Silkworm Genome Informatics Database

Gene

KWMTBOMO02763

Annotation

PREDICTED:_uncharacterized_RING_finger_protein_C548.05c-like_[Bombyx_mori]

Location

Bomo_Chr5(+):10361301-10362859 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.904

CDS

ATGTCTTTTAGAGACGAAATAATTGATTTGACAGATTCATTTACATTAGCAAACCACTGTGCTCTAGCGGATTTCATTATTGAATTAGATGAAGAATCTTACATTCAAAATGAAACATCTCTTATAAACATAGATTCTTCATTAGAAACAACATCAATAAATAACATTTACAGCATAGATAATAGCCATACTTTGGAAAAAAAAGGAAACAAAAAGAAAGAATCCACATCTACTAAAAAACAAAATAGTCATAGTACATCCTTAAGAAAACCAATTATTGAATCATCAATAAAATTTGGTGACTGTCCAATTTGTTGTGAAGAACTTGGTACAAACCCTTTGGCTTCTACAAAATGTGGACATGTATATTGTCTGAAATGCCTTGAACGCTGCCTCAAAACAGAAAAAAAATGTCCTACCTGTAGAAGAGTATTGAAAGGGAATTATGCATATCATCCTCTATTTTTGGGAAATTCGTAA

Protein

MSFRDEIIDLTDSFTLANHCALADFIIELDEESYIQNETSLINIDSSLETTSINNIYSIDNSHTLEKKGNKKKESTSTKKQNSHSTSLRKPIIESSIKFGDCPICCEELGTNPLASTKCGHVYCLKCLERCLKTEKKCPTCRRVLKGNYAYHPLFLGNS

Uniprot

A0A2A4K042 A0A2A4K163 A0A194QQ25 A0A212ET82 A0A194PQ67 S4PME6 + More
A0A2H1X0U5 A0A1E1VY28 A0A3B6QLV4 M0TLI5 M8BW58 A0A3B6QMN7 A0A287UZ66 F6M732 U4TTI0 A0A287UZ63

Pubmed

26354079 22118469 23622113 22801500 23075845 23537049 + More

EMBL

NWSH01000300 PCG77635.1 PCG77634.1 KQ461181 KPJ07597.1 AGBW02012631 + More
OWR44703.1 KQ459597 KPI94884.1 GAIX01003595 JAA88965.1 ODYU01012546 SOQ58933.1 GDQN01011418 JAT79636.1 KD514020 EMT26068.1 JF727656 AEE81066.1 KB631073 KB631074 ERL84068.1 ERL84077.1

Proteomes

UP000218220 UP000053240 UP000007151 UP000053268 UP000019116 UP000012960 + More
UP000011116 UP000030742

Pfam

PF13639 zf-RING_2

Interpro

IPR001841   Znf_RING        + More
IPR013083   Znf_RING/FYVE/PHD
IPR017907   Znf_RING_CS

Gene 3D

3.30.40.10

ProteinModelPortal

A0A2A4K042 A0A2A4K163 A0A194QQ25 A0A212ET82 A0A194PQ67 S4PME6 + More
A0A2H1X0U5 A0A1E1VY28 A0A3B6QLV4 M0TLI5 M8BW58 A0A3B6QMN7 A0A287UZ66 F6M732 U4TTI0 A0A287UZ63

PDB

5AIU E-value=3.17456e-06, Score=116

KEGG

101739929 K22651 E3 ubiquitin-protein ligase RNF4 [EC:2.3.2.27] | (RefSeq) uncharacterized RING finger protein

GO

GO:0016874 GO:0005515 GO:0008270 GO:0004190 GO:0006508 GO:0016021 GO:0004889 GO:0005216 GO:0045211 GO:0006281 GO:0048384

Length:

159

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00064

Exp number, first 60 AAs:

0.00064

Total prob of N-in:

0.06465

outside

1 - 159

Pi

338.542992

Theta

231.672109

Tajima's D

1.452807

CLR

0.14401

CSRT

0.779761011949403

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics