Silkworm Genome Informatics Database

Gene

KWMTBOMO02826

Pre Gene Modal

BGIBMGA003679

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_uncharacterized_protein_LOC101737507_[Bombyx_mori]

Location

Bomo_Chr5(-):12139545-12147513 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.485

CDS

ATGAGCGAGTACAGATTCGCAGGTAGTGGGTACCCGCGTGTCGCGCCTACTACCCGTAGTGGAGGTTTGTGTTCAGCGGCGCTAGTGGGAGGCGCTTTGCTAGCTGCTGTTGCTGTGTTGGCCGTCGCAGCTCTAGCTTTTTACATGGGAGCTTTAAAACCAGATAGCGGAGAGCCAATCATAGCTTTTGAGGGCACATTACGAGTGACACGTGGAGATGTGTACGGCGGGGCGCCCGGTAGTCCGGCGTGGCGGGAGCGAGCCCGACGGTACAGTGCATCATTGCGACAAGTATTCTCGGGACCTTCACCCCTCCGTCAGGCCTTCACTGGGGCACTAGTGACAGGCTTCGGTGATCGACGACTTGATGTACATTTCAGACTGTATCTCGATAGAAGGAAAATACCAAGTTCTGTATCGAACGTGGAAGAAACCTTAAAAAATTTGATACTTCAGGACATCAACACAAAGAACTCAGCTTTTGGACAAATCAGGGTAGATCCGACAAGTATAGTGATCAAGCGGGATTTAGAACATACATATCAATCAGAGTCACATGTCAAAGAAGCTTTAAGTGAAAGCATGGAAACAAATCACCAAAAAACATTAACACCACAAAACAACCAAAGTAGCAAAGACAAAACTTTGCAATCTAGAGTGGGTGTCGTTCGTAAAACTACTGTAAAGCCTAATCAGACAACTAAGAAAACTGATCCGGATGAACCGGACATAGACACAGAGAACATACCAGTTGTACAAGGAACATTTCAAATCACGAAAACAGAGGCTGATATAACGGAAAATAAACACAGTTCTAGTCCGAGACATGAAGATAAACATAAGCCGGCAACAACTACAAAAGTGACTACAACAACTAAATCACCAACTACAAAACCGACTACAAGAACTACTACTAAAAGGCCAATTACGAGTACAGCAAAAACTAGGCCGTTCACAATAAAATCGACTCTTAACGTTAAACCAAGAACTGAGCCTTCACTAAGAAAAGACACGACTACAACTAAAATTAAAACAACGTCAACATCAACAACTTCGACATCAACAATGGGAACACCAACAACAACCACTAATGTATCACAAATTTTACTTGATCTTTTAACAAATGAAAACCACTATAAAGACTTGCCTAAAATTGATACACTATTTACTGTTCCACATGTTATCGATAATGAACCATGGAGACCAATAACCCAGCCCTATTTCGATTCTACCCCTAAGGCATCGCCAAAATTCGAAATTCCAGATGAACTTAACGCTGAGGATAGAATGGGAGTCGCTGAAGTCGTGGATGACGTTTCTATTCTGGAAAGTATGCTTACTCCAATTCCACCAGTTCAAAAAAGACTGACAACTACACGCCGCCCTGGATTATACAACGTTAATCCGGGCTTAGAAGCCGAGGTGTACGCCCCTAGTCCGGTTTATACCAGTTTTACCCTTCCCACTTTTGCTCCACCTTTAAAGAACATGGAAACCTTAGGATCAAAATACCCAAAACCACATCCTATACCTGTTGATAAAATCGGTAGCGTAGTTGAAGCAACAGCTGAACAAGACCCTAGCAAGATGGATGACGGTAAACCAGTTGAAAGACCACCTAAAGATAAAACAGCTTCGGCTGTCTTAAGTGTTTTACAGTTTGCTCAACAAGAAAATACAGAGAGAGTTTCCGTCGATGGTGCGTCTATCATAAAAAGAAATAATACTACTACATATCCTGTAACAACAACAGCCACCTCGACGACCAGGTCCTCTACTGCAAGCACTCCTAAGTCTACTTCAGAATCAATCACGTTTGTTACAAAAGTCGTCAACACTACTGTTACAACGACTGCCACAACTTTTGTAGATAAAAAACATCATGAAACTAAAGAAAATACAACGAAACGTCCTAATGACAAAGTATCAATGATACCCAGTACAACTGTTCCGCATCACACCTGGGAATTAGTCAACACTTCTACTAATGATAACGACACGTTTAGTAAAACTTCACCTGAAAAATATTATAATGATACTTTACAAGCTATAATAACGAAAAACGAAGCTGTATTTCCGAACACAACGCCAAAATTTTCCGGCAAGGTTTCACTATTAAAAAATTTAACAGATATTATTAAAAAGTATTCACAAATATCAACAACAGAAAATAGTACAAAATTGGAAGAAAGCGAAACTGAAGAGGAAGAGGAACTAGAATTTACTAAAATGAGGGGCTCTGTAGAAGTAGTACCGGATTATGAAATGGAAATTACTACTACTAATGTAATAACATTACTTCCTGCGAAATCTAATCTAGGCGTAAACAGACCATTGAGGCCAAGGCCTAAAATCAAACCCGAATTGAAAACTAACAAGGACAATTCACGTGGTTTTTTTCGTGAAAACATAGAACCACAAAAACTTGTTAGTAGTTTGAATGAAGAATATTACAAAGAAAATGAAAATTTAAATGATGATGGATCTGAATTCATTGATACTAAAAAAACTGAAAATAGTTATCCCACGGAATTAAATCATTTGACAGATTCAAAGAACCTTACAGGAATTATAGAAGCAATAGAAGCAGCTGAAAGTTCAACAAACAGCAACAGACTTCCTAAATCCAACGATGACATACATTTACCAGATGGAAACATAAATACTGATTTACCTGAAGGCACTTATAGGGTCTCTTACCATGTAACAGGCAGTGTCAGTAGTAAACAAGCCAATAAAACACAAAATCTACCTGCGTATGAATTGAAGTTGGAGCCAGACATAGTTCTGGAAATACCCGTAAATCAAACAAATTCTTTATCGGTCGAAAAATTAAAACAACTTGCTAATTTAGCTACAATTTCTGATTCCAACAATAATACTTTATTTCGTTCACCCGGAGGTGTGATCTCGACGAAAGCGATTCCTTCTAGCTACACATTAAACCAAGCTGGATTTCAAATATTGACGAAAACTTTCAACAAAGCTCAATCCACAAAACAAGATGAAAACAAACTTGGAAAACCGGACAAGGCTTTCGGCAAGCCTTCTAAGGATAATAACGTTTACTTTGTCAAGGAAGTAATTGAAGAAGAAGAATGTAATAATTTAACATCATTTCAATGCGTAAACGGTCCTTGCCTGCCGTTAACTTCACGTTGCAATCGATTGCTAGATTGCCCTCAAGGGGAAGACGAGAGATCATGTACTTGTGCAGACTATTTGAAGGCCGAGTACTCACAGTCTAAGATATGTGACGGCGTTGTTGATTGTTGGGATTATTCTGATGAAAATAAATGCGATTGGTGCAAAGAAGAACAATATGTTTGTGCTAATTCCCGTCAATGTATTGATATGATCAAAGTTTGTGATGGAACACCTGACTGTCCTCTAGGAGATGATGAGAAGAGTTGCGTTACGTTAGCGGACGAGCTAGAAAATAATGAAGTCATTCCGTACAACGAGGAAGGTTATGTCATGGTGCGGAAACGTGGCGTATGGGGTAGACTCTGTGTAGAAAGTTTTACCGATGTGGTTGAGCAGGCGCACAGCTCACTAAAATTGCCAGACCTCGGTCGGGCGGTGTGTCGAGCTATGACGTACAACGATGCGGGTTGGGCCCGCGAAGCTCGCGAGGGTCGCAAGGCGAGTCCGCACGGCTACTGGGAGGTGTGGCACAACGCGGGGGCCCGCGCAGCAGACACGCGGCTCACGTTCCGTCGGTCCGCATGCAAGCGACGGAAGGCATTGCGAGTACGCTGCACAGACTTAGACTGCGGAATACGACCACACGCTGATGCTCAGCAACCAAGGGATGTAACGGAATGGGTGCGCCGGAGCAGGGTGGTGGGAGGCGATGCAGCAGTAGCCGGCGCCTGGCCGTGGCAGGCGGCTCTCTACAGGGACGGCGACTTCCAATGTGGAGCCACTCTCATACACCCGCAGTGGTTACTCTCAGCCAGCCACTGTTTCTACCAGTTAGTATATATTTGGGAGTTGAAAATCTATAAAGATCGTTTTGAGACACAATTAAATCCAATAATGGATCATTCATTTTTTTACTTTTCGATAGTTTGA

Protein

MSEYRFAGSGYPRVAPTTRSGGLCSAALVGGALLAAVAVLAVAALAFYMGALKPDSGEPIIAFEGTLRVTRGDVYGGAPGSPAWRERARRYSASLRQVFSGPSPLRQAFTGALVTGFGDRRLDVHFRLYLDRRKIPSSVSNVEETLKNLILQDINTKNSAFGQIRVDPTSIVIKRDLEHTYQSESHVKEALSESMETNHQKTLTPQNNQSSKDKTLQSRVGVVRKTTVKPNQTTKKTDPDEPDIDTENIPVVQGTFQITKTEADITENKHSSSPRHEDKHKPATTTKVTTTTKSPTTKPTTRTTTKRPITSTAKTRPFTIKSTLNVKPRTEPSLRKDTTTTKIKTTSTSTTSTSTMGTPTTTTNVSQILLDLLTNENHYKDLPKIDTLFTVPHVIDNEPWRPITQPYFDSTPKASPKFEIPDELNAEDRMGVAEVVDDVSILESMLTPIPPVQKRLTTTRRPGLYNVNPGLEAEVYAPSPVYTSFTLPTFAPPLKNMETLGSKYPKPHPIPVDKIGSVVEATAEQDPSKMDDGKPVERPPKDKTASAVLSVLQFAQQENTERVSVDGASIIKRNNTTTYPVTTTATSTTRSSTASTPKSTSESITFVTKVVNTTVTTTATTFVDKKHHETKENTTKRPNDKVSMIPSTTVPHHTWELVNTSTNDNDTFSKTSPEKYYNDTLQAIITKNEAVFPNTTPKFSGKVSLLKNLTDIIKKYSQISTTENSTKLEESETEEEEELEFTKMRGSVEVVPDYEMEITTTNVITLLPAKSNLGVNRPLRPRPKIKPELKTNKDNSRGFFRENIEPQKLVSSLNEEYYKENENLNDDGSEFIDTKKTENSYPTELNHLTDSKNLTGIIEAIEAAESSTNSNRLPKSNDDIHLPDGNINTDLPEGTYRVSYHVTGSVSSKQANKTQNLPAYELKLEPDIVLEIPVNQTNSLSVEKLKQLANLATISDSNNNTLFRSPGGVISTKAIPSSYTLNQAGFQILTKTFNKAQSTKQDENKLGKPDKAFGKPSKDNNVYFVKEVIEEEECNNLTSFQCVNGPCLPLTSRCNRLLDCPQGEDERSCTCADYLKAEYSQSKICDGVVDCWDYSDENKCDWCKEEQYVCANSRQCIDMIKVCDGTPDCPLGDDEKSCVTLADELENNEVIPYNEEGYVMVRKRGVWGRLCVESFTDVVEQAHSSLKLPDLGRAVCRAMTYNDAGWAREAREGRKASPHGYWEVWHNAGARAADTRLTFRRSACKRRKALRVRCTDLDCGIRPHADAQQPRDVTEWVRRSRVVGGDAAVAGAWPWQAALYRDGDFQCGATLIHPQWLLSASHCFYQLVYIWELKIYKDRFETQLNPIMDHSFFYFSIV

Uniprot

A0A212F1W5

Pubmed

22118469

EMBL

AGBW02010786 OWR47730.1

Proteomes

UP000007151

Pfam

PF00057 Ldl_recept_a + More
PF00089 Trypsin

Interpro

IPR033116   TRYPSIN_SER        + More
IPR023415   LDLR_class-A_CS
IPR001254   Trypsin_dom
IPR018114   TRYPSIN_HIS
IPR009003   Peptidase_S1_PA
IPR036055   LDL_receptor-like_sf
IPR002172   LDrepeatLR_classA_rpt

SUPFAM

SSF50494 SSF50494 + More
SSF57424 SSF57424

Gene 3D

4.10.400.10

CDD

cd00190 Tryp_SPc
cd00112 LDLa

ProteinModelPortal

A0A212F1W5

PDB

4ZRQ E-value=6.82192e-09, Score=150

KEGG

101737507 no KO assigned | (RefSeq) uncharacterized LOC101737507

GO

GO:0004252 GO:0016021 GO:0006508 GO:0005515 GO:0005044 GO:0016020 GO:0030286 GO:0005216 GO:0045211 GO:0006281 GO:0048384

Length:

1358

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

23.89094

Exp number, first 60 AAs:

23.73127

Total prob of N-in:

0.99928

POSSIBLE N-term signal

sequence

inside

1 - 20

TMhelix

21 - 43

outside

44 - 1358

Pi

188.609075

Theta

163.520524

Tajima's D

0.470117

CLR

0.362783

CSRT

0.500874956252187

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics