAATATTTATTTATPPNTANAPAQNRSGQIFLSDLQRYFSELGTAPPEGNGASRTAPVAGAVNVDLGSVLSASDVVSTASAPENAVRLAPHLPAQDDAANQFSSAVGSGQMGPVMSQFGLPSEVSSAANTGNIEAVFKALEDTSSSSGTTTKEDDKKKDKSKDDQNSKKDDDAGMSLD

Summary

Uniprot
Pfam
PF04683   Proteasom_Rpn13        + More
PF16550   RPN13_C
Interpro
IPR032368   RPN13_C        + More
IPR038633   Rpn13/ADRM1_sf       
IPR006773   Rpn13/ADRM1       
IPR038108   RPN13_C_sf       
Gene 3D
ProteinModelPortal
PDB
6OI4     E-value=2.68496e-44,     Score=450

Ontologies

Topology

Length:
407
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.36598
Exp number, first 60 AAs:
0.00215
Total prob of N-in:
0.01291
outside
1  -  407
 
 

Population Genetic Test Statistics

Pi
179.564149
Theta
144.47604
Tajima's D
-1.449018
CLR
1367.236984
CSRT
0.0683465826708665
Interpretation
Uncertain
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