SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02781  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003700
Annotation
PREDICTED:_ras_GTPase-activating-like_protein_IQGAP1_[Bombyx_mori]
Full name
Ras GTPase-activating-like protein IQGAP1      
Alternative Name
p195
Location in the cell
Nuclear   Reliability : 3.158
 

Sequence

CDS
ATGTTTGCCGCAAATGTTGACGAAATTCGAATTGGAAAAATTGATGATGGTTCAAGTGATGCAGATGTTCGCAAAACTGGACAGGAGATGGACCTCATAAGACAAAGGACTATTGCTTATGAATATCTTTGTCGTCTTGAAGAAGCGAAGACGTGGTTAGAAGCTTGCCTGAAAGAGAAACTCCCTCCCGCCACTGAATTTGAGGAAAGCTTGCGTAATGGAGTGTATTTGGCCAAGTTGGGAAATTTTATTAGTCCTGAGTCACTTCCTTTAAATAAAATATTTGACATTGATCTTAAGAGATACAAGGTCTTAGGTCTTCAATTTAAACACACTGATAATATTAATCAATTTCTTCAAATACTGAAGAAAACAGAGCTACCCGTAACGTTTCAACCAGAAACGACCGACATTTATGATAAAAAGAACATGCCTCGTGTAATTTATTGCATACATGCTTTAAGTTCGCATCTCTTTAAACTTGGAAAAGCTCCACTTATTCATGACGTGTTTGGCAAAATTGCCTTCACAGACGATGAATTAGACGTCGTGTCAAAGGATTTACAAAAATGTGAACAACCAATGCCAATGTTCCAAAAGATAGGTGGAATTTTATCAATCAATAATAAAGGGGATGGTTCTGTTATGCTTAAAGCTCTTATTGAATTAAACAGATTACTTGATACAGAAAAGTCTATAACGGCTGCGATTCTGAACCCACAGCTAAAGTTGAAGCATGTTCAAAATCGGCTAATAGATGAATACAAAAAAGCTTTACATATTGCCAAGCAAGATAAAATTCAGGCTGCTCATAATCGTTCTCTTAATGATAGCTATTTACCAGACGAATATGATGAACTTTTAACTACGGTAGAAATACAAGGGCACATCACAGCAGTTAATTATAAATATTTATGGAAAAATCTTTGTTCTGCCTCTAAACATAACGATGTCAAGAGCTTACACAAAATCTTTACTGAAGAATGGGTCCATATAAAGGGTTACGACCATCATAATTTAGATTTTTACTGTGATGTAGTTCAAGAGACTATTGAATGTAACAAAGACATTGATGTCGAAAGTGTTCCGAATTGGCATAAAATATTTCAAAACATAATCAATGAAGGAAATCGCAAATCTCTTGAGCACACAGATCATAAAAGCGCTATTGCAAATGTAAATAAAGTGTTGGAAGAGGGTTCTCCGACCGATTTGTATAAAGCATTAATCAATCCTCATTTAGAATTAAACATCAAGGTTGACGAATTTGCTGCTCCTTTGTTGTATGAAGAGATGAGATTGGAGAGATGCGAGTTAGAAAAAAATCTTAATGAAAACGAAATTGCTGCTTCAGTCTCTTATTTATCGGCCGTAGCGACTGTGTCACACGCTGTAGACAGAGGTGATGAATTAGCAGTTTGGAATGCTCTGAATTCGAAACAAATTCAGCTTGAAGGATTGCGAGCTCATTGCAGACGCAGATACCTATCCGCGTTAGCAACCGCTTTACAAATAAAGATAAAAGAACAGTGTGCATGTCCGCTTCTGACTTTTGAAGATATCCATGACACAATTCAAATGGTGAACATGAAAGATGACGAAAACGAAGAGCTGATTCTTGTAATAGACGGTATAAATAAGGCGGTATTGGAGGATGATGTGGAGTCACTGATGATATTATTAAACAGTTCAAGTTTGAAATTGCCTTCCCGTTTGCATAAAGAAGAAAAACATCTATATTTACGCATGCTGAAAAAATTGTTACTAGGAAAAGAATCCCAAAATCTTTGGATCGATGATGTTTTGGATGTAATCAACCAAGTTAATGTAGAGTCATACAAAGTAAAAGAGTTGACTGAGGCTATAGTCCAACTGAATGTAGCTGTGTTGAAAAATAACGTTGATAGTTTTTTTAATACGATCAGAAATCCAGTTTTGGCAATTTCTGATAATGTAGAAGCATCATGTAAGGATGTATATTTTCAAATGTTTTCAAAAGCATTGAAAAAGAAAGGTCAATTTATTTGTCCTTGGATAGTTTGCCACACGGATGTTGGGAACACTGTCTACATAGACGTCGAATCATATACGTATAGCTGGACAACTCCTAAAGACTTCGTACCGTATGCACGATATTTGACTACGAAAGATATCTCTGGAATAGTAGAGAAAACTAATAAACACCACGTAAATAAATACAAACAAACGTTAATAGAAAGATCTGTCGTAAAACTCCAAGCATATTGCAAAGGATATCTGCTTAGGAAACGAATGACTGACAGACTGAAGTTGTTTATGGCAAATGAAGAATACGTTATTAAAATTCAAGCTTGGTGGAGAATGCTGTTGGTTTACAAGCGATACGGGACATTAATAAAAATGAAAACAATTGAAGCAAAATTGAAACGGGAACGCAAACAAAATCCAATGGCATGGTACAAAAGTCAGGAACACAAAATAGTGAAAATTCAAGCAATGTGGAGAGGTCGTCGCGCTCGTCAATGTTTCACTGCTTTATTTCACTCGCGGAATCCACCGCTCAGAATCGTTAAAAAGTTCATTCCATTACTAGATTTCTCGACTGAAGACTACGACAGGGAAATTGAATTACAATCACTGAAATCGGAAGTCGTGCAGTCTATCCGAAAGAATCAGGAGCTATCCAAGCAAATCGATGACATGGATTTAAAAATAGGTCTGCTGGTACAAAACCGTATAGCTTTACAGGACGTTGCGGCATTTGGTCTAAAGTTAAATAATCTAGTCAAACATCATTCGATGACTAAACTTGTCTTTCAAAATCGCCCTGATGGCAAAGGCTCTTTCATGACAGTTACAACAGCCGTTAAAGGCTTAAAATCCCTCACTAAAGAATCCAAAAGACTTTTAGACGGATACCAACATCTGTTCTATGAACTGCAAACAAACCCCACTTACTTGTCCAAATTACTGTTTTGTATACCGCAAAATAAAACTAATTTCTTCTTACAAAACGTCGTACTTAGCCTTTACAACTTTGGGGCTTACACAAGAGATGAGTATCTGCTTCTGAAGCTATTTAGATTTACATTGGAGGAAGAAATAAGTTGTAAGGTTGTTAAACCTTTTGATATTATCTCGTCGACTCCGCTGGTACTAAAAATGGCGGTAAGCCTTTCGAGACAGCTTTCTGGACTGAACAGCCTGCAAACAATTATAGGACCCCTGGTCGAAAAAATGTTAAGGGACAAAGATTTAAATATTGAAACGGGTCCAGTAGAAATCTATAAAGCTTGGAGAAATGAAAACGAGATGAAAACTGGGAAAATATCAAATCTTCCATACTCTGTTACACAAGAAGAAGCACTGACATACCCAGAAGTCAAAGCTAGATTACAAACGGCCCTTGGTCAATTAAAAACGATTGTGACAATATTTCTGGATAAAATAACAAGATCGACGGAGCTTTTACCTTTTTGCATAACGTATATGGCTAGAGTGTTGCACAGAGCTCTAACTACGAAATTTCCGTATACACCAGAAAAAGATATCTTAAAAGTTATCGGTAATTTGATTTACTACCAGTTCTTGAACGCCGCAATAGTAGCTCCCGATGCATTTCATATTGTAAACTTACCGAATGGCTGTGAACTGACCACAGATCAGAGAAAAAACCTCGCCTCTGTTGCGAAAATTTTGCATTTTTCTGCCGCAAAAAAAGGCTTTGGTGAAGAGTCAAGTCACCTGCGTTGCTTAAATCCATTTATCGTCGAATGCCACGAGAAAATGAAGGAGCTATTTAGGCGTTGTTGTCGCGGTCCAACGCTTGAAGAGTACTTTGCTGTTGACGAATATACCGAAGCCACGCTACTTCATCATCCGCATATATGTATAACTGTTCAGGAAATCGTAGACACTCACTCGCTACTGATTGAATACCAAGATATAATAGCACCGGATCCAAGCGATCGTTTAAACGAACTATTGGACGACTTGGGAGAAGTGCCGACCATCGCGCAACTAGCCGCTAGGGACGTGGACGGATCCATGGGAGAGACTATTGAAGAGAATGCTAGACTTGAAGTGTGTTTGGCTCTCGTGAATAAATTTCAAACACCTGCTGATGATATGGCAGATCTGAATAAACTATTTATCAAAACCAAAGAGTTATGTGTCGCCATACTTCCATATTTGAATGGTGAACACTTGCTAGAGGCACTGGTTATCGGTACTACGAAAGAACAGCAGGAGCAATATGCTCAAAAAATACAAAAGCGCATCTACTCCGGACAATCGAAGCAAGACGAAGCCATGACATTGCGAGAGCATATTTCCAAGCTACGTAGGAACTTACAAATGCTTGAAGATGAAGGATACGTCACGAGAGAAGATGGCTATCAAGCGATAGTCACATCCATAGCACTTGATCTCTGTAATAAAAGTAAATATAGGCAGGCCCAAAAACGAGCACTAGCAACACTAACACGTGCTAAACAAAGCCTACTTGAAAAAACTAAATATTATGAAGAAAAATGTAAATCTTATGATGAATACATTAAATCATGTCTTGCTAATCTTCATGCTGGTAAAAGGAGTGTGCACGCGTGCTTACGGAGATCCGGAAAGGATATGCAAAAACTAAAATCGAAATTAACAGTCAAATATTCGGGTGCGAAATTGTTGGAAAGGGGTGTACTATTAGAAATTGACGGACTTTCGCCATCACAGTTCAAAAATGTTCAATTTGAAATAACGCCAACTGATCTTAATGGAGTGTTCACAGTGAAGGGGAAATTCATGGGTATTGAAATGGAATCAATTGACATCGACATACAAGATTTATTGCAAAAACAATATGAAGGCTGTGCAGTTATGGATATGTTCGGTAAAGCTAAAATCAATGTGAACTTATTGATATTCTTGTTAAATAGTAAGTTTTATGGTAAATCCTGA
Protein
MFAANVDEIRIGKIDDGSSDADVRKTGQEMDLIRQRTIAYEYLCRLEEAKTWLEACLKEKLPPATEFEESLRNGVYLAKLGNFISPESLPLNKIFDIDLKRYKVLGLQFKHTDNINQFLQILKKTELPVTFQPETTDIYDKKNMPRVIYCIHALSSHLFKLGKAPLIHDVFGKIAFTDDELDVVSKDLQKCEQPMPMFQKIGGILSINNKGDGSVMLKALIELNRLLDTEKSITAAILNPQLKLKHVQNRLIDEYKKALHIAKQDKIQAAHNRSLNDSYLPDEYDELLTTVEIQGHITAVNYKYLWKNLCSASKHNDVKSLHKIFTEEWVHIKGYDHHNLDFYCDVVQETIECNKDIDVESVPNWHKIFQNIINEGNRKSLEHTDHKSAIANVNKVLEEGSPTDLYKALINPHLELNIKVDEFAAPLLYEEMRLERCELEKNLNENEIAASVSYLSAVATVSHAVDRGDELAVWNALNSKQIQLEGLRAHCRRRYLSALATALQIKIKEQCACPLLTFEDIHDTIQMVNMKDDENEELILVIDGINKAVLEDDVESLMILLNSSSLKLPSRLHKEEKHLYLRMLKKLLLGKESQNLWIDDVLDVINQVNVESYKVKELTEAIVQLNVAVLKNNVDSFFNTIRNPVLAISDNVEASCKDVYFQMFSKALKKKGQFICPWIVCHTDVGNTVYIDVESYTYSWTTPKDFVPYARYLTTKDISGIVEKTNKHHVNKYKQTLIERSVVKLQAYCKGYLLRKRMTDRLKLFMANEEYVIKIQAWWRMLLVYKRYGTLIKMKTIEAKLKRERKQNPMAWYKSQEHKIVKIQAMWRGRRARQCFTALFHSRNPPLRIVKKFIPLLDFSTEDYDREIELQSLKSEVVQSIRKNQELSKQIDDMDLKIGLLVQNRIALQDVAAFGLKLNNLVKHHSMTKLVFQNRPDGKGSFMTVTTAVKGLKSLTKESKRLLDGYQHLFYELQTNPTYLSKLLFCIPQNKTNFFLQNVVLSLYNFGAYTRDEYLLLKLFRFTLEEEISCKVVKPFDIISSTPLVLKMAVSLSRQLSGLNSLQTIIGPLVEKMLRDKDLNIETGPVEIYKAWRNENEMKTGKISNLPYSVTQEEALTYPEVKARLQTALGQLKTIVTIFLDKITRSTELLPFCITYMARVLHRALTTKFPYTPEKDILKVIGNLIYYQFLNAAIVAPDAFHIVNLPNGCELTTDQRKNLASVAKILHFSAAKKGFGEESSHLRCLNPFIVECHEKMKELFRRCCRGPTLEEYFAVDEYTEATLLHHPHICITVQEIVDTHSLLIEYQDIIAPDPSDRLNELLDDLGEVPTIAQLAARDVDGSMGETIEENARLEVCLALVNKFQTPADDMADLNKLFIKTKELCVAILPYLNGEHLLEALVIGTTKEQQEQYAQKIQKRIYSGQSKQDEAMTLREHISKLRRNLQMLEDEGYVTREDGYQAIVTSIALDLCNKSKYRQAQKRALATLTRAKQSLLEKTKYYEEKCKSYDEYIKSCLANLHAGKRSVHACLRRSGKDMQKLKSKLTVKYSGAKLLERGVLLEIDGLSPSQFKNVQFEITPTDLNGVFTVKGKFMGIEMESIDIDIQDLLQKQYEGCAVMDMFGKAKINVNLLIFLLNSKFYGKS

Summary

Description
Plays a crucial role in regulating the dynamics and assembly of the actin cytoskeleton. Binds to activated CDC42 but does not stimulate its GTPase activity. It associates with calmodulin. Could serve as an assembly scaffold for the organization of a multimolecular complex that would interface incoming signals to the reorganization of the actin cytoskeleton at the plasma membrane. May promote neurite outgrowth (PubMed:15695813). May play a possible role in cell cycle regulation by contributing to cell cycle progression after DNA replication arrest (PubMed:20883816).
Plays a crucial role in regulating the dynamics and assembly of the actin cytoskeleton. Binds to activated CDC42 but does not stimulate its GTPase activity (PubMed:16968698). It associates with calmodulin. Could serve as an assembly scaffold for the organization of a multimolecular complex that would interface incoming signals to the reorganization of the actin cytoskeleton at the plasma membrane. May promote neurite outgrowth. May play a possible role in cell cycle regulation by contributing to cell cycle progression after DNA replication arrest.
Subunit
Interacts with CDC42; the interaction is demonstrated with IQGAP1 in GTP-bound and in nucleotide-free state (PubMed:15355962). Interacts with RAC1 (PubMed:15355962). Does not interact with RHOA. Interacts with TSG101 (PubMed:17853893). Interacts with PAK6 (PubMed:18642328). Interacts with TMEM14B; this interaction increases IQGAP1 phosphorylation and induces its nuclear translocation (PubMed:29033352).
(Microbial infection) Interacts with ebolavirus vp40.
Interacts with CDC42; the interaction is demonstrated with IQGAP1 in GTP-bound and in nucleotide-free state (PubMed:16968698). Interacts with RAC1 (By similarity). Does not interact with RHOA (By similarity). Interacts with TSG101 (By similarity). Interacts with PAK6 (By similarity).
(Microbial infection) In case of infection, interacts with S.typhimurium protein sseI (PubMed:19956712).
Keywords
3D-structure   Acetylation   Calmodulin-binding   Cell membrane   Complete proteome   Cytoplasm   Direct protein sequencing   Host-virus interaction   Membrane   Nucleus   Phosphoprotein   Polymorphism   Reference proteome   Repeat  
Feature
chain  Ras GTPase-activating-like protein IQGAP1
sequence variant  In dbSNP:rs12324924.
EMBL
BABH01007921    BABH01007922    BABH01007923    ODYU01006495    SOQ48381.1    NWSH01000438    + More
PCG76435.1    KQ459597    KPI94902.1    AGBW02012631    OWR44686.1    KQ461181    KPJ07614.1    JTDY01002375    KOB71549.1    KZ288203    PBC33394.1    GBYB01008371    JAG78138.1    KQ434977    KZC12883.1    NNAY01000305    OXU29340.1    KQ414617    KOC68158.1    KQ435793    KOX74201.1    GL888679    EGI58500.1    GL445900    EFN88876.1    GECU01028831    JAS78875.1    ADTU01027863    KQ981993    KYN31075.1    GL443520    EFN61975.1    GEDC01011736    JAS25562.1    KQ982522    KYQ55474.1    KQ976730    KYM76452.1    QOIP01000014    RLU14769.1    KK107405    EZA51229.1    KQ977505    KYN02278.1    GL768112    EFZ12213.1    GGMR01017242    MBY29861.1    KK853230    KDR09638.1    ABLF02017639    ABLF02017641    KQ419180    KOF84379.1    GDRN01069856    JAI63986.1    GGMS01003584    MBY72787.1    LSYS01007908    OPJ70224.1    NEDP02003800    OWF47735.1    BC139731    AAI39732.1    CH471101    EAX02103.1    L33075    D29640    BC151834    CABD030097847    CABD030097848    CABD030097849    CABD030097850    CABD030097851    AACZ04026168    AACZ04026169    GABC01000170    GABD01000007    GABE01000270    NBAG03000308    JAA11168.1    JAA33093.1    JAA44469.1    PNI42846.1    NDHI03003407    PNJ62145.1    ADFV01044654    ADFV01044655    ADFV01044656    ADFV01044657    ADFV01044658    ADFV01044659    ADFV01044660    HACG01042308    CEK89173.1    ABGA01009773    ABGA01009774    ABGA01009775    ABGA01009776    ABGA01009777    ABGA01009778    ABGA01009779    ABGA01009780    ABGA01009781    ABGA01009782    KK717966    KFO53415.1    AJFE02022761    AJFE02022762    AJFE02022763    AJFE02022764    AJFE02022765    AJFE02022766    AJFE02022767    AGTO01022091    AKCR02000033    PKK25461.1    AQIB01128821    AQIB01128822    AQIB01128823    AQIB01128824    AQIB01128825    AQIB01128826    AQIB01128827    AQIB01128828    AQIB01128829    AQIB01128830    JU336926    JU477661    JV048590    AFE80679.1    AFH34465.1    AFI38661.1    BC170181    CM004470    AAI70181.1    OCT89671.1    AQIA01063766    AQIA01063767    AQIA01063768    AQIA01063769    AQIA01063770    AQIA01063771    AHZZ02031558    AHZZ02031559    AHZZ02031560    JSUE03039057    JSUE03039058    JSUE03039059    JW861392    AFO93909.1    KL488969    KFO10570.1    KL343894    KFZ54608.1    KB745374    EOA93825.1    MUZQ01000379    OWK52036.1    AAWZ02033960    KL247037    KFV15462.1    KK733882    KFR00977.1    KN126163    KFU87108.1    KL672868    KFW87108.1    KZ506221    PKU40697.1    ABQF01056401    ABQF01056402    ABQF01056403    KK501513    KFP15676.1    KL224907    KFW65427.1    KL226089    KFM08276.1    AANG04002993    KK605741    KFW09011.1    KL869714    KGL85852.1    KL217594    KFO96636.1    AF240630    AC109257    AC127594    CH466543    ADON01140653    AK129044    BAC97854.1    AABR07004428    CH473980    EDM08655.1    CM004471    OCT86880.1    AADN05000047    AGTP01016423    AGTP01016424    AGTP01016425    AGTP01016426    BC046385    AAH46385.1   
Pfam
PF00307   CH        + More
PF00612   IQ
PF00616   RasGAP
PF03836   RasGAP_C
PF01286   XPA_N
PF05181   XPA_C
Interpro
IPR027417   P-loop_NTPase        + More
IPR001936   RasGAP_dom       
IPR000593   RasGAP_C       
IPR008936   Rho_GTPase_activation_prot       
IPR000048   IQ_motif_EF-hand-BS       
IPR001715   CH-domain       
IPR036872   CH_dom_sf       
IPR022658   XPA_CS       
IPR009061   DNA-bd_dom_put_sf       
IPR022652   Znf_XPA_CS       
IPR000465   XPA       
IPR037129   XPA_sf       
IPR022656   XPA_C       
IPR001202   WW_dom       
IPR023152   RasGAP_CS       
SUPFAM
SSF48350   SSF48350        + More
SSF52540   SSF52540       
SSF47576   SSF47576       
SSF46955   SSF46955       
Gene 3D
PDB
3FAY     E-value=5.80415e-101,     Score=945

Ontologies

Topology

Subcellular location
Cell membrane   Subcellular distribution is regulated by the cell cycle, nuclear levels increase at G1/S phase (PubMed:20883816).   With evidence from 21 publications.
Nucleus   Subcellular distribution is regulated by the cell cycle, nuclear levels increase at G1/S phase (PubMed:20883816).   With evidence from 21 publications.
Cytoplasm   Subcellular distribution is regulated by the cell cycle, nuclear levels increase at G1/S phase (PubMed:20883816).   With evidence from 21 publications.
Length:
1643
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0704799999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00047
outside
1  -  1643
 
 

Population Genetic Test Statistics

Pi
191.033237
Theta
207.43785
Tajima's D
0.278927
CLR
0.680556
CSRT
0.451277436128194
Interpretation
Uncertain
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