Gene

KWMTBOMO02815  Validated by peptides from experiments

Annotation

Mitochondrial_28S_ribosomal_protein_S28_[Operophtera_brumata]

Location

Bomo_Chr5(+):11905764-11907468      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.195 Nuclear   Reliability : 1.554

CDS

ATGGATTTGGGGGATCCAGTGGGAAAAACCGTAATAGGAAAAATATTTCATGTTGTAGAAGACGACTTATATATAGATTTTGGATGGAAATTTCATTGTGTTTGTACAAGACCAAATTTGAGAGGTGAAGAATACGTCAGGGGCACTAGAGTTCGGATACAAATTAATGATTTAGAATTATCATCTCGTTTCTTAGGATCGAGCACAGATCTTACACTTTTAGAGGCAGACTGTAAATTACTTGGTATTATATCTACTCCCACTAAACCAGCTGTAAGTGTTAATTAA

Protein

MDLGDPVGKTVIGKIFHVVEDDLYIDFGWKFHCVCTRPNLRGEEYVRGTRVRIQINDLELSSRFLGSSTDLTLLEADCKLLGIISTPTKPAVSVN

Uniprot

A0A0L7LPR1   A0A2H1V2B3   A0A194PQB8   A0A212F1V2   A0A2A4JTN3   A0A1E1WTJ2   + More
A0A1E1WM93   B0WEG4   A0A2M4AR20   A0A2M4ARI9   A0A2M4AR35   A0A2M4C0E3   A0A182K1S8   A0A2M4C0J4   A0A2M4C0G1   A0A2M4C0T4   A0A2M3ZKL1   W5JB38   A0A2M3ZC03   A0A182FDB6   A0A182MKK3   A0A2M3ZJF8   A0A023EJ77   Q7Q544   A0A182X4N0   A0A182TWA5   A0A182LK89   A0A182I4M8   A0A182G4S7   A0A1L8E0C7   A0A182VEP8   A0A1Q3FBR2   A0A182WBM0   A0A182QID6   A0A182RDK2   A0A182PDJ9   A0A1A9ZXI1   Q28ZM9   A0A1I8MLK2   B4GH17   A0A182NI60   A0A1L8E060   B4KSU1   A0A0L0BMN8   A0A1B0C3R8   B4LM24   W8BR70   A0A1A9XPI7   A0A034WWW8   A0A3B0JPM1   A0A0K8UG64   A0A1A9X4S2   A0A1I8Q9W5   Q17EN8   A0A1A9V256   Q6XHU9   A0A1B6GDH8   B3NMU9   A0A1B6HU85   A0A2P8ZNF1   A0A0M4EGX5   A0A1B0D663   B4P4C4   A0A1W4VPS0   A0A2J7QJ93   A0A158NB29   A0A151I1X7   B4QCZ6   B3MDF3   F4W3U1   B4J524   E9IZX7   A0A1B6MTC5   A0A151IQB1   F4WCW5   A0A0J7KA33   A0A026X192   A1ZBA5   A0A3L8DL47   A0A1W4WTA4   A0A151WZS3   B4MRC3   N6T0A9   A0A195DZI6   E2A4L1   J3JW93   A0A1Y1KWY7   A0A067QHQ0   A0A0N7Z8F2   Q8SX15   A0A195EWN7   T1HTI9   A0A146MCZ8   A0A0K8R9B8   A0A0K8SFQ7   A0A0A9VYH0   A0A2R7WBL2   E2C6B5   A0A1B6DPT8   A0A0C9RHD1  

Pubmed

26227816    26354079    22118469    20920257    23761445    24945155    + More
12364791    14747013    17210077    20966253    26483478    15632085    17994087    25315136    18057021    26108605    24495485    25348373    17510324    14525923    29403074    17550304    21347285    22936249    21719571    21282665    24508170    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    30249741    23537049    20798317    22516182    28004739    24845553    27129103    26823975    25401762   

EMBL

JTDY01000393    KOB77389.1    ODYU01000355    SOQ34980.1    KQ459597    KPI94934.1    + More
AGBW02010786    OWR47718.1    NWSH01000604    PCG75371.1    GDQN01000898    JAT90156.1    GDQN01002986    JAT88068.1    DS231909    EDS45624.1    GGFK01009915    MBW43236.1    GGFK01009897    MBW43218.1    GGFK01009861    MBW43182.1    GGFJ01009649    MBW58790.1    GGFJ01009651    MBW58792.1    GGFJ01009652    MBW58793.1    GGFJ01009650    MBW58791.1    GGFM01008284    MBW29035.1    ADMH02001892    ETN60623.1    GGFM01005227    MBW25978.1    AXCM01003043    GGFM01007966    MBW28717.1    GAPW01004613    JAC08985.1    AAAB01008960    EAA10773.3    APCN01002331    JXUM01042784    KQ561338    KXJ78921.1    GFDF01001906    JAV12178.1    GFDL01010058    JAV24987.1    AXCN02000395    CM000071    EAL25584.1    CH479183    EDW35787.1    GFDF01001936    JAV12148.1    CH933808    EDW08438.1    KRG04129.1    JRES01001648    KNC21198.1    JXJN01025096    CH940648    EDW59944.1    GAMC01007227    JAB99328.1    GAKP01000679    JAC58273.1    OUUW01000001    SPP75579.1    GDHF01026647    JAI25667.1    CH477280    EAT44955.1    AY232084    AAR10107.1    GECZ01009298    JAS60471.1    CH954179    EDV55103.1    GECU01029469    JAS78237.1    PYGN01000010    PSN58041.1    CP012524    ALC41735.1    AJVK01025773    CM000158    EDW91610.1    NEVH01013559    PNF28661.1    ADTU01010783    KQ976572    KYM80410.1    CM000362    CM002911    EDX07701.1    KMY94886.1    CH902619    EDV36401.1    GL887446    EGI71132.1    CH916367    EDW01730.1    GL767291    EFZ13822.1    GEBQ01000832    JAT39145.1    KQ976782    KYN08310.1    GL888074    EGI67946.1    LBMM01010899    KMQ87167.1    KK107039    EZA61863.1    AE013599    BT044321    AAF57671.2    ACH92386.1    QOIP01000006    RLU21165.1    KQ982630    KYQ53398.1    CH963850    EDW74662.2    APGK01057485    KB741280    KB632033    ENN70943.1    ERL88185.1    KQ980050    KYN18039.1    GL436710    EFN71613.1    BT127511    AEE62473.1    GEZM01071357    GEZM01071356    JAV65872.1    KK853606    KDR06171.1    GDKW01003515    JAI53080.1    AY094907    AAM11260.1    KQ981953    KYN32312.1    ACPB03017753    GDHC01002013    JAQ16616.1    GADI01006152    JAA67656.1    GBRD01014226    JAG51600.1    GBHO01043373    JAG00231.1    KK854582    PTY17084.1    GL453058    EFN76514.1    GEDC01009593    JAS27705.1    GBYB01012612    JAG82379.1   

Proteomes

UP000037510    UP000053268    UP000007151    UP000218220    UP000002320    UP000075881    + More
UP000000673    UP000069272    UP000075883    UP000007062    UP000076407    UP000075902    UP000075882    UP000075840    UP000069940    UP000249989    UP000075903    UP000075920    UP000075886    UP000075900    UP000075885    UP000092445    UP000001819    UP000095301    UP000008744    UP000075884    UP000009192    UP000037069    UP000092460    UP000008792    UP000092443    UP000268350    UP000091820    UP000095300    UP000008820    UP000078200    UP000008711    UP000245037    UP000092553    UP000092462    UP000002282    UP000192221    UP000235965    UP000005205    UP000078540    UP000000304    UP000007801    UP000007755    UP000001070    UP000078542    UP000036403    UP000053097    UP000000803    UP000279307    UP000192223    UP000075809    UP000007798    UP000019118    UP000030742    UP000078492    UP000000311    UP000027135    UP000078541    UP000015103    UP000008237   

PRIDE

A1ZBA5    Q8SX15   

Pfam

PF10246   MRP-S35

Interpro

IPR019375   Ribosomal_S28_mit       

ProteinModelPortal

A0A0L7LPR1   A0A2H1V2B3   A0A194PQB8   A0A212F1V2   A0A2A4JTN3   A0A1E1WTJ2   + More
A0A1E1WM93   B0WEG4   A0A2M4AR20   A0A2M4ARI9   A0A2M4AR35   A0A2M4C0E3   A0A182K1S8   A0A2M4C0J4   A0A2M4C0G1   A0A2M4C0T4   A0A2M3ZKL1   W5JB38   A0A2M3ZC03   A0A182FDB6   A0A182MKK3   A0A2M3ZJF8   A0A023EJ77   Q7Q544   A0A182X4N0   A0A182TWA5   A0A182LK89   A0A182I4M8   A0A182G4S7   A0A1L8E0C7   A0A182VEP8   A0A1Q3FBR2   A0A182WBM0   A0A182QID6   A0A182RDK2   A0A182PDJ9   A0A1A9ZXI1   Q28ZM9   A0A1I8MLK2   B4GH17   A0A182NI60   A0A1L8E060   B4KSU1   A0A0L0BMN8   A0A1B0C3R8   B4LM24   W8BR70   A0A1A9XPI7   A0A034WWW8   A0A3B0JPM1   A0A0K8UG64   A0A1A9X4S2   A0A1I8Q9W5   Q17EN8   A0A1A9V256   Q6XHU9   A0A1B6GDH8   B3NMU9   A0A1B6HU85   A0A2P8ZNF1   A0A0M4EGX5   A0A1B0D663   B4P4C4   A0A1W4VPS0   A0A2J7QJ93   A0A158NB29   A0A151I1X7   B4QCZ6   B3MDF3   F4W3U1   B4J524   E9IZX7   A0A1B6MTC5   A0A151IQB1   F4WCW5   A0A0J7KA33   A0A026X192   A1ZBA5   A0A3L8DL47   A0A1W4WTA4   A0A151WZS3   B4MRC3   N6T0A9   A0A195DZI6   E2A4L1   J3JW93   A0A1Y1KWY7   A0A067QHQ0   A0A0N7Z8F2   Q8SX15   A0A195EWN7   T1HTI9   A0A146MCZ8   A0A0K8R9B8   A0A0K8SFQ7   A0A0A9VYH0   A0A2R7WBL2   E2C6B5   A0A1B6DPT8   A0A0C9RHD1  

PDB

6GAZ     E-value=6.92439e-28,     Score=301

KEGG

101739277    K17407 small subunit ribosomal protein S28 | (RefSeq) 28S ribosomal protein S28, mitochondrial

GO

GO:0005840   GO:0005763   GO:0032543   GO:0006412   GO:0003735  

PANTHER

PTHR13447  

Length:

95

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00163

Exp number, first 60 AAs:

0.00114

Total prob of N-in:

0.13258

outside

1  -  95

 

 

Pi

182.366804

Theta

154.379281

Tajima's D

0.701402

CLR

0

CSRT

0.574121293935303

Interpretation

Uncertain