SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02822
Annotation
THAP_domain-containing_protein_9_[Crassostrea_gigas]
Location in the cell
Nuclear   Reliability : 2.916
 

Sequence

CDS
ATGAAACCAGTTTCTGAAGAAACAAAAAGTAGAGAACAAAGGTTACAAACTCGTAACCTTAAAAAACAGCTTTTTAGCCTGCCCAACACTTCCCAATACTATGAAGATATAGTACCCCTTGAAGAACACAGCAATGTGCATTTTGATTCAAATGTCTCTCAAGAAATTCTAATAGAAAATAATAACTCTAGTATAGATGAAACAATTACAAGGCATCATATTACTATTGGAACTCAAACATCCAATATATTAAAATTGTTCTCTACAGAGCTATTACTTGCAGACGATGAGACAGTGCAATACTACACCGGGTTGGAAACAGCATCTAAGTTTTCATTAGTTTTAATCACACTTTTGCCAATGTCAAATGATATAAGGTATCGCTGGAGTAGAGTGGTCGGCATATCAATAGAAGATCAATTTTTAATGTTACTAATTAAGCTTAGAAGAAACAACAGATTTTGA
Protein
MKPVSEETKSREQRLQTRNLKKQLFSLPNTSQYYEDIVPLEEHSNVHFDSNVSQEILIENNNSSIDETITRHHITIGTQTSNILKLFSTELLLADDETVQYYTGLETASKFSLVLITLLPMSNDIRYRWSRVVGISIEDQFLMLLIKLRRNNRF

Summary

Uniprot
Pfam
PF13613   HTH_Tnp_4        + More
PF13359   DDE_Tnp_4
PF05485   THAP
Interpro
IPR006612   THAP_Znf        + More
IPR027805   Transposase_HTH_dom       
IPR038441   THAP_Znf_sf       
IPR027806   HARBI1_dom       
Gene 3D
ProteinModelPortal

Ontologies

Topology

Length:
154
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.37804
Exp number, first 60 AAs:
0
Total prob of N-in:
0.35333
outside
1  -  154
 
 

Population Genetic Test Statistics

Pi
289.799987
Theta
220.002222
Tajima's D
0.988023
CLR
0.156492
CSRT
0.660216989150542
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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