Silkworm Genome Informatics Database

Gene

KWMTBOMO02779

Pre Gene Modal

BGIBMGA003495

Annotation

Protein_naked_cuticle-like_[Papilio_xuthus]

Location

Bomo_Chr5(+):10696330-10703821 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.934

CDS

ATGACGTGCTACGAAACGTTGAGAGCTCCGGCACCCGCCGCGGACGCCCCCATGGCGCACCACTTTGTCAAGTGGTGGCGCAACAAGTTTAGAAATGGCTATAAGAAATTCAGTCTCGGAATGGAAGGTGACCGGACGGACACTGAAGAACTTGTCGGCCGAGCTACATCACAGAGCTCAGCGCCACCTGATCTACTACCAAGTGAGGCGCGAGCTTTGTTACAGCCGGTTATACCTCCTCCGCCACCGCCCCGTTTGATGCGACCTACAAATGAACCTTCCCACAAACCGCCATCGTACCCCGCTCCAGAGAACCACGAAGATAATCCTAGAATGCGATTTGAGGAATTGACCTGTGATGTAGAACTACAACATCCGGAACCTTCTAAGCAACAACCGTTACAATTTTCATTTACGCTTTACGATCTTGATGGACACGGGAGAATGACTAAAGATGACATAGCTGGAATTGTGTCAACAATATACGAATCCATCGGGAAATCGGTTACGGTACCCCATTATGGATCTAAAACCATACAAGTGCGGTTAACGGTCGTACCAGAGAACGGTAAATCACGCAGTCAACGAGAACGAAGAGAGGCGCAAAGGCGCCGGCGGAAAGACGTTCCGATGTCTGTTAATGTTACGCAGCCAGACTGCGCACCCCACAGCGACGACGACCAAAGAGACAGATTATCACCGGATGACGATTTGTCTTCAAAGTCGTCGTGTTCGGGCGAGCACAGGACAACTGTTCCCGATCGTAGACCTACAGCGGTCATTCATCCACGTCACCACCGCCATCCACCACCACGCAGGGAACATCGCGAACGCAAGCACACTAAAAAACGTTCTGGAAGCCTACAGAGAAGAGAGTTGCTCGAAATCATTCAGGCTAATATGGAGAAGAACCATTTGAGCTTTCAAGCCTCAAGGAAGCCCTGCGAATCTATTGGCAATGATGACGACTACAACAAATATCAGAAAGTACGGAAGAGATCGTATACTGTTAGCGAGAAACCAACGAATGCATTCCAAAAAACGACAACGGACTCAAACGGCAACGGTTATCTGGATTTGGCCAGCGGCGGCGACTCTCACTTGTGTAGATACGATCGTTATTTGCATGCAGTGATATCTTAG

Protein

MTCYETLRAPAPAADAPMAHHFVKWWRNKFRNGYKKFSLGMEGDRTDTEELVGRATSQSSAPPDLLPSEARALLQPVIPPPPPPRLMRPTNEPSHKPPSYPAPENHEDNPRMRFEELTCDVELQHPEPSKQQPLQFSFTLYDLDGHGRMTKDDIAGIVSTIYESIGKSVTVPHYGSKTIQVRLTVVPENGKSRSQRERREAQRRRRKDVPMSVNVTQPDCAPHSDDDQRDRLSPDDDLSSKSSCSGEHRTTVPDRRPTAVIHPRHHRHPPPRREHRERKHTKKRSGSLQRRELLEIIQANMEKNHLSFQASRKPCESIGNDDDYNKYQKVRKRSYTVSEKPTNAFQKTTTDSNGNGYLDLASGGDSHLCRYDRYLHAVIS

Uniprot

H9J1V8 A0A2H1W5L5 A0A2A4JWM9 A0A0L7L8K3 J7G5U1

Pubmed

19121390 26227816

EMBL

BABH01007923 ODYU01006495 SOQ48379.1 NWSH01000438 PCG76427.1 JTDY01002225 + More
KOB71858.1 JX112034 AFP57440.1

Proteomes

UP000005204 UP000218220 UP000037510

PRIDE

H9J1V8

Interpro

IPR040140   Nkd-like        + More
IPR011992   EF-hand-dom_pair
IPR002048   EF_hand_dom

SUPFAM

SSF47473 SSF47473

ProteinModelPortal

H9J1V8 A0A2H1W5L5 A0A2A4JWM9 A0A0L7L8K3 J7G5U1

PDB

5AFP E-value=0.00478522, Score=94

KEGG

101742309 K03213 naked cuticle | (RefSeq) protein naked cuticle homolog

PATHWAY

04310 Wnt signaling pathway - Bombyx mori (domestic silkworm)

GO

GO:0030178 GO:0005509 GO:0005737 GO:0006629 GO:0016021 GO:0016627 GO:0004889 GO:0005216 GO:0045211 GO:0006281 GO:0048384

PANTHER

PTHR22611

Length:

380

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00254

Exp number, first 60 AAs:

0.00037

Total prob of N-in:

0.01705

outside

1 - 380

Pi

265.450951

Theta

22.427744

Tajima's D

-1.860484

CLR

100.282553

CSRT

0.0208489575521224

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics