SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02796
Pre Gene Modal
BGIBMGA013209
Annotation
Uncharacterized_protein_OBRU01_22750_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 3.779
 

Sequence

CDS
ATGTCTCCATATCGAGAAGGAATGAAGGCATTCGAAAAGGCGACAACACATTTAGATAAATCATGCAAAGTCCTGGAAGATGGTCAGTGTAGCATAATAGTCGATCAATTGATCCACGAATACAAAGAATTAACTTACTATAATGAGCTACTTATGAATCAACATTTGAATGAGCACTACAGACAGCGTCGTGGTTTTATCAACGGTGTCGGATATCTTGCTAACTCTCTGTTCGGAGTATTAGATGAACATTTCGCAGAAAAATACTCGCAAGACATAGAGCTCGTAAAACATAATGAACAGTACTTAGTGAGTTTATGGAAAAACCAAACTTCGATCGTCGAATCTGAATACAACTTACTAAAAAGAACAGAAGAATTCATGTCTAAGCAACATAAGACTATTAATAAACACATAACTAACCTAGAAAACATGTCAAATCGACTTCAACAGCAAGTAAACAACATATCGATTCTACAAGAATTTACCTTAATGTCCATTATTACAACTAATTTATTGCACAATTTGAAAGGGTCGCAAAATATATTGTTAGACATTTTAACTAACATACATCATGGTCAATTCAACATTCATTTACTTACTCCAGAACAACTTCAAAAGGAACTAAACATTATCACCGGATATTTACCGGAAGACACAATTCTTCCCGTAGAACCGCAGAATATTAAGAATTTGTATCCTCTGTTAAACATAAAGGCTCGTATTACTCTACAATATTTCTTATTCGAGATAACATTTCCACTCATTTATCAAGATCGATTCAAACTTTATAAAGTACATTCTATTCCTCATCAAAGCGGAAATATGACTATTGAAGTAGTTCCGGCATACGAATACATTGCTACCGACTTGAAAAGAGATTCCTTTCTTGAACTCACCACCGAAGAAGTCTTATCCTGTAATCAACAAGAAGAAGCTTACTACTGCAAGCTTAGAACGCCGATTCTTCATTTACGACCGGAGACTAAGTTTTGTAAGATTAAACTTAATAGCAACGTATGCAAATTAAAGTATTCTAATTGTGAAACCAAAATAATAGCACTAACTCATCCCTCTTTATATTTATATCACTGCTGTGGCACCTGCGAAGTAAAGGTCATGTGCGGAGAACATATTGCCTTGAAACAGTTGAATAACACTGGTCGTCTGTATCTAGAGCCAGGTTGCCTCATAAAGGGATCAGATTATACACTTCATATCCCTAAAACAAACAACAATAAGCTGGAGATTCAGTCTAACATTTACGTTCCAATAATAGATCCCATAAATAATATCATAAACAGCTCTCTTCTCAACACTGAGAACCTGAATGTCAGCGAGTCTAAAGATTTGCAGAACGCTCTCCAGAAACTACACGTGCGTATTGAAGATCTAGAAAACTCCCCGCCAGTATTGGAGACTTCATTAACATCTCACGATATTCATCAGTATGTGATAACATACATCATCGTCATCGTCATCGTGCTGGCCACCGGCGTGCTACTCTGGCGACGACGACGGTTGAGTGCGAACCGGGCGATCATCTCTGACGGCATCGAGCTTCAACAGTATAGTGAATGTGAAAATGTAAATAGTGCTAAGGCAGGGTTTAGTGCGCGACCTTCTGTGGTGGACCCTTCGCCTGGTGATGTGAACATTTATGCCAAAGTGTCAAACAAAGCGTGCTCTCCAATACCAAGAAAACCTATATGGACCCTAAGTTCTTAA
Protein
MSPYREGMKAFEKATTHLDKSCKVLEDGQCSIIVDQLIHEYKELTYYNELLMNQHLNEHYRQRRGFINGVGYLANSLFGVLDEHFAEKYSQDIELVKHNEQYLVSLWKNQTSIVESEYNLLKRTEEFMSKQHKTINKHITNLENMSNRLQQQVNNISILQEFTLMSIITTNLLHNLKGSQNILLDILTNIHHGQFNIHLLTPEQLQKELNIITGYLPEDTILPVEPQNIKNLYPLLNIKARITLQYFLFEITFPLIYQDRFKLYKVHSIPHQSGNMTIEVVPAYEYIATDLKRDSFLELTTEEVLSCNQQEEAYYCKLRTPILHLRPETKFCKIKLNSNVCKLKYSNCETKIIALTHPSLYLYHCCGTCEVKVMCGEHIALKQLNNTGRLYLEPGCLIKGSDYTLHIPKTNNNKLEIQSNIYVPIIDPINNIINSSLLNTENLNVSESKDLQNALQKLHVRIEDLENSPPVLETSLTSHDIHQYVITYIIVIVIVLATGVLLWRRRRLSANRAIISDGIELQQYSECENVNSAKAGFSARPSVVDPSPGDVNIYAKVSNKACSPIPRKPIWTLSS

Summary

Pfam
PF12259   Baculo_F        + More
PF18701   DUF5641
PF17921   Integrase_H2C2
PF00230   MIP
PF05585   DUF1758
PF03564   DUF1759
PF05380   Peptidase_A17
PF00665   rve
PF00096   zf-C2H2
Interpro
IPR022048   Envelope_fusion-like        + More
IPR041588   Integrase_H2C2       
IPR040676   DUF5641       
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR036397   RNaseH_sf       
IPR000425   MIP       
IPR008042   Retrotrans_Pao       
IPR023271   Aquaporin-like       
IPR008737   Peptidase_asp_put       
IPR005312   DUF1759       
IPR021109   Peptidase_aspartic_dom_sf       
IPR036236   Znf_C2H2_sf       
IPR013087   Znf_C2H2_type       
IPR001995   Peptidase_A2_cat       
SUPFAM
SSF53098   SSF53098        + More
SSF81338   SSF81338       
SSF57667   SSF57667       
Gene 3D

Ontologies

Topology

Length:
575
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.87672
Exp number, first 60 AAs:
2e-05
Total prob of N-in:
0.01548
outside
1  -  480
TMhelix
481  -  503
inside
504  -  575
 
 

Population Genetic Test Statistics

Pi
249.716467
Theta
191.202089
Tajima's D
-1.365558
CLR
118.226262
CSRT
0.0754462276886156
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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