Gene

KWMTBOMO02791

Pre Gene Modal

BGIBMGA003498

Annotation

PREDICTED:_agrin-like_[Amyelois_transitella]

Location

Bomo_Chr5(+):10983200-10997991      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 3.278

CDS

ATGTGTGATGGTGGAAGAAGAGGAGCGCGAATGCAGCTCGCTGGCTGGATGATGTTTACTTGCCACATCCTTTTGTTTCTCACGTTGATTGGAGCTGCTCGTACCTGCTATCTTTTTCCAAGTGACGTGCCTAATCCGTGTCTTGGAGTAGCTTGCGGGCCGGGAGCGTTATGCCGACCCACAGCGGATGGTCGTTCTTACGATTGCGAGTGTCCGACAACTTGTCCAAGCTACGGCGATCACGAAGGATCACGTTCGCTCTGCGCAAGTGACGCTCGAGACTACTCCGGTGAATGTGAGATGCGCAGAGCTGCTTGCGAATCCAATACAAACATCACTTTCAAATATTACGGAAAGTGTGATCCTTGTGCCGGAGTAACTTGCCCTGACCCAGAGGTGTGCCAGCTAGATGAGCGTAGGGCTCCTTCGTGCCGGTGCGCAGAGCCCTGCCCCCTAGAATTTTCACCGGTCTGTGCATCGGACGGGAAAACCTACTCCAACGAATGCCAAATGCACCGTGAAAGTTGTCGTGCTAGGAAACAGCTAAAAATTATATTCAAGGGACAGTGCAGTTCCGGAGTGAATCCGTGTGCCGAAGTGGAGTGTCGTCACGGTGCAGAGTGCCGCGTAGAAGGCGGAGGAGCGGTGTGTGCGTGTCCGCCGTCCTGTGAACCAGTTCTGCGCCCTGTATGCGGCTCTGACTCTAGAACCCACGACAGTGAGTGCGAACTCCGACGGGCTGCATGTCTTCTTGGCAGAGAACTGAGGGTCCTGCACGCCGGAGCTTGTGGTTCTAACGGTGTGTGTGCCGATCGCGTGTGTCCCCACGGTGGCGAGTGCGTGGCGTCGGGCGGGCGCGGCGTGTGTCAGTGTCCACGCTGCTCCAACGAGTTCGCACCGGTTTGCGGCTCTGACGGCATCTCCTACGGGAATCGGTGCAAGCTGCAGCTAGAGGCTTGTCGCCATAGACGCGACGTGCACGTCTTGTACGACGGACCTTGCAACGGCTGCGAGAATAAGAAGTGTGAATATTACGCGGTCTGTGAAAGCGACGGCATCTCTGAAGCGAGTTGCGTTTGTCCAAAACACTGTGAAGAGGGAACAGAGACCGAAGAGATTTGTGGTAACGATAACAAAACTTATAGCAGCGTATGCGCTCTACGGGACATAGCTTGCAAAGAGAAGGGGAGACTGCACATTAAACACATGGGCTCGTGTGAGTCGTGCACGGGCGTGCAGTGTCCGTCTGGCACGTGGTGCGGGCGCGGGGCGTGCTCGTGCGCGGCGCCGTGCGCGGGTTCGGCGCGCGAGCCGGTGTGCTCGAGCGCGGGACGTACCTACCCGCACGAGTGTGCGCTCCTCAAGGCCGCCTGCGAAGCGAGAATGAGAGCCGAGCCCCAGCTCCGGGTCGCTTACTACGGCGAGTGCACGGATTCAGTCGACAATACTACGGCTGGTTTAAATAAAACAGGGGCATTATCAGAGTTAACGAATGAGATCAGATCAGAAGATACGACGGAAAATGCCAACGAAGGAGGGAGTAACGCTGTATGCGCTCGAGTACAGTGTGCCTATGAAGCTACTTGCGCCGTCGACTCCAACGGCCAACCTAGATGCGCTTGTCTCTTCGATTGCGCGGCGGCTGCTGCGGCTTCCACGTCGAGTCCGGTGTGCGCTTCCGATCTCAGATTGTATCCCACTTTGTGTCACATGAAGCTTGAGGCGTGTCGGCGACAAGAAGACTTGAGATTACGCCCCCTGGCACTTTGTCGAGGGCTAGAATTTAGACCGTGCGGGGATGACGAACCGCTCACTGACAAAGAAGGTCGTCCTTACGACTGCGGTGGCGGTCCACACCGTAAAGATTGTCCGATGGGCAGCTATTGTCACCACACTGCCAAAGCCGCTAGATGTTGTAGGAAAGACAAAGGGGTGACCGAGAAGAAAGGTTGCCAGGACACGTGGCACGGGTGCTGCGCTGATGGTGTCACTGCCGCAAGGGGTCCCGGCGGGGCCGGCTGTCCTTCGCAATGTGGGTGTCATAGACTTGGGTCAGTTAGGGAGCAGTGCGACGAGAGCGGTCAGTGCTCGTGCCGGGCGGGCGTGGGCGGACTCAAGTGCGACCGCTGCGAGCCCGGGTACTGGGGTCTGCCCAGGATCGGAACGGGACATGCCGGTTGTATACCCTGTGGGTGCTCTGCATTCGGATCGGTTCGTGAAGATTGTGAGCAGATGACGGGACGGTGTGTCTGTAAACCTGGCATACAGGGTCAGAAGTGTACCGTGTGCTCCAACCACGAACACACTTTAGGACCGAACGGTTGCTTCGATCCGGAATCAACCCAATTACCTGCTACGAATTGCGAGCACATGACATGCTATTTTGGTGCACATTGTTTGATGCGAAGTGGGCTTGCGATTTGCGATTGCAGTGCAGCAGAGTGTCCTGCTACCGAAGAGCCCCCAGTGTGCGGCAGCGACGATCGCACGTACCTCTCGGCTTGCCATCTCCGGACGCATGCTTGTAGAACACAATCCGATGTGGTTGTGCAAGCGTTCGGACCTTGCAGCGACGAATCACCTCACGTGAGGCGAGGTAGCCGCTCCGGTAGATCGACGCTCATAAAAGTATTTCCCTCACAGCCTGAGGATAGGCTAGAGTATGAGCACGTAAAGCGCACTTCCCAGCAGCTCACAGACGCTTCCGTAGACACGAGTGATAGCGGCAAACCTGACAGCCCCGAACCAGAATTGACTTGCTGCGTTAAATCATCGAGGGCTCCATTTGTGGATTTCGAATCGGAAACGAACGAGATCGAAGATGACACTTATGATGAGGAATACGTTGATAGGAGGGTTGAAGAGTCTTTTGAATTGCCTCTTTTTGATGGTAACGCCAGAATGACGGCTCGAATACGATTGCCCGCAAATCACTTCGATATATGGGCAGAGGTGACCGCTGTTTGTGACACGGGAGCCTTACTGAGTGCTTCCGGAACAAGGGACCATTTGTGGCTGGGTTATATCCGAAAGAAAGGAGTTTTGCGTTTTGACGTTGGCAGCGGACATTTGGATTTACATGCTGGACGATTAAAATTGGACGGAAGATCTACCATATCGGCGAGAAGATATAAAAGAGATGCTGAACTGAAGGTGGGCTTAGTGTCAGCTAGTGGCACGGCTAAGGGCCGCATGAGCTCGCTAAACACTGACCCGTTCGTCTATATTGGCTACTCGCCTGAAAATGTGACTAAGCTTACGGGATTATCGACGGTAGGATTTGTTGGATGCATTCATCGCCTACACATCAGCGGGCTTGACTTGATACCGCCCGCGCGTGGTCTAGTACTCAATACACACGGAGTCAAACCCTGCACTCCGTATCATTTAGCAAGATTAGTTTGCCCCTAA

Protein

MCDGGRRGARMQLAGWMMFTCHILLFLTLIGAARTCYLFPSDVPNPCLGVACGPGALCRPTADGRSYDCECPTTCPSYGDHEGSRSLCASDARDYSGECEMRRAACESNTNITFKYYGKCDPCAGVTCPDPEVCQLDERRAPSCRCAEPCPLEFSPVCASDGKTYSNECQMHRESCRARKQLKIIFKGQCSSGVNPCAEVECRHGAECRVEGGGAVCACPPSCEPVLRPVCGSDSRTHDSECELRRAACLLGRELRVLHAGACGSNGVCADRVCPHGGECVASGGRGVCQCPRCSNEFAPVCGSDGISYGNRCKLQLEACRHRRDVHVLYDGPCNGCENKKCEYYAVCESDGISEASCVCPKHCEEGTETEEICGNDNKTYSSVCALRDIACKEKGRLHIKHMGSCESCTGVQCPSGTWCGRGACSCAAPCAGSAREPVCSSAGRTYPHECALLKAACEARMRAEPQLRVAYYGECTDSVDNTTAGLNKTGALSELTNEIRSEDTTENANEGGSNAVCARVQCAYEATCAVDSNGQPRCACLFDCAAAAAASTSSPVCASDLRLYPTLCHMKLEACRRQEDLRLRPLALCRGLEFRPCGDDEPLTDKEGRPYDCGGGPHRKDCPMGSYCHHTAKAARCCRKDKGVTEKKGCQDTWHGCCADGVTAARGPGGAGCPSQCGCHRLGSVREQCDESGQCSCRAGVGGLKCDRCEPGYWGLPRIGTGHAGCIPCGCSAFGSVREDCEQMTGRCVCKPGIQGQKCTVCSNHEHTLGPNGCFDPESTQLPATNCEHMTCYFGAHCLMRSGLAICDCSAAECPATEEPPVCGSDDRTYLSACHLRTHACRTQSDVVVQAFGPCSDESPHVRRGSRSGRSTLIKVFPSQPEDRLEYEHVKRTSQQLTDASVDTSDSGKPDSPEPELTCCVKSSRAPFVDFESETNEIEDDTYDEEYVDRRVEESFELPLFDGNARMTARIRLPANHFDIWAEVTAVCDTGALLSASGTRDHLWLGYIRKKGVLRFDVGSGHLDLHAGRLKLDGRSTISARRYKRDAELKVGLVSASGTAKGRMSSLNTDPFVYIGYSPENVTKLTGLSTVGFVGCIHRLHISGLDLIPPARGLVLNTHGVKPCTPYHLARLVCP

Uniprot

A0A2H1VTI4   A0A212EHL3   A0A194QQ50   A0A2A4IXP1   A0A194PUU8   D6W6H4   + More
A0A088AKB5   A0A2A3EKT8   A0A0C9RSR6   U4UP17   E0VXE0   A0A154PEG8   A0A3L8DSG1   A0A026WZY0   A0A158NSW5   A0A195CTC7   A0A195EXA8   A0A2A4JF22   T1HF62   A0A232FMP8   A0A212EHJ2   A0A2W1BYX2   A0A195AU18   A0A194PUV3   A0A2A4JDF1   A0A2H1VKH8   T1L555   A0A2S2QS56   A0A2S2P6N0   J9LQ06   A0A2R7VNL5   A0A2T7PUE2   A0A2A4JEY9   R7V4Y2   V3ZGW6   B7Q201   T1K4Y7   A0A2R2MQ05   A0A2R2MQG6   A0A2R2MPT4   A0A1S3JID8   A0A2R2MPT7   A0A2R2MPT2   A0A2H8TDT1   A0A2R2MPT9   A0A226E1D1   A0A2C9JVB0   A0A2C9JVA8   T1L3L3  

Pubmed

22118469    26354079    18362917    19820115    23537049    20566863    + More
30249741    24508170    21347285    28648823    28756777    23254933    15562597   

EMBL

ODYU01004352    SOQ44139.1    AGBW02014874    OWR40961.1    KQ461181    KPJ07622.1    + More
NWSH01004707    PCG64737.1    KQ459597    KPI94910.1    KQ971307    EFA11111.1    KZ288217    PBC32385.1    GBYB01011675    JAG81442.1    KB632399    ERL94837.1    DS235830    EEB18046.1    KQ434889    KZC10266.1    QOIP01000004    RLU23266.1    KK107054    EZA61403.1    ADTU01025216    ADTU01025217    ADTU01025218    KQ977305    KYN03767.1    KQ981923    KYN32915.1    NWSH01001824    PCG69992.1    ACPB03007594    NNAY01000023    OXU31853.1    OWR40956.1    KZ149903    PZC78437.1    KQ976741    KYM75552.1    KPI94915.1    PCG69991.1    ODYU01003045    SOQ41330.1    CAEY01001221    GGMS01011341    MBY80544.1    GGMR01012249    MBY24868.1    ABLF02009653    ABLF02033728    ABLF02033729    ABLF02035097    ABLF02059535    KK854006    PTY09137.1    PZQS01000002    PVD37045.1    PCG69993.1    AMQN01000930    KB297234    ELU10835.1    KB202408    ESO90468.1    ABJB010454258    ABJB010611941    ABJB010656059    ABJB010701721    ABJB010786146    ABJB010897557    ABJB011000417    DS840466    EEC12873.1    CAEY01001581    GFXV01000456    MBW12261.1    LNIX01000007    OXA51343.1    CAEY01001039    CAEY01001040   

Proteomes

UP000007151    UP000053240    UP000218220    UP000053268    UP000007266    UP000005203    + More
UP000242457    UP000030742    UP000009046    UP000076502    UP000279307    UP000053097    UP000005205    UP000078542    UP000078541    UP000015103    UP000215335    UP000078540    UP000015104    UP000007819    UP000245119    UP000014760    UP000030746    UP000001555    UP000085678    UP000198287    UP000076420   

PRIDE

B7Q201   

Pfam

PF00053   Laminin_EGF        + More
PF02210   Laminin_G_2
PF07648   Kazal_2
PF00054   Laminin_G_1
PF00008   EGF
PF01683   EB
PF00050   Kazal_1
PF03146   NtA

Interpro

IPR002049   Laminin_EGF        + More
IPR013320   ConA-like_dom_sf       
IPR003645   Fol_N       
IPR036058   Kazal_dom_sf       
IPR003884   FacI_MAC       
IPR002350   Kazal_dom       
IPR001791   Laminin_G       
IPR000742   EGF-like_dom       
IPR009030   Growth_fac_rcpt_cys_sf       
IPR001881   EGF-like_Ca-bd_dom       
IPR013032   EGF-like_CS       
IPR006149   EB_dom       
IPR001190   SRCR       
IPR001368   TNFR/NGFR_Cys_rich_reg       
IPR008993   TIMP-like_OB-fold       
IPR004850   NtA_dom       

SUPFAM

SSF49899   SSF49899        + More
SSF100895   SSF100895       
SSF57184   SSF57184       
SSF50242   SSF50242       

ProteinModelPortal

A0A2H1VTI4   A0A212EHL3   A0A194QQ50   A0A2A4IXP1   A0A194PUU8   D6W6H4   + More
A0A088AKB5   A0A2A3EKT8   A0A0C9RSR6   U4UP17   E0VXE0   A0A154PEG8   A0A3L8DSG1   A0A026WZY0   A0A158NSW5   A0A195CTC7   A0A195EXA8   A0A2A4JF22   T1HF62   A0A232FMP8   A0A212EHJ2   A0A2W1BYX2   A0A195AU18   A0A194PUV3   A0A2A4JDF1   A0A2H1VKH8   T1L555   A0A2S2QS56   A0A2S2P6N0   J9LQ06   A0A2R7VNL5   A0A2T7PUE2   A0A2A4JEY9   R7V4Y2   V3ZGW6   B7Q201   T1K4Y7   A0A2R2MQ05   A0A2R2MQG6   A0A2R2MPT4   A0A1S3JID8   A0A2R2MPT7   A0A2R2MPT2   A0A2H8TDT1   A0A2R2MPT9   A0A226E1D1   A0A2C9JVB0   A0A2C9JVA8   T1L3L3  

PDB

2P6A     E-value=9.20904e-20,     Score=243

KEGG

101739084    K06254 agrin | (RefSeq) agrin-like

PATHWAY

04512    ECM-receptor interaction - Bombyx mori (domestic silkworm)

GO

GO:0005509   GO:0016020   GO:0005044   GO:0016021   GO:0005886   GO:0043236   GO:0043113   GO:0007213   GO:0005515   GO:0003676   GO:0008026   GO:0006506   GO:0016740   GO:0004889   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

SignalP

Position:   1 - 32,         Likelihood:  0.871235

 

 

Length:

1136

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

20.96387

Exp number, first 60 AAs:

20.95697

Total prob of N-in:

0.99890

POSSIBLE N-term signal

sequence

inside

1  -  12

TMhelix

13  -  35

outside

36  -  1136

 

 

Pi

248.719902

Theta

20.089328

Tajima's D

0.113368

CLR

2.429022

CSRT

0.408579571021449

Interpretation

Uncertain