Gene

KWMTBOMO02805  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003507

Annotation

PREDICTED:_poly(U)-specific_endoribonuclease-D_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):11770888-11777106      View in EpiBrowser

Full name

Poly(U)-specific endoribonuclease homolog      

Alternative Name

Protein endoU
Uridylate-specific endoribonuclease homolog

Location in the cell

Mitochondrial   Reliability : 1.378 Nuclear   Reliability : 1.06

CDS

ATGACACTGAGTGAAGAACTTCTTCGGAAAGATACAAACAATGCTGCCAAATATATCACGATGGACTTTCAAGAAAAAACGACATCACAGTCGAAAGAAGACAAAGCCCCGTTGCCGCTGCTAAATATATCATCAGCGGCATGGAATATTCCAACAATAGAAAAAATTGTCCCACTCTTGGACAATTACGAAAGAAGCACGTTAGTAAATGAACATGTAACGCCACAGGAACGAAACGAGGAAAATGCGTTTATGGACGCCATCATGGCCACAAGTGTTATGAGGCATTTAATGAATTTTTTGAAAGAAAAAGGTTATGTCACACCGGATCCTAGACAACAAAGAGATTTTGTAAAGCAGCTCTGGTTTAGTTTGTACTCGAGGGGAAAAGGAAAAATCAGTAGTTCAGGATTTGAACATATATTTGTATCTGAATTAAAAAATGGCGAAGTTTCTGGTCTACATAATTGGATTTATTTTTCAAAGGAAGAAGCAGCGAACCGACTGAATTACTTAGGTTACTTGAAATACAGACAATTTGGGGAGCGTGGAGCAGTGATTAAATTCCACTTCACCCAACAAGGAGTGGACAAGCCGGTTAACTCTATGTTCATTGGTACATCACCTGAGTTGGAAATGGCATTGTATACTTTGTGCTTCGTGACTCGTGCTGACAGCGAGTGTAACCTGAAACTGTCCAACAACGATGTCAGTATCATGACTCACACTTTCCGTTACAGGAGTAAAAATCTAATCGGTAGTGGCTATCCACAGATCTAA

Protein

MTLSEELLRKDTNNAAKYITMDFQEKTTSQSKEDKAPLPLLNISSAAWNIPTIEKIVPLLDNYERSTLVNEHVTPQERNEENAFMDAIMATSVMRHLMNFLKEKGYVTPDPRQQRDFVKQLWFSLYSRGKGKISSSGFEHIFVSELKNGEVSGLHNWIYFSKEEAANRLNYLGYLKYRQFGERGAVIKFHFTQQGVDKPVNSMFIGTSPELEMALYTLCFVTRADSECNLKLSNNDVSIMTHTFRYRSKNLIGSGYPQI

Description

Endoribonuclease.

Cofactor

Mn(2+)

Subunit

Monomer.

Similarity

Belongs to the MCM family.
Belongs to the ENDOU family.

Keywords

Complete proteome   Endonuclease   Hydrolase   Manganese   Metal-binding   Nuclease   Reference proteome   RNA-binding   Secreted   Signal  

Feature

chain  Poly(U)-specific endoribonuclease homolog

Uniprot

H9J1X0   A0A1E1WJY3   A0A2W1BPF9   S4P3D5   A0A194PPM0   I4DRI3   + More
A0A194QUU4   I4DPG3   A0A2A4JV71   A0A2A4JVG1   A0A2P8Z2R2   U4UIW8   B4H4U2   N6TQT1   A0A067QX30   Q29I02   B3MQP8   A0A0M3QZI8   A0A3B0K5W6   D3TQ61   A0A1W4V1D5   B4M819   B4MSH8   A0A1A9ZEJ9   B4L628   A0A1B0FRI4   A0A0T6B131   A0A1A9XBT6   A0A1B0BDZ2   A0A0L0C871   D6WSA3   A0A1A9WT30   A0A336L5G4   B3NVC5   A0A1I8PMP8   A0A1I8PMU6   B4JKK2   A0A1A9VCK9   B4R2P9   A0A1I8M0F7   X2JJD6   Q9VZ49   A0A1J1HRH3   T1PE22   U5EP18   A0A034VRM2   W8B102   B4IDV9   A0A0J7MSF7   A0A232FJB6   K7IUV7   A0A0K8U9P9   A0A0K8W848   A0A1Y1LQD3   A0A034VP83   A0A0A1WPF2   A0A2M4BLL3   T1E1H9   A0A2M3YZ96   A0A2M4BJW7   A0A2M3YZB4   A0A1S4FMU8   A0A1W6EVV9   A0A3L8D6C2   A0A026VYP5   A0A182QLB6   A0A2M4AC62   A0A2M4ABY0   A0A182VRQ6   T1E7J1   A0A182JDA4   A0A2M4DP21   A0A182XV19   A0A0C9QL97   Q16VA7   A0A1L8DY31   A0A182F7B5   A0A1B6FV66   F5HKF0   B8RJ46   A0A182XHG2   A0A182TY62   A0A182GGQ1   A0A182LG51   A0A182HTY4   A0A023EV40   A0A182V8M2   A0A1B6HJW4   A0A023EU03   A0A023EV44   E2BWC0   B4PYV9   A0A1Q3FM77   A0A182N4S7   E9IR65   E2APY1   B0X4J0   A0A0L7RIF8   A0A182RVA7   E2BWB9  

EC Number

3.1.-.-

Pubmed

19121390    28756777    23622113    26354079    22651552    29403074    + More
23537049    17994087    24845553    15632085    20353571    26108605    18362917    19820115    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    12537569    25348373    24495485    28648823    20075255    28004739    25830018    24330624    30249741    24508170    25244985    17510324    12364791    14747013    17210077    26483478    20966253    24945155    20798317    17550304    21282665   

EMBL

BABH01007795    BABH01007796    BABH01007797    BABH01007798    GDQN01003725    JAT87329.1    + More
KZ150007    PZC75197.1    GAIX01006489    JAA86071.1    KQ459597    KPI94923.1    AK405130    BAM20523.1    KQ461150    KPJ08750.1    AK403585    BAM19803.1    NWSH01000604    PCG75383.1    PCG75382.1    PYGN01000223    PSN50777.1    KB632322    ERL92343.1    CH479209    EDW32704.1    APGK01058327    KB741288    ENN70666.1    KK853256    KDR09265.1    CH379064    EAL31604.3    CH902621    EDV44674.2    CP012528    ALC49493.1    OUUW01000025    SPP89617.1    EZ423563    ADD19839.1    CH940653    EDW62295.1    CH963851    EDW75067.1    CH933812    EDW05824.1    CCAG010017603    LJIG01016277    KRT81084.1    JXJN01012729    JRES01000767    KNC28456.1    KQ971354    EFA05915.2    UFQS01001083    UFQT01001083    SSX08890.1    SSX28801.1    CH954180    EDV46113.1    CH916370    EDW00105.1    CM000366    EDX17598.1    AE014298    AHN59572.1    BT031314    AY075327    CVRI01000016    CRK90130.1    KA646954    AFP61583.1    GANO01003858    JAB56013.1    GAKP01013838    JAC45114.1    GAMC01011800    JAB94755.1    CH480830    EDW45767.1    LBMM01019810    KMQ83445.1    NNAY01000115    OXU30836.1    AAZX01008132    GDHF01029234    JAI23080.1    GDHF01005259    JAI47055.1    GEZM01049779    GEZM01049778    JAV75853.1    GAKP01013836    JAC45116.1    GBXI01013565    JAD00727.1    GGFJ01004781    MBW53922.1    GALA01001649    JAA93203.1    GGFM01000848    MBW21599.1    GGFJ01004225    MBW53366.1    GGFM01000830    MBW21581.1    KY563451    ARK19860.1    QOIP01000012    RLU15786.1    KK107565    EZA48923.1    AXCN02000015    GGFK01004991    MBW38312.1    GGFK01004948    MBW38269.1    GAMD01002997    JAA98593.1    GGFL01015139    MBW79317.1    GBYB01004299    JAG74066.1    CH477598    EAT38484.1    GFDF01002782    JAV11302.1    GECZ01015715    JAS54054.1    AAAB01008859    EAA07623.5    EGK96701.1    EGK96702.1    EZ000471    ACJ64345.1    JXUM01062154    JXUM01062155    JXUM01062156    KQ562186    KXJ76466.1    APCN01000591    GAPW01000737    JAC12861.1    GECU01032712    GECU01015858    JAS74994.1    JAS91848.1    GAPW01000738    JAC12860.1    GAPW01000721    JAC12877.1    GL451103    EFN80024.1    CM000162    EDX02037.1    GFDL01006364    JAV28681.1    GL765088    EFZ16938.1    GL441630    EFN64513.1    DS232343    EDS40407.1    KQ414584    KOC70614.1    EFN80023.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000218220    UP000245037    UP000030742    + More
UP000008744    UP000019118    UP000027135    UP000001819    UP000007801    UP000092553    UP000268350    UP000192221    UP000008792    UP000007798    UP000092445    UP000009192    UP000092444    UP000092443    UP000092460    UP000037069    UP000007266    UP000091820    UP000008711    UP000095300    UP000001070    UP000078200    UP000000304    UP000095301    UP000000803    UP000183832    UP000001292    UP000036403    UP000215335    UP000002358    UP000279307    UP000053097    UP000075886    UP000075920    UP000075880    UP000076408    UP000008820    UP000069272    UP000007062    UP000076407    UP000075902    UP000069940    UP000249989    UP000075882    UP000075840    UP000075903    UP000008237    UP000002282    UP000075884    UP000000311    UP000002320    UP000053825    UP000075900   

PRIDE

H9J1X0    X2JJD6    Q9VZ49   

Pfam

PF09412   XendoU        + More
PF05761   5_nucleotid
PF17207   MCM_OB
PF00493   MCM
PF17855   MCM_lid

Interpro

IPR018998   EndoU_C        + More
IPR008380   HAD-SF_hydro_IG_5-nucl       
IPR018525   MCM_CS       
IPR027417   P-loop_NTPase       
IPR033762   MCM_OB       
IPR041562   MCM_lid       
IPR001208   MCM_dom       
IPR023214   HAD_sf       
IPR003593   AAA+_ATPase       
IPR036412   HAD-like_sf       
IPR031327   MCM       
IPR012340   NA-bd_OB-fold       
IPR037227   EndoU-like       
IPR039787   ENDOU       

SUPFAM

SSF52540   SSF52540        + More
SSF142877   SSF142877       
SSF56784   SSF56784       
SSF50249   SSF50249       

Gene 3D

3.40.50.1000    

ProteinModelPortal

H9J1X0   A0A1E1WJY3   A0A2W1BPF9   S4P3D5   A0A194PPM0   I4DRI3   + More
A0A194QUU4   I4DPG3   A0A2A4JV71   A0A2A4JVG1   A0A2P8Z2R2   U4UIW8   B4H4U2   N6TQT1   A0A067QX30   Q29I02   B3MQP8   A0A0M3QZI8   A0A3B0K5W6   D3TQ61   A0A1W4V1D5   B4M819   B4MSH8   A0A1A9ZEJ9   B4L628   A0A1B0FRI4   A0A0T6B131   A0A1A9XBT6   A0A1B0BDZ2   A0A0L0C871   D6WSA3   A0A1A9WT30   A0A336L5G4   B3NVC5   A0A1I8PMP8   A0A1I8PMU6   B4JKK2   A0A1A9VCK9   B4R2P9   A0A1I8M0F7   X2JJD6   Q9VZ49   A0A1J1HRH3   T1PE22   U5EP18   A0A034VRM2   W8B102   B4IDV9   A0A0J7MSF7   A0A232FJB6   K7IUV7   A0A0K8U9P9   A0A0K8W848   A0A1Y1LQD3   A0A034VP83   A0A0A1WPF2   A0A2M4BLL3   T1E1H9   A0A2M3YZ96   A0A2M4BJW7   A0A2M3YZB4   A0A1S4FMU8   A0A1W6EVV9   A0A3L8D6C2   A0A026VYP5   A0A182QLB6   A0A2M4AC62   A0A2M4ABY0   A0A182VRQ6   T1E7J1   A0A182JDA4   A0A2M4DP21   A0A182XV19   A0A0C9QL97   Q16VA7   A0A1L8DY31   A0A182F7B5   A0A1B6FV66   F5HKF0   B8RJ46   A0A182XHG2   A0A182TY62   A0A182GGQ1   A0A182LG51   A0A182HTY4   A0A023EV40   A0A182V8M2   A0A1B6HJW4   A0A023EU03   A0A023EV44   E2BWC0   B4PYV9   A0A1Q3FM77   A0A182N4S7   E9IR65   E2APY1   B0X4J0   A0A0L7RIF8   A0A182RVA7   E2BWB9  

PDB

2C1W     E-value=4.41454e-30,     Score=325

KEGG

101740244    K14648 poly(U)-specific endoribonuclease [EC:3.1.-.-] | (RefSeq) poly(U)-specific endoribonuclease h

GO

GO:0004521   GO:0006270   GO:0003677   GO:0005524   GO:0090502   GO:0046872   GO:0003723   GO:0005576   GO:0016788   GO:0006260   GO:0003777   GO:0007018   GO:0030286   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

PANTHER

PTHR11630   PTHR12439   PTHR12103  

Subcellular location

Secreted  

Length:

259

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00556

Exp number, first 60 AAs:

0.00079

Total prob of N-in:

0.02307

outside

1  -  259

 

 

Pi

239.448203

Theta

185.707481

Tajima's D

0.63077

CLR

0.642383

CSRT

0.560221988900555

Interpretation

Uncertain