Silkworm Genome Informatics Database

Gene

KWMTBOMO02814 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003685

Annotation

Upf3_regulator_of_nonsense_transcripts-like_protein_B_[Bombyx_mori]

Location

Bomo_Chr5(-):11891824-11896323 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.717

CDS

ATGACTGAGGATCAAGATGGTAAAGACTCACAGTCAGATTCGGGTTCCAAGACATTCATCAACAAGAGCAAGGACAAGAAATCTAAGATACATCGTCCGTTGACAAAAATAATTCTTCGACGTTTACCGCCCACGATGACTGAGGAAACGTTTTTGGAGCAAGTATCGCCTATTCCAGAGCATGACTATTTTTATTTTGCCAAACCGGACCCGACTTTGGGCAATAACCTATTTTCTAGAGCGTATATCAATTTCGTTAACGTGGAAGATATTTTTCTGTTCCGAGATAAATTTGACGGTTATGTTTTCTTAGATGAAAAAGGTGGAGAATATGTAGGCATAGTTGAATATGCACCCTTCCAAAGAATTTCAAAGAAAAAAAAGAAGAAAGATCCTAAATGTGGAACACTTGAGAGTGACCCAATTTATCAAGAGTTTATCGAGAGTCTGAACAAAGATCCTGAGGTTGAGAGCCAACCTAAACTAGAATATTCTTACCCAATAAATGATGTTAGTGAAAAAAAAACACAATCAACACCTTTGCTGGAATATCTAGCCGCACGTAAACTAGACAAGAGAGGTAGAGATGAACGTCGTAGGCGCGATAATGACAAGAGAAAAATGAGAATTGAACGAAAAACAAAGGAAGGTCCTATCAAGGAAGAAGATAATGAGGATACAGAAGTAAGAAAAATTAAAACCAGAGAATCTGAGAAAGAGAAGAAAGATTCTAAAGAAGATCAAACAAAACTGGACGACGGGATGGTATTCGAATCTAAATCATACAAAGAACGTAAACCTAATTTAAAAATTGATAAAAAGAAGAAATCTGAAAACGATAGAATTGAAAAAGAGGACGAAGTAGGAGATGATCTTGATGGGCAGAAAAAGGATAAACGCGAAAAAAATAAGATACAAGAATCTCCACGTGAGCAAAAGAGTAAAAAATACAGCGACACTAGGAAAGAGAGAATCAAACAAAATGTTTTAATTACAAAATCTGAAAAAGAGTATGCTCTTTCGAAGCTCATATCTCTATGTCCCAAAAGTACTGCACTCAGTAATGATATTAAACCATTCACTCAACTGCCTCAAGTGAAAACTGATGACTTATCCAAGATTATTGATGGAATGGATAAAAAAACAAAGCTTGAAGCAAAAGAAGAAACGACACGAAACTCAAAAGATTCAGACAAAGTTGAGACTAAGAGTAATGTACGCAGAAATAGCCTTGACTCAAATAAAGCCACAAGCAATGATGAATCTGATTCAAAGAAAACAACCTTCGAAGAAAGACCAAAATCTTCGGAACGTGAAGGATCGGAAGAGAAAGAAAAATGTGACGGCGAACGTCGCGCTGAACGCAGAATAAGAAATAAGGATCGGCCCAGTCTCGTGATTTACCAGCCCGGCATGGGGAAGTTTAGTAAACAGCGTCTCGCGAAAGAAAAGGAAACGCTCCCGACGAAAGTGAGCGACAGTGAAAAGAAAGACACTTGA

Protein

MTEDQDGKDSQSDSGSKTFINKSKDKKSKIHRPLTKIILRRLPPTMTEETFLEQVSPIPEHDYFYFAKPDPTLGNNLFSRAYINFVNVEDIFLFRDKFDGYVFLDEKGGEYVGIVEYAPFQRISKKKKKKDPKCGTLESDPIYQEFIESLNKDPEVESQPKLEYSYPINDVSEKKTQSTPLLEYLAARKLDKRGRDERRRRDNDKRKMRIERKTKEGPIKEEDNEDTEVRKIKTRESEKEKKDSKEDQTKLDDGMVFESKSYKERKPNLKIDKKKKSENDRIEKEDEVGDDLDGQKKDKREKNKIQESPREQKSKKYSDTRKERIKQNVLITKSEKEYALSKLISLCPKSTALSNDIKPFTQLPQVKTDDLSKIIDGMDKKTKLEAKEETTRNSKDSDKVETKSNVRRNSLDSNKATSNDESDSKKTTFEERPKSSEREGSEEKEKCDGERRAERRIRNKDRPSLVIYQPGMGKFSKQRLAKEKETLPTKVSDSEKKDT

Uniprot

H9J2E8 Q2F5U6 A0A2A4JVD3 A0A0L7LPN2

Pubmed

19121390 26227816

EMBL

BABH01007786 DQ311327 ABD36271.1 NWSH01000604 PCG75370.1 JTDY01000393 + More
KOB77392.1

Proteomes

UP000005204 UP000218220 UP000037510

PRIDE

H9J2E8 Q2F5U6

Pfam

PF03467 Smg4_UPF3

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR005120   UPF3_dom
IPR035979   RBD_domain_sf
IPR039722   Upf3

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9J2E8 Q2F5U6 A0A2A4JVD3 A0A0L7LPN2

PDB

1UW4 E-value=1.27696e-25, Score=290

KEGG

693102 K14328 regulator of nonsense transcripts 3 | (RefSeq) Upf3 regulator of nonsense transcripts-like pr

PATHWAY

03013 RNA transport - Bombyx mori (domestic silkworm)
03015 mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0003676 GO:0000184 GO:0000166 GO:0008270 GO:0006260 GO:0003777 GO:0007018 GO:0030286 GO:0005216 GO:0045211 GO:0006281 GO:0048384

PANTHER

PTHR13112

Length:

499

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00749999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00582

outside

1 - 499

Pi

227.513275

Theta

179.00393

Tajima's D

1.029297

CLR

0

CSRT

0.668666566671666

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics