Gene

KWMTBOMO02766

Pre Gene Modal

BGIBMGA003488

Annotation

PREDICTED:_patj_homolog_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr5(+):10381041-10396951      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.151

CDS

ATGCATTTGGGCGTGAACGTCTCAAATGCATTACAGCAATTGGAAAGTGTGAAAGCTGCTGTGGACCAGAGCAATGATCCCAAGCTTAAAGCTGCAACCAGTGATGATTTGAACATGCTAATAAGTTTATTAGAGAGTCCCATATTACGAAGTATTACTACACTTCATGACTCTGTGGGCATGCTTGCAACTCAGGTTGCACATCACCCATCAATTTTACCTGGAGATTTTGATATTACTCCTGCTGGTGACTTGGCATTACAAACAAGAAATTTGTATGGAAATCAAGAGGGTGAAGAGGAGCAAAGGGTGCCACAGGTCTCACCTCCACATAGTATGGAGTTTGGATCTGATAATGAACATATTCTTGGACTTGATAGTGGCTCTGTTGACTCTAACATGTCTCCTAAACAAAGTCGTGGCTTATTAGATTTGTCTCGTAATGATGATTCTTTAGCATCTACCAATCACAACGTAGTAGCAGGGGACTGGGCACAAGTTGAAATTATAAATCTTGTAAATGATGGAACTGGCCTTGGATTTGGTATTATAGGTGCTAGAACAAGTGGTGTCATTGTAAAGACGATACTAGCAGGTGGTGTAGCTGATCGCGATGGCCGACTAAAATCTGGAGATCACATTCTACAGATTGGAGATGTAAGCCTTATGGAGATGGGTTCCGAGCAAGTAGCTGGTGTGCTACGTGCGTCCGGTAGTCGTGTGAGGCTCGTCGTGGCGCGAGCAGTGGATCCGGCGGCCTTGCATGCGTCACCCGCTCCCGTCGTGCCTGCCAGGCTTTTGTCAGACCCCGAATCGCTGGATCGCTATCTCATGGAAGCTGGTTTTGAGCAAGTGTTCCATACGCAGCCTGTGCCTGTCAGCTCCACTTCGACGAGATTTGTATTTGACAATCCCATAACACCCCCTCCAGATTCAGATGCTGAATCACCAGAAGTTGATAGATTCACAGTTCAACTGAAGAAAGACGAGAACGGCTTAGGGATTACTATTGCAGGTTATGTTTGCGAAAAGGAGGAGCTGTCAGGTATATTTGTGAAGTCGGTGACTCCGGGGAGCGCTGCAGCGTTGAGCGGAATGGTGAGGGTCAATGACCGCATCGTTGCCGTCGATGGCGTCTCCCTCGCAGGGAAATCCAACCAGCGCGCTGTGGACGCCCTGAAACAGAGTCGCAACGTTGTCACGCTAGAACTAGAAAGATACCTGCGTGGTCCGAAATATGAGCAACTGCAGCAAGCGATAGCGGCGGGCGAGGCGGCCGCCCCCCCTCCCCCGCCCAACCCGTTCCTGCACATGCACCGTCCCGACGCACCTTCTCCTGAAATAGAAATACAGCTCTCCAACCTCCAAATAACGGATAACGGCACAGATGACGCTGTGCCTCTAACTCGCAGCAGTCCTCCGGCGACTGCACTGCGTCCGGCACCAGCGTTCGAGATGCCACGGACTCCTGAACAAAAAGAAGCGATAAGAAGGAAATGGCAGGCTATATTAGGCGAGGACGTGGAGATAGTGGTGGGCGTGGTGGTGCGCGGTGGGGGTGGTCTGGGCATTTCGCTAGAAGGCACCGTGGACGTGGAGGGGGGGCGCGAGGTGAGGCCGCATCACTACGTGCGCTCCGTGCTGCCCGAGGGGCCCGTGGGCCGCGCCGCCGTGCATCGCCCCGGCGACGAGCTGCTCGAAGTGAACGGTCATCGGCTCCTGGGCATGAACCACTTAGAAGTGGTGTCAATTCTGAAGGAATTATCGAGTGAAGTCTGCATGGTGTGTGCGAGACCTCGACCTGCGCCCCCTCTCGACCTAGCGCCGCCTGCCACAACATTAGTGAAGGCGAAATCGGACGGTAGCCTGGCGGGTGCGGGTGCTGAGGAAGGCGGGTCGCTGTCCGCCGCTGGGAAAGTTCGTTCCCGGAGTCTCGAACCACTAACCGGACTTGCTATGTGGTCTTCTGAACCCCAGATAATAGAGCTAGTGAAAGGCGAGCGTGGTCTGGGGTTCTCGATCCTGGACTACCAGGACCCGCTGCGGCCCGCGCACACGCTCGTCGTCATCCGCTCGCTGGTGCCGGGCGGCGTGGCGCAGCAGGACGGCCGCCTCATACCCGGGGACAGGCTGCTCTTCGTTAACGATCAGAATCTTGAAAATGCGAGTCTAGAGCAAGCGGTGGCGGCGCTGAAGGGCGCGCCCCGAGGAGTGGTCCGCATCGGGGTGGCCAAGCCTCTACCGCTGGCCGACGCGCCGCCGCCGCTGCCCACCACGCCGCCCCCCAACACCTTGAGCTATAAAATATTTACTATGAACTAG

Protein

MHLGVNVSNALQQLESVKAAVDQSNDPKLKAATSDDLNMLISLLESPILRSITTLHDSVGMLATQVAHHPSILPGDFDITPAGDLALQTRNLYGNQEGEEEQRVPQVSPPHSMEFGSDNEHILGLDSGSVDSNMSPKQSRGLLDLSRNDDSLASTNHNVVAGDWAQVEIINLVNDGTGLGFGIIGARTSGVIVKTILAGGVADRDGRLKSGDHILQIGDVSLMEMGSEQVAGVLRASGSRVRLVVARAVDPAALHASPAPVVPARLLSDPESLDRYLMEAGFEQVFHTQPVPVSSTSTRFVFDNPITPPPDSDAESPEVDRFTVQLKKDENGLGITIAGYVCEKEELSGIFVKSVTPGSAAALSGMVRVNDRIVAVDGVSLAGKSNQRAVDALKQSRNVVTLELERYLRGPKYEQLQQAIAAGEAAAPPPPPNPFLHMHRPDAPSPEIEIQLSNLQITDNGTDDAVPLTRSSPPATALRPAPAFEMPRTPEQKEAIRRKWQAILGEDVEIVVGVVVRGGGGLGISLEGTVDVEGGREVRPHHYVRSVLPEGPVGRAAVHRPGDELLEVNGHRLLGMNHLEVVSILKELSSEVCMVCARPRPAPPLDLAPPATTLVKAKSDGSLAGAGAEEGGSLSAAGKVRSRSLEPLTGLAMWSSEPQIIELVKGERGLGFSILDYQDPLRPAHTLVVIRSLVPGGVAQQDGRLIPGDRLLFVNDQNLENASLEQAVAALKGAPRGVVRIGVAKPLPLADAPPPLPTTPPPNTLSYKIFTMN

Uniprot

A0A2A4K1J6   A0A2H1WVM7   H9J1V1   A0A212ET84   A0A194PUS4   A0A194QVL6   + More
A0A1Y1MNC1   D6W6M5   A0A1J1I5Y6   A0A1W4WZU9   E0VGE8   A0A146LAK9   A0A146KZ93   A0A1B6ELN7   A0A2J7R5D2   A0A2J7R5D3   A0A0P4VIU4   A0A023F3W4   A0A195BWA7   A0A0M8ZVG3   A0A151JQU8   A0A1B6GQS6   A0A154PNZ1   A0A3L8DGH0   A0A026X228   A0A232FA68   E2B674   A0A0A9YHT4   A0A2J7R5D1   A0A0L7R1E0   A0A2J7R5D6   F4WWZ8   A0A151WMY2   A0A224X4S0   A0A087ZV81   T1INI3   A0A151IBX1   A0A1Y1M2Z1   A0A2W1BUE1   A0A2A4JGR2   A0A0T6ASQ8   A0A2H1V279   A0A195F8V7   A0A0K2SZ76   E9INJ5   A0A2H5BFC6   H3AIS3  

Pubmed

19121390    22118469    26354079    28004739    18362917    19820115    + More
20566863    26823975    27129103    25474469    30249741    24508170    28648823    20798317    25401762    21719571    28756777    21282665    29228898    9215903   

EMBL

NWSH01000300    PCG77633.1    ODYU01011401    SOQ57125.1    BABH01007952    BABH01007953    + More
AGBW02012631    OWR44702.1    KQ459597    KPI94885.1    KQ461181    KPJ07596.1    GEZM01027922    JAV86578.1    KQ971307    EFA10862.2    CVRI01000040    CRK94996.1    DS235140    EEB12454.1    GDHC01014477    JAQ04152.1    GDHC01018599    JAQ00030.1    GECZ01030919    JAS38850.1    NEVH01006994    PNF36041.1    PNF36042.1    GDKW01001773    JAI54822.1    GBBI01002582    JAC16130.1    KQ976396    KYM92914.1    KQ435830    KOX71767.1    KQ978619    KYN29768.1    GECZ01004998    JAS64771.1    KQ435007    KZC13605.1    QOIP01000008    RLU19272.1    KK107034    EZA62056.1    NNAY01000618    OXU27370.1    GL445930    EFN88767.1    GBHO01012413    GBRD01008386    JAG31191.1    JAG57435.1    PNF36039.1    KQ414668    KOC64659.1    PNF36040.1    GL888417    EGI61241.1    KQ982934    KYQ49168.1    GFTR01008919    JAW07507.1    JH431176    KQ978076    KYM97225.1    GEZM01041885    GEZM01041880    JAV80119.1    KZ149945    PZC76817.1    NWSH01001542    PCG70908.1    LJIG01022905    KRT78129.1    ODYU01000125    SOQ34374.1    KQ981727    KYN37040.1    HACA01001326    CDW18687.1    GL764306    EFZ17853.1    MG197681    AUG84431.1    AFYH01165142    AFYH01165143    AFYH01165144    AFYH01165145    AFYH01165146    AFYH01165147    AFYH01165148    AFYH01165149    AFYH01165150    AFYH01165151   

Proteomes

UP000218220    UP000005204    UP000007151    UP000053268    UP000053240    UP000007266    + More
UP000183832    UP000192223    UP000009046    UP000235965    UP000078540    UP000053105    UP000078492    UP000076502    UP000279307    UP000053097    UP000215335    UP000008237    UP000053825    UP000007755    UP000075809    UP000005203    UP000078542    UP000078541    UP000008672   

PRIDE

H9J1V1   

Pfam

PF00595   PDZ        + More
PF09045   L27_2
PF16667   MPDZ_u10

Interpro

IPR001478   PDZ        + More
IPR036034   PDZ_sf       
IPR004172   L27_dom       
IPR036892   L27_dom_sf       
IPR015132   L27_2       
IPR032078   MPDZ       

SUPFAM

SSF50156   SSF50156        + More
SSF101288   SSF101288       

ProteinModelPortal

A0A2A4K1J6   A0A2H1WVM7   H9J1V1   A0A212ET84   A0A194PUS4   A0A194QVL6   + More
A0A1Y1MNC1   D6W6M5   A0A1J1I5Y6   A0A1W4WZU9   E0VGE8   A0A146LAK9   A0A146KZ93   A0A1B6ELN7   A0A2J7R5D2   A0A2J7R5D3   A0A0P4VIU4   A0A023F3W4   A0A195BWA7   A0A0M8ZVG3   A0A151JQU8   A0A1B6GQS6   A0A154PNZ1   A0A3L8DGH0   A0A026X228   A0A232FA68   E2B674   A0A0A9YHT4   A0A2J7R5D1   A0A0L7R1E0   A0A2J7R5D6   F4WWZ8   A0A151WMY2   A0A224X4S0   A0A087ZV81   T1INI3   A0A151IBX1   A0A1Y1M2Z1   A0A2W1BUE1   A0A2A4JGR2   A0A0T6ASQ8   A0A2H1V279   A0A195F8V7   A0A0K2SZ76   E9INJ5   A0A2H5BFC6   H3AIS3  

PDB

2DLU     E-value=6.9451e-24,     Score=277

KEGG

101743997    K06095 multiple PDZ domain protein | (RefSeq) patj homolog

PATHWAY

04391    Hippo signaling pathway - fly - Bombyx mori (domestic silkworm)

GO

GO:0016021   GO:0005515   GO:0008270   GO:0004190   GO:0006508   GO:0004889   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

Length:

773

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0323100000000002

Exp number, first 60 AAs:

0.00075

Total prob of N-in:

0.00147

outside

1  -  773

 

 

Pi

251.254328

Theta

180.208689

Tajima's D

1.31475

CLR

0.045423

CSRT

0.742012899355032

Interpretation

Uncertain