Gene

KWMTBOMO02809

Annotation

reverse_transcriptase_[Anopheles_gambiae]

Location

Bomo_Chr5(-):11838464-11840993      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.466

CDS

ATGGTCACATTCTGGCGCAACTTGTGGTCAAGACCTGTGGAGCATGTGGAGGGCTCCTGGATGCAGGTCATTGAGGACTCGTGTGCGGGCATACCACCGATGAGCCCGGTTACTATCAGCAAAGGTGATATTAAGGCTGCAGTCTGTAGTTCTTCACACTGGAAGTCTCCAGGCTGCGACGGACTGCAGCTTTACTGGCTAAAAAGTTTCCGGGCTTGTCACGAAACCCTCGCCAGACAGTTCCAGGAAGCCCTAGATACAAAAGTGCTCCCCGCCTTCCTCACTACTGGGATCACTCACCTCATTCCAAAATCGGAAAGTACCGCGGATCCGGCACAGTACCGGCCAATAACGTGTCTTCCTACCACCTATAAGACACTGACATCCGTTCTGGAAACTAAGATCTCACACCACATAGACAGCTGTCGAGTACTGTCTGGTGCCCAGAACGGGTGTAGGCGTGGTAGCCGCGGTACTAAGGAACTCCTCTTGATCGACGCGGTAGCTGGCCAGCAGGTCAAACGCAACCGACGAAATTTCTCTGCCGCCTGGATAGATTATAAAAAGGCATTTGACTCGGTCCCCCATACATGGCTGAAGAGGGTCCTCGAGCTGTATAAGATAGACGATACAGTTCGAGACTTCCTCGGTGCCTGTATGGGGCAATGGAGTACAATGCTTAGTCTATCCGGTGTGCGGCTGTCGGCTGTAGAAGACCGAATAAAGGTGAATCGGGGTATATTTCAGGGTGATTGTCTGAGTCCATTGTGGTTTTGCCTGGCCCTGAATCCTCTCAGTTCATTACTGGAGGCTTCGAGGACAGGCTTTCAGTTCCGAAGGGGGGGCTTGAAGGTGTCCCACTTGTTCTACATGGATGACCTCAAGTTGTACGCTCCTCATGCTGCAGGCCTCAGGCGACTGCTTGACATCACTTGTGATTTCAGTAGTCGCATTAGGATGAGGCTGGGAGTCGACAAGTGTGCGGTTCTCCATGTAGAGAGAGGGAGCATAGTCTCATCGGATCGTTTACCTGTATCCGATGGGATAAACCTTCGGGCACTCTCCGAGGGAGAAACATACCGGTACCTGGGCATGTCGCAAAATTTAGGTATTGACGTGGCGGTCGTCAAACAAGCTGCATGCGACGTGTTTTATGAACGTTTGACAAAAGTGTGTAAGAGCCTTTTGTCGGGCGTGAATAAGACAAGGGCGTTTAACGGCTGGGCGATGCCCGTCCTGTTGTATACCTTCGGCGTGCTCAGGTGGACTCAGACCGAACTGGATGCCCTGGATAGAAAAGTCCGCTCAATTATGACCCTCCATAGGATGCTCCACCCGAAGTCCTCGGTAATGAGATTGTACATTCCGCGGAAGTGTGGTGGCCGGGGCCTACTTAGTGCCAAGGTCATGCACAACAGTGGGGTGTGCAGTCTCAGGGAATATTTCCTATCGAGGGCTGACAGTGTGATGCACAGAGAGGTCATGGAATGCGACAAAGGACTGACCCCGCTAGCCCTGGCCAGAGACGGGTGGCAATCACCGGCGGTACTCAGTACCTCTGACCGTGAGGCCATATGGAAAGGGAAAGAGCTGCACGGACGCTTCTTTCAGGCACTGCATGAGCCCCACGTGGACAAAGAAGCCTCCGTGCACTGGCTGCGATTCGGTGACCTCTTTGGGGAAACCGAGGGTTTTGTCTGTGCAATACAGGATCAGGTTATCAGGACGAACAACTATAGGAAGCACATTCTGAGGGATGGGACAGCTGACATCTGTCGATTATGCCGCCGACCGGGTGAATCCCTCAGACATGTCACCTCTGGTTGTTCTATGCTTGCTAACACTGAGTACTTGCACAGACATAACCAAGCAGCCAGAATCCTCCACCAAGAGCTCGCCCTTAAGTATGGCCTCATCGAACAGAGGCTACCGTATTATAAGTACCAGCCGGACGCTGTACTCGAAAACGACCGTGCCAAGCTCTACTGGGACCGGCCCATCATTACGGACAGGACTATTCTTGCGAATAAGCCTGATATCGTGCTGATGGACCGGACGGAGTCTCGGGTATTTCTGGTGGATATCACCATCCCCTACGACGAGAACCTCGTGCGGGCCGAGGCAGATAAAAAGACCAAATATTTGGACCTGGCGCACGAGGTGACCGACATGTGGAGGGTGGTATCTACAGAAATAATCCCGGTAGTTGTGTCGGTGAATGGTTTGGTCCCTAAAAGCCTCTCAAAACATCTCGAGAGGCTTGGTCTCAACAAAAAGTCGGTGGTGGCCCAAATGCAAAAGGCAGTCTTGCTCGATAATGCCCGTATAGTTCGCCGGTTTCTCTCCCAATAG

Protein

MVTFWRNLWSRPVEHVEGSWMQVIEDSCAGIPPMSPVTISKGDIKAAVCSSSHWKSPGCDGLQLYWLKSFRACHETLARQFQEALDTKVLPAFLTTGITHLIPKSESTADPAQYRPITCLPTTYKTLTSVLETKISHHIDSCRVLSGAQNGCRRGSRGTKELLLIDAVAGQQVKRNRRNFSAAWIDYKKAFDSVPHTWLKRVLELYKIDDTVRDFLGACMGQWSTMLSLSGVRLSAVEDRIKVNRGIFQGDCLSPLWFCLALNPLSSLLEASRTGFQFRRGGLKVSHLFYMDDLKLYAPHAAGLRRLLDITCDFSSRIRMRLGVDKCAVLHVERGSIVSSDRLPVSDGINLRALSEGETYRYLGMSQNLGIDVAVVKQAACDVFYERLTKVCKSLLSGVNKTRAFNGWAMPVLLYTFGVLRWTQTELDALDRKVRSIMTLHRMLHPKSSVMRLYIPRKCGGRGLLSAKVMHNSGVCSLREYFLSRADSVMHREVMECDKGLTPLALARDGWQSPAVLSTSDREAIWKGKELHGRFFQALHEPHVDKEASVHWLRFGDLFGETEGFVCAIQDQVIRTNNYRKHILRDGTADICRLCRRPGESLRHVTSGCSMLANTEYLHRHNQAARILHQELALKYGLIEQRLPYYKYQPDAVLENDRAKLYWDRPIITDRTILANKPDIVLMDRTESRVFLVDITIPYDENLVRAEADKKTKYLDLAHEVTDMWRVVSTEIIPVVVSVNGLVPKSLSKHLERLGLNKKSVVAQMQKAVLLDNARIVRRFLSQ

Uniprot

A0A1S4EQ35   W8BF34   Q76IN5   W8AXW6   D7GYL6   A0A2J7PDQ6   + More
A0A2J7PIT9   E0VPJ4   E0VSD9   E0W0M4   E0W0H3   E0VPK6   E0VA19   A0A3B3I0I7   H3AB60   A0A3P9MNJ5   A0A3B3HW39   A0A3P9MMW4   A0A3P9LVD0   A0A3P8NVY4   A0A3P8NT65   A0A3B3H9G8   A0A3P9K6Z6   A0A3B3HU40   A0A3P8NFL6   A0A3B3ILW9   A0A3P8P1Q8   A0A3P8QC13   A0A3P8PQZ9   A0A3P8PU69   A0A3B3HQX9   A0A3P8R5E8   A0A3P9M4C8   A0A3P8QAR5   A0A3P8Q3U1   A0A3B3I5C9   A0A3P8NKM6   A0A3P8PU63   A0A3P8PST2   A0A3B3H8G1   A0A3P8QTM2   A0A3P8QPZ9   A0A3P8PSV9   A0A3B3HNT5   A0A3P8Q816   A0A3P8NRB8   A0A3P8QK92   A0A3P8QRC6   A0A3P8P1I6   A0A3P8PUT7   A0A3P9DUW1   A0A3P8P8J8   A0A3P8P9Q9   A0A3P8Q8N4   A0A3P8PIV2   A0A3P8NH43   A0A3P8NLS5   A0A3P8QJR1   A0A3B3HQ99   A0A3P9QFG6   A0A3B5PPD0   H3BBL0   A0A3P8QRQ3   A0A0S7ESG3   A0A3B3H9C1   A0A2P2HZD8   H3AYE9   A0A3P8RI52   H3B0S5   A0A3P8Q6B2   A0A3P9LCQ1   A0A1X7SMI5   H3A710   A0A3Q0J2S4   H3A541   H3AWP0  

Pubmed

24495485    12949131    18362917    19820115    20566863    17554307    + More
9215903    25186727    23542700   

EMBL

GAMC01018221    JAB88334.1    AB097127    BAC82595.1    GAMC01016897    JAB89658.1    + More
GG695857    EFA13462.1    NEVH01026385    PNF14463.1    NEVH01024955    PNF16260.1    DS235366    EEB15300.1    DS235750    EEB16295.1    DS235861    EEB19180.1    DS235859    EEB19129.1    EEB15312.1    DS235004    EEB10225.1    AFYH01227415    AFYH01052121    GBYX01473740    JAO07919.1    IACF01001441    LAB67141.1    AFYH01132769    AFYH01092381    AFYH01092382    AFYH01245796    AFYH01248595    AFYH01142702    AFYH01142703   

Proteomes

UP000079169    UP000007266    UP000235965    UP000009046    UP000001038    UP000008672    + More
UP000265180    UP000265100    UP000265160    UP000242638    UP000002852    UP000007879   

Pfam

PF00078   RVT_1

Interpro

IPR000477   RT_dom        + More
IPR001611   Leu-rich_rpt       

ProteinModelPortal

A0A1S4EQ35   W8BF34   Q76IN5   W8AXW6   D7GYL6   A0A2J7PDQ6   + More
A0A2J7PIT9   E0VPJ4   E0VSD9   E0W0M4   E0W0H3   E0VPK6   E0VA19   A0A3B3I0I7   H3AB60   A0A3P9MNJ5   A0A3B3HW39   A0A3P9MMW4   A0A3P9LVD0   A0A3P8NVY4   A0A3P8NT65   A0A3B3H9G8   A0A3P9K6Z6   A0A3B3HU40   A0A3P8NFL6   A0A3B3ILW9   A0A3P8P1Q8   A0A3P8QC13   A0A3P8PQZ9   A0A3P8PU69   A0A3B3HQX9   A0A3P8R5E8   A0A3P9M4C8   A0A3P8QAR5   A0A3P8Q3U1   A0A3B3I5C9   A0A3P8NKM6   A0A3P8PU63   A0A3P8PST2   A0A3B3H8G1   A0A3P8QTM2   A0A3P8QPZ9   A0A3P8PSV9   A0A3B3HNT5   A0A3P8Q816   A0A3P8NRB8   A0A3P8QK92   A0A3P8QRC6   A0A3P8P1I6   A0A3P8PUT7   A0A3P9DUW1   A0A3P8P8J8   A0A3P8P9Q9   A0A3P8Q8N4   A0A3P8PIV2   A0A3P8NH43   A0A3P8NLS5   A0A3P8QJR1   A0A3B3HQ99   A0A3P9QFG6   A0A3B5PPD0   H3BBL0   A0A3P8QRQ3   A0A0S7ESG3   A0A3B3H9C1   A0A2P2HZD8   H3AYE9   A0A3P8RI52   H3B0S5   A0A3P8Q6B2   A0A3P9LCQ1   A0A1X7SMI5   H3A710   A0A3Q0J2S4   H3A541   H3AWP0  

KEGG

101742326    no KO assigned | (RefSeq) zinc finger and BTB domain-containing protein 41-like

GO

GO:0003964   GO:0016021  

Length:

783

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0910499999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00198

outside

1  -  783

 

 

Pi

180.837654

Theta

72.374744

Tajima's D

4.143026

CLR

0.453829

CSRT

0.99930003499825

Interpretation

Uncertain