SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02785  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003698
Annotation
PREDICTED:_UPF0585_protein_C16orf13_homolog_A_[Amyelois_transitella]
Full name
UPF0585 protein CG18661      
Location in the cell
Cytoplasmic   Reliability : 1.103 Extracellular   Reliability : 1.122
 

Sequence

CDS
ATGTCGAAATTAAAGGATTTCTCATGTGCTTTTCATGGAAATGAAAACATGGCAAATCAAAAGTTGATATATCCAGCAGCAACAAGGAACCAAGAGCCAATTCTGCAAGTTTTAAAGAGATTTGTAACCTATGATTGTGCAGAAGATGATAGTCCATTTTTTTTAGAGGTAGCCTCAGGCTCAGGACAACATTTAGCACACTTTGCACCTCATTTTCCAAATATAAAATTTCAGCCAACAGAATTTGACGAAACCCTTTTAGGAAGCATTAAATATTATGCAACGCAATGTCCAACCAAAAATATACTCTTACCAATACAATTGGATATATGTACAGATTTAGTTCATTATGGGTTTTCAGAAGAAAGTATAGATTATGTCTATAATGCAAATATGATTCATATAAGTCCTTATGAATGTACAATCGGCTTATTTAAAAATGCAGGCTGCTATCTAAAACCTAATGCTTTAATGATCTTATATGGGCCTTTTAGTAAAGATGGAGTAATTACACCTGACAGTAATGTTCAATTTAATGCATCTTTAAAATCTAGGAATCCAGCATGGGGATTAAGAGACATCAGTGAATTAATTAAAATAGCTGCTGATTATAGTCTAACACTCATAGATACAGTAGAAATGCCTGCAAATAATAAAACTTTAATATGGAAAAAGAATTGA
Protein
MSKLKDFSCAFHGNENMANQKLIYPAATRNQEPILQVLKRFVTYDCAEDDSPFFLEVASGSGQHLAHFAPHFPNIKFQPTEFDETLLGSIKYYATQCPTKNILLPIQLDICTDLVHYGFSEESIDYVYNANMIHISPYECTIGLFKNAGCYLKPNALMILYGPFSKDGVITPDSNVQFNASLKSRNPAWGLRDISELIKIAADYSLTLIDTVEMPANNKTLIWKKN

Summary

Similarity
Belongs to the UPF0585 family.
Keywords
Complete proteome   Reference proteome  
Feature
chain  UPF0585 protein CG18661
EMBL
BABH01007917    ODYU01003919    SOQ43280.1    JTDY01009182    KOB64014.1    NWSH01000438    + More
PCG76432.1    GAIX01003861    JAA88699.1    KQ461181    KPJ07599.1    KQ459597    KPI94886.1    KK107144    EZA57601.1    ADTU01005004    GL437497    EFN70364.1    KQ980404    KYN16196.1    KQ982330    KYQ57676.1    LBMM01000101    KMR04954.1    KQ976440    KYM86489.1    GL888175    EGI66053.1    GL446154    EFN88397.1    QOIP01000003    RLU24313.1    KQ414621    KOC67577.1    KZ288253    PBC30950.1    JR049501    AEY60983.1    GBYB01009439    JAG79206.1    GDKW01001432    JAI55163.1    ACPB03015779    GAHY01001835    JAA75675.1    GGFL01001100    MBW65278.1    GGFK01011733    MBW45054.1    GGFK01011454    MBW44775.1    GGFK01011317    MBW44638.1    NNAY01002067    OXU22178.1    AAZX01001184    GFDL01010215    JAV24830.1    GDIQ01216363    JAK35362.1    GBGD01002925    JAC85964.1    GGFL01004927    MBW69105.1    GDIQ01157988    GDIQ01040176    GDIQ01040175    JAN54562.1    GBYB01009438    GBYB01010272    JAG79205.1    JAG80039.1    GDIQ01076016    JAN18721.1    GDIQ01019982    JAN74755.1    GEZM01035637    JAV83145.1    GECL01001831    JAP04293.1    DS232607    EDS43981.1    GEZM01035636    JAV83146.1    CH477322    EAT43604.1    GDIQ01176271    JAK75454.1    GBHO01014397    GBRD01003715    GDHC01020436    JAG29207.1    JAG62106.1    JAP98192.1    AXCN02001996    GDAI01002042    JAI15561.1    PYGN01000163    PSN52412.1    GAPW01004129    JAC09469.1    GDIP01047874    JAM55841.1    GDIP01096060    JAM07655.1    CVRI01000047    CRK97370.1    KK854265    PTY13938.1    GDRN01079440    JAI62403.1    LNIX01000002    OXA60296.1    JXUM01039460    KQ561205    KXJ79348.1    ATLV01010838    KE524620    KFB35724.1    APCN01001666    AJVK01003772    AAAB01008980    EAA14522.5    GBHO01014393    GBRD01003713    JAG29211.1    JAG62108.1    GDIQ01130356    JAL21370.1    GL732641    EFX69143.1    IACF01003328    LAB68947.1    GDIQ01243062    JAK08663.1    NEVH01019388    PNF22515.1    CH963852    EDW75666.2    CM002910    KMY89202.1    GBXI01011649    JAD02643.1    AE014134    ADV36993.1    GEBQ01010217    GEBQ01005969    JAT29760.1    JAT34008.1    KMY89203.1    CH902624    EDV32979.1    CH379062    KRT05048.1    CM000157    EDW88606.2    AJWK01015359    AY119228    CH933807    KRG03038.1    HAEB01016346    HAEC01005634    SBQ62873.1    KPU74224.1    GBXM01010721    JAH97856.1    GECU01036806    JAS70900.1    EAL32892.1   
Pfam
PF06080   DUF938        + More
PF00501   AMP-binding
PF00226   DnaJ
PF12171   zf-C2H2_jaz
Interpro
IPR029063   SAM-dependent_MTases        + More
IPR010342   DUF938       
IPR042099   AMP-dep_Synthh-like_sf       
IPR000873   AMP-dep_Synth/Lig       
IPR013087   Znf_C2H2_type       
IPR018253   DnaJ_domain_CS       
IPR003604   Matrin/U1-like-C_Znf_C2H2       
IPR036869   J_dom_sf       
IPR022755   Znf_C2H2_jaz       
IPR001623   DnaJ_domain       
IPR036236   Znf_C2H2_sf       
SUPFAM
SSF53335   SSF53335        + More
SSF46565   SSF46565       
SSF57667   SSF57667       
Gene 3D

Ontologies

Topology

Length:
226
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01532
Exp number, first 60 AAs:
9e-05
Total prob of N-in:
0.09741
outside
1  -  226
 
 

Population Genetic Test Statistics

Pi
268.435831
Theta
182.022032
Tajima's D
1.510782
CLR
0
CSRT
0.789460526973651
Interpretation
Uncertain
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