Gene

KWMTBOMO02790  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003497

Annotation

chromodomain-helicase-DNA-binding_protein_1_[Bombyx_mori]

Location

Bomo_Chr5(+):10964630-10977484      View in EpiBrowser

Full name

Chromodomain-helicase-DNA-binding protein 1      

Alternative Name

ATP-dependent helicase CHD1

Location in the cell

Nuclear   Reliability : 4.148

CDS

ATGCACCTGAAGGGTTCCATAAATGAATCTGAAAGTGATTCCACAAGTGAAAAAGGAGATAAAAGTGACTCCAGCGAATCAGGCTCTGGAAGCGAAAGTGAAAGTGGCTCTAGTTCCTCAGGTTCAGGATCACACAGATCTGCATCAGAAAAATCTGGTGTAGGGGGTTCACATCATAGTGATGATAGCAAAACATCACATAACTATGATAATGCGAATTCATCAAAATCTGACCATCATACTGATAAAAATAGTTCTGATGAAGACTCAGCACCAAAGTCTAGATCTAGAAATAGCCATAGCAAAGTAAAATCTGATCTTTGGGAAGAAAATCCAGATATATATGGAATCAGAAGATCAGCACGGCCAAGAAAAGAGCCAGATAGATTAAAATTAGCAGATAGTGATTCTAGTGAAAGAGATAGAACTCACAGTCGGAAAAGTAGAAAAAAAAGCAACTCATGGAATTCTGATACATCAGAAAGTGACAGTGAAATAGGGGGCTCTCCACCACCACCATCAAAGAGACCTGGCCAAAGAAGTCTACCTCTGAGGAAAAAGAAACCGAGTAGGAGAAGAAGGTATTCTAGTGACGAAGAAGAGAGTTCAGAGGGTACAGATGATGAAAGCAAGAGTCGAACAACAACAAGACGTACAGGCGCAGCAGTTAGTTATAAAGAAGCAAGTGATGAACAAACTGATTCTTCTGATCTTTTGGAGGTGGAAGGTGTGGAAGGAGATGGTGAAGCTGAGCCAGAACCTGAGGATCATAGTGAGACAATAGAACGAGTTCTGGGAATGCGACGAGGGAAAAAAGGAGTCACTGGCAATGTGACCACCATTTATTATATAGAAGAACATGGAGACCCTAATGAAGGTTGTGACCCTAATGATGAAGACTCTACTGAACCTCAATACCTGATAAAGTGGAAAGGATGGTCACATATTCACAACACATGGGAATCTGAAAAGACAATTAATGATCAAAAAGTTAAAGGCTTAAAGAAACTGGAAAACTTTATTAAGAAAGAAGTAGAAATCTCATGGTGGAGACAGCAAGCTGGACCTGAGGATATAGATTACTATGAGTGTCAGTCTGAACTACAGCAAGAATTAGTTAAAACCTACAATAACGTTGAAAGGATAATAGCTGAACAAAATCGTGAGCTAGAAGGTGGTGGAACTGCTCATGAATATTTTTGCAAATGGGAATCTCTTCCATATGCTGATGCAACATGGGAAGATGCAGTTTTAATAGAGAAAAGATGGCCTGTTGAGGTGGAGCACTTTAAAAGTCGAGAAGCTGCTAAAAGTACTCCATCTAGGCATTGCCCTGTATTGAAAAGGCGACCCAAGTTTCATCAGATAAAAGAACAACCTGAATACGTGGGAAAAGATTCAAGTTACCACTTGAGAGATTATCAAATGGATGGATTGAATTGGTTAATTCACTCATGGTGTAAAGACAATTCAGTAATTTTAGCAGATGAAATGGGCCTAGGCAAAACGATACAGACAATTTGTTTTTTATACTATCTCTTCAAGTCGCAACATCTGTATGGACCATTTCTTTGTGTAGTGCCTCTGAGTACAATGACTGCCTGGCAAAGGGAATTTCAGCAGTGGGCACCCGACATTAATGTTGTTACTTATATTGGTGATGTTAGTAGCAGAGATATAATTAGGCAGTTTGAGTGGAGCTTTTCTAGCTCAAAAAGACTGAAATTTAACGCAATATTAACCACATATGAGATTTTGTTAAAAGACAGACAGTTTTTAAGGTCTTTTAGTTGGGCTTGCTTGCTTGTAGATGAGGCTCATAGGTTAAAAAACGATGACTCTCTACTATATAAGGCCTTAAAAGAATTTGATACCAATCATAGATTATTAGTTACTGGTACACCTTTACAAAACTCACTGAAAGAATTGTGGGCCCTTTTACATTTTATAATGCCTTACAAGTTTGAGTCTTGGGAAGACTTTGAAAAAGATCATGAAGATGCTGCTACCAAAGGATACGAAAAATTACACAAACAGTTAGAACCGTTTATATTAAGGAGGCAGAAAAAAGATGTAGAAAAATCATTACCTGCCAAAGTGGAACAAATATTAAGGGTGGAAATGACATCTATACAAAAACAATACTACAAATGGATATTAACAAAAAACTATAGTGCACTTAGAAAAGGCGTAAAAGGTTCAATTAACACATTTATCAATATTGTTATTGAACTAAAAAAATGTTGCAACCATGCATTATTGACAAAGCCAGAAGATTTCGAGTCTAGAGCTTCTCTTGCTACTTCGGATGCTGTTGAGAAACTTCTTAGGGGCTCAGGAAAATTACTTTTGCTAGATAAACTGCTGTGCAGGTTAAAGGAGACTGGTCATAGGGTTTTAATCTTTTCTCAAATGGTCCGAATGTTAGACATTTTAGCAGAATATTTACAAAGGAGACATTTTCCTTTTCAACGTCTTGATGGAAGCATTAAAGGTGAATTGAGAAAACAAGCACTTGATCATTTTAACGCTGAAGGTTCGCAAGACTTCTGTTTTTTGTTGTCTACTCGTGCTGGTGGGTTAGGTATTAACCTTGCCACTGCAGATACTGTGATAATATTTGACTCAGACTGGAATCCTCAAAATGATTTGCAAGCACAAGCACGAGCACATCGTATTGGTCAAAAAAATCAGGTTAATATTTATAGGTTAGTGACTGCAAGGTCTGTTGAAGAAGATATTGTAGAGAGAGCAAAAAGAAAAATGGTTTTAGACCACCTGGTAATTCAAAGAATGGATACTACTGGAAAAACTGTGCTGAACAAACGGGATGCTTCAGGGACCACAGCCAATAATCCATTCAATAAAGAAGATTTAAATGCTATTTTAAAATTTGGTGCTGAAGAGCTTTTTAAAGATGATGAAGAAAATGATGAAGACCCAGTTTGTGACATTGATGAAATTTTGCAAAGGGCTGAAACCCGGGATGAAGGTCCTGCAATGGTGGGTGATGAGTTACTGTCAGCTTTTAAGGTGGCTAGTTTTACTTTTGATGAAGAGAAAGCTGTCAATGAACTGAAGAAAGATAATGCTGATGAAGAACCTAAAGACTGGGATGACATCATCCCTGAAAATGTTCGGAAAACAATAGCAGAAGCAGAAAAATTAAAAGAAATGGAAGATATTTATTTGCCACCTCGAAGAAAAAATCAACTACAAAATAATGCTGATGGTGGTAGAAGACGTCGCGGTCGTTCTGGTGATGGTGGCGATGGCGATGGTGTTGATGGTGACGGTGAGGCTGAAAGCGATGCATCTGATGGTGAAGCCAGTGCTGATGATGATCGACCGAGAAAAAGAGGTCGTCCTCCTGCTTCACATCGGGAGAAAATCAAAGGCTTCACAGATCAAGAGATAAGACGTTTTGTGAAAAGCTATAAGAAATTTTCCGCGCCACTGAAGCATCTCGACAGTATAGCGTGTGATGCCGAATTACAAGAAAAACCATTAGCTGAGCTAAAAAGACTGGGTGAAATACTGCAGGAAAGATGTAAAGCTGTACTTAGTGAGACAGCAGAACCAAGTGAACAAAATGAAGGCCGTAAAAACAACAGGAAGACATTTAAACTCGGAGGAGTACCTGTAAATGCGAAAACCCTAGCTGCATGTCAAGATGAGTTGGCAGCTTTGGATGACTTTCTGCCACAAACTAAAGAAGAACGTCTCAAGTGGCAACTAGATTTTAGGACGAGACCAGCGAATTTTGATGTTGAGTGGAATGTCTCGGACGATTCAAAATTACTAGCAGGAATATACCAATATGGTCTGGGATCATGGGAAGCAATAAAAATGGATTCTTCTTTCGAAATAGGAGATAAAATATTAACGAATGAGGATAAAAAACCTCAAGCAAAACACCTACAGTCGCGAGCAGAGTACTTATTAAAGCTTATTAAAAAGTTACTGGATCAAAAGAATGGAAAACAAAAAATGAAAAAACCTCGACCGAAGAGGGCAAATAAAGAACCGGTCACCAAAGATATTGTCGAAGATGACGGTAGCTCAGCTGAAGATAAAAAAACTAAAGGTGTTAAAAATGATAAAACTGAAAAGGGTAAATTAAAAATTGAAGAAGTTTCTACACATGATGAAACTTCTAACGATAAGAAAGAAAAAGACAAAAAACGTAAAAAAGACGAAGACCGCAAGGGTGACAAATCTAAAGGACGGAAGAAACCACGACAAAGAGGAAATGAAGGAATACCAGGTCCCATGCATTTTACTGCCAACAATGAACCAAGGGCCTTGGAAGTCTTAGGAGATTTAGATCCATCAGTTTTTGAAGAGTGCAAAGAAAAAATGAGACCAGTTAAAAAGGCTCTAAAGGCTCTCGACAATCCAGACCAATCTTTATCGGAAACTGAACAAGTGTCAAGAACCAGGGCCTGCCTCACCCAGATAGGTACTCAAATAGATTTGTGTGTTGAAGCATATCCAGATTCTCAAAAAGTAGAATGGAGAAGTAATCTCTGGTACTTCGTTTCAAAATTCACTAACTTTGATGCAAAGCAGTTGTACAAGTTGTACAAGTATGGCCTAAAGAAAAATGAAGCTTCAAAGCAAAAAGATGGGAAGCATAAAGAAAATGTCAAGACAAATAATCGTAATAATCATAACTCCATAAACCATTTAAAATCATTCAAGAAAAATTCAAATTCAAAGCAAAAAAGTGATACAAATGATAAAAAAGAAAAGAAAATGAAGCTAGAAAAGGAGAAAACTGATAAGCACGATAAAAACCAGCATACATCAGGGGTCAAGAGAAAACTAGAAGATGGAGAATGTGACCCAGAACCCAATGATAATAAACGCCACGAAAGAACTAAACGCAGAGACAAGGATCGCAAGTATAAAGATGGGGACTTGAAGCAAGACGATTTGATGTACAGAGAACGGAGTCGGTCGGAACGAGAGAGGGATCGTGATCGAGAAAGGGACAGGGATCGTGACCGAGAACGCGATCGAGATCGCGAAAGGGACCGAGACCGTTCGCGGACACGGCGGGACAGCGGCGGCGCGGGGGGGCCGCGGGCTCGGCCTTATGTGGCACAGCACGCGCACGTCGAGCACCCCTCGCACCCTGCACACCCCGCCTGGACCCCGCCGCCCTATCCCGGGCCCCGACAGTACCGCGGAGACCGCAATCAGAGACAACACGATAAAAGAAGGTATGGATTCAGTGGCATGGCAGGTCCATACGGTGGCTATTATGATAGCACAACAACCATGGCTAGTGGTATGGGTTTTCCGCCTGTGAGGCCTTACGCAGACGACTGGAGAGGATATTCACAGCCTGAATATGGCTACGATGATCGGGAGTACGAGCGTGAAGTTTATAGAAGAGATTACGATAGACGCGCACCACCAACATGA

Protein

MHLKGSINESESDSTSEKGDKSDSSESGSGSESESGSSSSGSGSHRSASEKSGVGGSHHSDDSKTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEENPDIYGIRRSARPRKEPDRLKLADSDSSERDRTHSRKSRKKSNSWNSDTSESDSEIGGSPPPPSKRPGQRSLPLRKKKPSRRRRYSSDEEESSEGTDDESKSRTTTRRTGAAVSYKEASDEQTDSSDLLEVEGVEGDGEAEPEPEDHSETIERVLGMRRGKKGVTGNVTTIYYIEEHGDPNEGCDPNDEDSTEPQYLIKWKGWSHIHNTWESEKTINDQKVKGLKKLENFIKKEVEISWWRQQAGPEDIDYYECQSELQQELVKTYNNVERIIAEQNRELEGGGTAHEYFCKWESLPYADATWEDAVLIEKRWPVEVEHFKSREAAKSTPSRHCPVLKRRPKFHQIKEQPEYVGKDSSYHLRDYQMDGLNWLIHSWCKDNSVILADEMGLGKTIQTICFLYYLFKSQHLYGPFLCVVPLSTMTAWQREFQQWAPDINVVTYIGDVSSRDIIRQFEWSFSSSKRLKFNAILTTYEILLKDRQFLRSFSWACLLVDEAHRLKNDDSLLYKALKEFDTNHRLLVTGTPLQNSLKELWALLHFIMPYKFESWEDFEKDHEDAATKGYEKLHKQLEPFILRRQKKDVEKSLPAKVEQILRVEMTSIQKQYYKWILTKNYSALRKGVKGSINTFINIVIELKKCCNHALLTKPEDFESRASLATSDAVEKLLRGSGKLLLLDKLLCRLKETGHRVLIFSQMVRMLDILAEYLQRRHFPFQRLDGSIKGELRKQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEDIVERAKRKMVLDHLVIQRMDTTGKTVLNKRDASGTTANNPFNKEDLNAILKFGAEELFKDDEENDEDPVCDIDEILQRAETRDEGPAMVGDELLSAFKVASFTFDEEKAVNELKKDNADEEPKDWDDIIPENVRKTIAEAEKLKEMEDIYLPPRRKNQLQNNADGGRRRRGRSGDGGDGDGVDGDGEAESDASDGEASADDDRPRKRGRPPASHREKIKGFTDQEIRRFVKSYKKFSAPLKHLDSIACDAELQEKPLAELKRLGEILQERCKAVLSETAEPSEQNEGRKNNRKTFKLGGVPVNAKTLAACQDELAALDDFLPQTKEERLKWQLDFRTRPANFDVEWNVSDDSKLLAGIYQYGLGSWEAIKMDSSFEIGDKILTNEDKKPQAKHLQSRAEYLLKLIKKLLDQKNGKQKMKKPRPKRANKEPVTKDIVEDDGSSAEDKKTKGVKNDKTEKGKLKIEEVSTHDETSNDKKEKDKKRKKDEDRKGDKSKGRKKPRQRGNEGIPGPMHFTANNEPRALEVLGDLDPSVFEECKEKMRPVKKALKALDNPDQSLSETEQVSRTRACLTQIGTQIDLCVEAYPDSQKVEWRSNLWYFVSKFTNFDAKQLYKLYKYGLKKNEASKQKDGKHKENVKTNNRNNHNSINHLKSFKKNSNSKQKSDTNDKKEKKMKLEKEKTDKHDKNQHTSGVKRKLEDGECDPEPNDNKRHERTKRRDKDRKYKDGDLKQDDLMYRERSRSERERDRDRERDRDRDRERDRDRERDRDRSRTRRDSGGAGGPRARPYVAQHAHVEHPSHPAHPAWTPPPYPGPRQYRGDRNQRQHDKRRYGFSGMAGPYGGYYDSTTTMASGMGFPPVRPYADDWRGYSQPEYGYDDREYEREVYRRDYDRRAPPT

Description

ATP-dependent chromatin-remodeling factor which functions as substrate recognition component of the transcription regulatory histone acetylation (HAT) complex SAGA. Regulates polymerase II transcription. Also required for efficient transcription by RNA polymerase I, and more specifically the polymerase I transcription termination step. Regulates negatively DNA replication. Not only involved in transcription-related chromatin remodeling, but also required to maintain a specific chromatin configuration across the genome. Required for maintaining open chromatin and pluripotency in embryonic stem cells (By similarity). Has a key role in chorion gene regulation and nucleosome positioning. Its binding to middle chorion gene promoters is correlated with H3K4 methylation and TFIID recruitment.

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Subunit

Component of the SAGA complex (By similarity). Interacts with HMGA.

Similarity

Belongs to the SNF2/RAD54 helicase family.

Keywords

ATP-binding   Chromatin regulator   Chromosome   Complete proteome   DNA-binding   Helicase   Hydrolase   Nucleotide-binding   Nucleus   Reference proteome   Repeat   Transcription   Transcription regulation  

Feature

chain  Chromodomain-helicase-DNA-binding protein 1

Uniprot

A9X4T1   A0A2A4JXC3   A0A2H1VTI9   A0A2A4JXR1   A0A194QVN9   A0A2A4JWN0   + More
A0A194PQ93   A0A2J7PKZ4   A0A067RA71   A0A139WPB4   D6W7J9   A0A1Y1LHF8   A0A1Y1LIY8   A0A0C9R3W5   A0A1L8DWS8   A0A0A9ZDZ7   A0A0A9ZH20   A0A2A3ES40   R4WJH4   K7IS15   E2BBM7   A0A0A1XHZ4   A0A232F504   A0A224X507   A0A034V7B8   A0A034V8Y8   A0A069DYF2   A0A0K8WIC9   A0A0K8WKQ6   A0A0K8U4N2   W4VRS9   A0A088AL96   A0A1B0C0U9   A0A1B0BZ13   A0A1A9X855   A0A154P711   N6UHB5   W8ADQ8   A0A1B0FRK9   W8AZH4   A0A1A9V1B0   A0A1B0A888   B0W4T0   A0A1A9WX76   A0A336KYL8   A0A336KUR3   A0A336MTF9   A0A336LCZ0   A0A1I8MBI8   A0A1I8PFM6   B4JCS5   A0A1Q3F4E4   A0A1Q3F499   A0A026W9M2   A0A1Q3F445   A0A3L8DSL9   Q17C30   Q17C31   A0A1S4F8F0   A0A1B0DNL6   A0A1S4F8J6   A0A151WNH8   A0A0Q9WA87   B4M9B0   A0A182GSW6   A0A195BVQ5   A0A158N917   Q29KH0   B4GSA0   F4WHI6   A0A3B0JIX1   A0A151IBK4   A0A151J7N5   A0A195FTJ4   A0A0Q9X541   B4KHL3   A0A3B0JJF9   A0A0M4ENQ6   E2AAF8   B4MX23   A0A0L7QRL7   A0A0M8ZYN6   A0A310SEJ0   A0A0P5RK84   A0A0P5KNQ4   A0A0P5KXI8   A0A0P6E9X6   A0A0P5KSU9   A0A0N7ZMZ7   A0A0P4YC79   A0A0P6HNG2   J9JSF0   Q7Q8C2   A0A0N8EC59   A0A0P5P864   A0A0P5RIS1  

EC Number

3.6.4.12

Pubmed

18817785    26354079    24845553    18362917    19820115    28004739    + More
25401762    26823975    23691247    20075255    20798317    25830018    28648823    25348373    26334808    23537049    24495485    25315136    17994087    24508170    30249741    17510324    26483478    21347285    15632085    21719571    12364791   

EMBL

DQ402511    NWSH01000438    PCG76426.1    ODYU01004352    SOQ44140.1    PCG76424.1    + More
KQ461181    KPJ07621.1    PCG76425.1    KQ459597    KPI94909.1    NEVH01024531    PNF16997.1    KK852784    KDR16583.1    KQ971307    KYB29784.1    EFA11270.1    GEZM01057468    JAV72321.1    GEZM01057469    JAV72320.1    GBYB01001501    GBYB01008865    JAG71268.1    JAG78632.1    GFDF01003167    JAV10917.1    GBHO01000101    GBHO01000097    JAG43503.1    JAG43507.1    GBHO01000100    GBHO01000098    GDHC01007025    JAG43504.1    JAG43506.1    JAQ11604.1    KZ288189    PBC34575.1    AK417690    BAN20905.1    GL447128    EFN86904.1    GBXI01004169    JAD10123.1    NNAY01001030    OXU25417.1    GFTR01008841    JAW07585.1    GAKP01020930    JAC38022.1    GAKP01020929    JAC38023.1    GBGD01000072    JAC88817.1    GDHF01001406    JAI50908.1    GDHF01000854    JAI51460.1    GDHF01030838    JAI21476.1    GANO01000567    JAB59304.1    JXJN01023761    JXJN01022943    KQ434827    KZC07631.1    APGK01020350    KB740193    KB631669    ENN81105.1    ERL85219.1    GAMC01020280    JAB86275.1    CCAG010002366    GAMC01020279    JAB86276.1    DS231839    EDS34268.1    UFQS01001101    UFQT01001101    SSX09015.1    SSX28926.1    SSX09014.1    SSX28925.1    UFQS01002642    UFQT01002642    SSX14424.1    SSX33834.1    SSX14425.1    SSX33835.1    CH916368    EDW03164.1    GFDL01012687    JAV22358.1    GFDL01012688    JAV22357.1    KK107372    EZA51719.1    GFDL01012732    JAV22313.1    QOIP01000004    RLU23404.1    CH477313    EAT43872.1    EAT43871.1    AJVK01001410    AJVK01001411    AJVK01001412    AJVK01001413    KQ982907    KYQ49462.1    CH940654    KRF77951.1    EDW57786.1    JXUM01085595    JXUM01085596    KQ563513    KXJ73718.1    KQ976405    KYM91888.1    ADTU01009035    ADTU01009036    CH379061    EAL33204.2    CH479189    EDW25647.1    GL888161    EGI66340.1    OUUW01000006    SPP82374.1    KQ978095    KYM97011.1    KQ979640    KYN20026.1    KQ981268    KYN43940.1    CH933807    KRG03180.1    EDW12292.2    SPP82375.1    CP012523    ALC38337.1    GL438125    EFN69559.1    CH963857    EDW76662.1    KQ414775    KOC61273.1    KQ435794    KOX73790.1    KQ762190    OAD56154.1    GDIQ01099567    JAL52159.1    GDIQ01181390    JAK70335.1    GDIQ01178637    JAK73088.1    GDIQ01065834    JAN28903.1    GDIQ01180087    JAK71638.1    GDIP01229561    JAI93840.1    GDIP01229560    JAI93841.1    GDIQ01024552    JAN70185.1    ABLF02038289    ABLF02038297    AAAB01008944    EAA10171.4    GDIQ01041196    JAN53541.1    GDIQ01132317    JAL19409.1    GDIQ01100974    JAL50752.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000053268    UP000235965    UP000027135    + More
UP000007266    UP000242457    UP000002358    UP000008237    UP000215335    UP000005203    UP000092460    UP000092443    UP000076502    UP000019118    UP000030742    UP000092444    UP000078200    UP000092445    UP000002320    UP000091820    UP000095301    UP000095300    UP000001070    UP000053097    UP000279307    UP000008820    UP000092462    UP000075809    UP000008792    UP000069940    UP000249989    UP000078540    UP000005205    UP000001819    UP000008744    UP000007755    UP000268350    UP000078542    UP000078492    UP000078541    UP000009192    UP000092553    UP000000311    UP000007798    UP000053825    UP000053105    UP000007819    UP000007062   

PRIDE

A9X4T1   

Pfam

PF13907   DUF4208        + More
PF00176   SNF2_N
PF00385   Chromo
PF00271   Helicase_C
PF18375   CDH1_2_SANT_HL1
PF09111   SLIDE
PF00505   HMG_box
PF09011   HMG_box_2

Interpro

IPR000953   Chromo/chromo_shadow_dom        + More
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR023779   Chromodomain_CS       
IPR000330   SNF2_N       
IPR040793   CDH1_2_SANT_HL1       
IPR025260   DUF4208       
IPR002464   DNA/RNA_helicase_DEAH_CS       
IPR023780   Chromo_domain       
IPR016197   Chromo-like_dom_sf       
IPR020846   MFS_dom       
IPR036259   MFS_trans_sf       
IPR009057   Homeobox-like_sf       
IPR001005   SANT/Myb       
IPR015195   SLIDE       
IPR009071   HMG_box_dom       
IPR036910   HMG_box_dom_sf       
IPR017967   HMG_boxA_CS       

SUPFAM

SSF52540   SSF52540        + More
SSF54160   SSF54160       
SSF103473   SSF103473       
SSF46689   SSF46689       
SSF47095   SSF47095       

Gene 3D

3.40.50.10810     1.10.30.10    

CDD

cd00079  HELICc
cd00024  CHROMO
cd06174  MFS
cd00167  SANT

ProteinModelPortal

A9X4T1   A0A2A4JXC3   A0A2H1VTI9   A0A2A4JXR1   A0A194QVN9   A0A2A4JWN0   + More
A0A194PQ93   A0A2J7PKZ4   A0A067RA71   A0A139WPB4   D6W7J9   A0A1Y1LHF8   A0A1Y1LIY8   A0A0C9R3W5   A0A1L8DWS8   A0A0A9ZDZ7   A0A0A9ZH20   A0A2A3ES40   R4WJH4   K7IS15   E2BBM7   A0A0A1XHZ4   A0A232F504   A0A224X507   A0A034V7B8   A0A034V8Y8   A0A069DYF2   A0A0K8WIC9   A0A0K8WKQ6   A0A0K8U4N2   W4VRS9   A0A088AL96   A0A1B0C0U9   A0A1B0BZ13   A0A1A9X855   A0A154P711   N6UHB5   W8ADQ8   A0A1B0FRK9   W8AZH4   A0A1A9V1B0   A0A1B0A888   B0W4T0   A0A1A9WX76   A0A336KYL8   A0A336KUR3   A0A336MTF9   A0A336LCZ0   A0A1I8MBI8   A0A1I8PFM6   B4JCS5   A0A1Q3F4E4   A0A1Q3F499   A0A026W9M2   A0A1Q3F445   A0A3L8DSL9   Q17C30   Q17C31   A0A1S4F8F0   A0A1B0DNL6   A0A1S4F8J6   A0A151WNH8   A0A0Q9WA87   B4M9B0   A0A182GSW6   A0A195BVQ5   A0A158N917   Q29KH0   B4GSA0   F4WHI6   A0A3B0JIX1   A0A151IBK4   A0A151J7N5   A0A195FTJ4   A0A0Q9X541   B4KHL3   A0A3B0JJF9   A0A0M4ENQ6   E2AAF8   B4MX23   A0A0L7QRL7   A0A0M8ZYN6   A0A310SEJ0   A0A0P5RK84   A0A0P5KNQ4   A0A0P5KXI8   A0A0P6E9X6   A0A0P5KSU9   A0A0N7ZMZ7   A0A0P4YC79   A0A0P6HNG2   J9JSF0   Q7Q8C2   A0A0N8EC59   A0A0P5P864   A0A0P5RIS1  

PDB

3MWY     E-value=4.96264e-166,     Score=1506

KEGG

100134916    K11367 chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12] | (RefSeq) CHD1, CHD-1; Chromodomai

GO

GO:0003677   GO:0005694   GO:0004386   GO:0005524   GO:0006325   GO:0005634   GO:0016021   GO:0006338   GO:0016887   GO:0003676   GO:0008026   GO:0006506   GO:0016740   GO:0004889   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

Subcellular location

Nucleus  
Chromosome  

Length:

1810

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00877

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1  -  1810

 

 

Pi

224.073904

Theta

207.879584

Tajima's D

0.179543

CLR

1.812071

CSRT

0.419129043547823

Interpretation

Uncertain