SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02764
Annotation
PREDICTED:_zinc_finger_protein_592-like_[Amyelois_transitella]
Location
Bomo_Chr5(-):10366283-10372170      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.077
 

Sequence

CDS
ATGGGTACTACAGATTCTCACAATGATAGACTGAGTATAAAAAACATGATTTTCACAAAAGCTTTACCAAATTACACAATCCCAGTACCAATAACTGGCCACAAAGTATTTGGGTGTACTGATTGTGGAGACAAATTCGTCTTTGAATCCAGCTATAATGATCACATCAATCGAAGATCTGTCCAAATCAGTTACATGTGTCGTCATTGTGGTTTTCCCAAAATATTCTACAATAGATGCAATTTACTATTTCATATACGTTCGCATTCATTTAAAACAGCTACGATAAATGTAACAGACTTGAGAATCGATCCGTTACCCCTTTCTTTTTATAATATGGATCTGATTAAAACACAAGGGAGTGACAAGCCCGACCAAGTTACACAACCAAACCCACGTAAACAATGTGTCGTACTAAATACATGTTTTGAATGCAAGAAGAATATTTCCATGGCGAATTCCGCGTATAAAGACCGCGCCAAACATTTTATGGAATTTACTAATGAAACTTACACTTGTCCAATTTGCCTTTTCACTTTGCCAACTGTTTGTGGCCTTAAAGCACATCTACGTCTGCATTTAAAAAGTCCTCCCTTTTACTGTCCAGAATGCGGTATTCATATCTCAAACAAAAACGTGAACTATCCTTACAACCATGACTGCGAGGGATTTAAAATGATAAGAGCGACCGCTAGACTGCAGTGTCCAGTGACCAAATGTAATCTTTTTCATCCAAACGACTTTAAACAACACATGAAACAAACTCATTTAAAAAAAGTTTATAAATGTCAATTTTGTGTTGTGGCATGCTTTAATGAAGTAACTATGGCCAAACATCTAAAGATCCACAACATGGATAATAAGGCATTAATATTTTATCAATGTGAACTGTGTCCAGGTAGACTGGTACTTCATAATCTAATAGAAAGTCATTTAGGGAATCACATTCAGAACAATGTCTATCCATGTTGGACTTGTGGCGCTGTTTGCAATGACGCAATTGCTTTAATTAATCACTACACAAGGAAACATAATGATAAGGCACCGAATATTGCAAAAATAGTAGCTTCAGTCATTAATGAAACTAGAACACAACTAGGAAGTCATCGAATATATCGCGTAGTAAAAAAATGTGACCATTGCCACAGAAGTTTCATTTACAAATGTCAATATGATGAAATACCGATTCTACCAAATTTGTGTCCATATAAATGCACTAAAAGCTTAAAGATGCAATCGCAAAATACTGATTCAGACAATGATGGTAATTTAATCTGCTACATGTGCAAAATGGTTATATCTGAAGATTGGAAGCAAATTAAAAAACATTACTCGATTCATCACAATAACATTAGATGCTTGGATCTTAAAATAGATCTGCCTCGCATAGATTTAGGCAAGTATTTAAAGAAAAGGAGCTTGAAGCAGACGTCTAATAAAGAAAAGTCAAACCCCAGGATTAAAAGAAGCAAACGCCTAGGAATGAAAATGACCAAAAAAAGAGTTTTCAAAAGCAGTTATGGATGTAACATGTGTAGTGACAAGTTTGAAAATAAAAACCTCTTAGAAAATCACCTAAAACTTCATAGAGATACTCTTATGGCATACCAATGTATGGAATGTGGACAAAGTTTTGCCATGAAACCATCTTTCTCAACACATTTGTTACTGGAACACAAAATAATGAATGTTGACGATTATATTCAAAACAAAAAGTGCTTTAATGGAGATGCATTAGTAACACAGCAAATGAACGTCCCCTACGAAGAGCCATTTTCAGAAAACCAGTGCAAAATTTGCAAAACTCTGTTTGAAAGTAAAGAAATTTTGGAGAAACATCAATGCTCACAGTCTGGTAGTCTTAGTCAAAGATAA
Protein
MGTTDSHNDRLSIKNMIFTKALPNYTIPVPITGHKVFGCTDCGDKFVFESSYNDHINRRSVQISYMCRHCGFPKIFYNRCNLLFHIRSHSFKTATINVTDLRIDPLPLSFYNMDLIKTQGSDKPDQVTQPNPRKQCVVLNTCFECKKNISMANSAYKDRAKHFMEFTNETYTCPICLFTLPTVCGLKAHLRLHLKSPPFYCPECGIHISNKNVNYPYNHDCEGFKMIRATARLQCPVTKCNLFHPNDFKQHMKQTHLKKVYKCQFCVVACFNEVTMAKHLKIHNMDNKALIFYQCELCPGRLVLHNLIESHLGNHIQNNVYPCWTCGAVCNDAIALINHYTRKHNDKAPNIAKIVASVINETRTQLGSHRIYRVVKKCDHCHRSFIYKCQYDEIPILPNLCPYKCTKSLKMQSQNTDSDNDGNLICYMCKMVISEDWKQIKKHYSIHHNNIRCLDLKIDLPRIDLGKYLKKRSLKQTSNKEKSNPRIKRSKRLGMKMTKKRVFKSSYGCNMCSDKFENKNLLENHLKLHRDTLMAYQCMECGQSFAMKPSFSTHLLLEHKIMNVDDYIQNKKCFNGDALVTQQMNVPYEEPFSENQCKICKTLFESKEILEKHQCSQSGSLSQR

Summary

Uniprot
A0A2A4K0T9   A0A2H1WVN0   A0A1E1VZ58   A0A0L7KN66   A0A194PPI1   A0A087TA65   + More
A0A1Y1LKZ0   A0A3B3X3B0   A0A096MH24   A0A3B3BII4   A0A3P9I6P9   A0A3N0YR40   A0A3P9KNA2   A0A139WN43   A0A1S3KPQ9   A0A3B5B345   A0A3B4W996   A0A3P8TLC9   A0A2I4AU61   N6T4S1   A0A3B4FY67   A0A3P8QJE2  
Pubmed
26227816    26354079    28004739    29451363    17554307    18362917    + More
19820115    23537049   
EMBL
NWSH01000300    PCG77636.1    ODYU01011401    SOQ57123.1    GDQN01011113    JAT79941.1    + More
JTDY01008445    KOB64565.1    KQ459597    KPI94883.1    KK114248    KFM62004.1    GEZM01052691    JAV74319.1    AYCK01006466    AYCK01006467    RJVU01032893    ROL48158.1    KQ971312    KYB29313.1    APGK01052535    KB741213    ENN72613.1   
Proteomes
UP000218220    UP000037510    UP000053268    UP000054359    UP000261480    UP000028760    + More
UP000261560    UP000265200    UP000265180    UP000007266    UP000087266    UP000261400    UP000261360    UP000265080    UP000192220    UP000019118    UP000261460    UP000265100   
Pfam
PF00096   zf-C2H2        + More
PF16622   zf-C2H2_11
Interpro
IPR036236   Znf_C2H2_sf        + More
IPR013087   Znf_C2H2_type       
IPR011990   TPR-like_helical_dom_sf       
IPR041697   Znf-C2H2_11       
IPR001628   Znf_hrmn_rcpt       
SUPFAM
SSF57667   SSF57667        + More
SSF48452   SSF48452       
ProteinModelPortal
A0A2A4K0T9   A0A2H1WVN0   A0A1E1VZ58   A0A0L7KN66   A0A194PPI1   A0A087TA65   + More
A0A1Y1LKZ0   A0A3B3X3B0   A0A096MH24   A0A3B3BII4   A0A3P9I6P9   A0A3N0YR40   A0A3P9KNA2   A0A139WN43   A0A1S3KPQ9   A0A3B5B345   A0A3B4W996   A0A3P8TLC9   A0A2I4AU61   N6T4S1   A0A3B4FY67   A0A3P8QJE2  
PDB
2I13     E-value=3.50571e-05,     Score=115

Ontologies

KEGG
101744280    no KO assigned | (RefSeq) zinc finger protein 624-like
GO
GO:0003676   GO:0003700   GO:0008270   GO:0043565   GO:0005634   GO:0046872   GO:0004190   GO:0006508   GO:0016021   GO:0004889   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

Topology

Length:
624
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.210670000000001
Exp number, first 60 AAs:
0.08725
Total prob of N-in:
0.01227
outside
1  -  624
 
 

Population Genetic Test Statistics

Pi
254.475836
Theta
197.592668
Tajima's D
0.888582
CLR
0.604076
CSRT
0.629168541572921
Interpretation
Uncertain
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