Gene

KWMTBOMO02760

Annotation

PREDICTED:_uncharacterized_protein_LOC106138993_[Amyelois_transitella]

Location

Bomo_Chr5(-):10225576-10227136      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.483

CDS

ATGCCTCCTAAGAAGAATAATGATAATGACGAAAGAGAAGACGTTGAGGTGCATATCTCGTTTCGTGATTTGGAGCAGTCCATGACACCTTTCACCGGAGATGATACCTACCCGATTTTGGAGTTTTTTGATGAATTTGAAGATGTTGCTGATTTGATGAAGTGGACTAAAGTGGAAAGATTGATCTATGCAAAGAAACTTTTGGGTGGAACAGCAAAGCTATTTTTAAGATCTATTGGTAGAGTTAAAGACTATCCTACTTTGAAGGAAGCCCTTATTGAAGAATTTGGCCCTAAGGTTAATAGTGCTAAGATTCACAAGAAGCTTATTTCACGAAAGATAAAAAATGATGAAACTATACAACAATACTTTTTAGTTATGAAAGAAATAGCATTGCATGGAAGAGTAGATGATGCTGCTTTAATGGAATACGTCATAGATGGTATCAATGATCCTGAATCTAACAAAGCAATTTTATATGGAGCTACAGACTTGAAAGATTTTCGAAAGAAGCTAGACATCTACAGTGATTTTCGAAAGAAGCTGGACGATTACAGTGATATTCGGAAGAAAATGAGTACACAATCATATCACCAGGCAGTTCCGCGAGTAAATGCAGATGCAGGCACATCGCCATCAAGAAAACCGCATTTTAAAAGATGCTATAACTGTGGTGATTTAGACCATCAATCCTCCTGTTGTACAAAGGGCATTAAATGCTTTAAGTGTAATGAATTCGGTCACAAGGGAAACGAATGTAAGAATGATGATAAAAAGTCTTTAATTATTCAGAAGAAAAACGAAGAAGAAAAAATCCCTTACAAGAAAGTGTTATTGAATGGAACAGAGATGGTGGCTTTTATCGATACAGGTAGTGACGCGAACCTTATTATACAATCAGAATTTGAAAAAATTGAAAATAATATCCAACATTATGACAAGAATTCAGAAGTTCGTCTTACGGGTATTGCTAACAAAGAAGTACTTATCAAAGGTGTTTTTACTACTCAGCTACAGATTGATGATGCTGTTACGGATATCAAATTTTACATTGTGGAAGATGATATAATACCTGTAAAGCTGATCATTGGCAACCCCATACTGCGTGAATTCGAAGTTAAGTTTACAAGAAATGGTATTGTAATGGAGAAGATACCACTTTGTGCTATTGTTGTTGAGAAGGACGAGGTCAAAGAAGACTACAAGAAATTAAAAAAAGAAGATTACAAGAAGTTAGAGAAAGAAGATTACAAGAAGTTAGAGAAAGAAGACTGCAAGAAGTTGGTTAAAGTACCTTACCAGAATCATTTGACACAAAATAGAATACTGTACAAAGAGAAGAATGGAAGTAGTTTTATCGCTGTACCAAAGGAGATGGATAAAGAAATTAGAAGAGAGAGTTATCCAAGAGGACGACTAAAAGTTGAAGATTGGGAATGGAGGAGGTCCGATACATACGACTAG

Protein

MPPKKNNDNDEREDVEVHISFRDLEQSMTPFTGDDTYPILEFFDEFEDVADLMKWTKVERLIYAKKLLGGTAKLFLRSIGRVKDYPTLKEALIEEFGPKVNSAKIHKKLISRKIKNDETIQQYFLVMKEIALHGRVDDAALMEYVIDGINDPESNKAILYGATDLKDFRKKLDIYSDFRKKLDDYSDIRKKMSTQSYHQAVPRVNADAGTSPSRKPHFKRCYNCGDLDHQSSCCTKGIKCFKCNEFGHKGNECKNDDKKSLIIQKKNEEEKIPYKKVLLNGTEMVAFIDTGSDANLIIQSEFEKIENNIQHYDKNSEVRLTGIANKEVLIKGVFTTQLQIDDAVTDIKFYIVEDDIIPVKLIIGNPILREFEVKFTRNGIVMEKIPLCAIVVEKDEVKEDYKKLKKEDYKKLEKEDYKKLEKEDCKKLVKVPYQNHLTQNRILYKEKNGSSFIAVPKEMDKEIRRESYPRGRLKVEDWEWRRSDTYD

Uniprot

A0A023F013   A0A0J7KQL1   A0A023EYF0   A0A0K8URI1   A0A0J7K9X8   W8BB66   + More
A0A0A1X9Z0   J9JZ77   A0A023EYH9   A0A023EZG2   A0A0A1XB16   J9JNX9   A0A2M3Z2X0   J9JQ65   W8APB2   A0A2M3Z3Z7   A0A212FCW5   A0A151IWN5   A0A0A1XFE9   A0A0K8U2D9   W8C8Q1   X1X261   A0A023EY26   A0A224XHR1   A0A139WKB5   A0A1B0CR74   A0A1B0CKJ5   A0A2M4BFM2   A0A2M4BFF1   A0A2M4BF88   A0A034VAM6   A0A2M4BDJ8   A0A2M4BDL5   A0A0E4G8D8   A0A1S4HEU1   A0A182W804   A0A1L8DIN4   A0A2M4BF33   A0A2M4BF27   A0A0K8V149   A0A1W7R6L8   A0A151II89   W8B0V9   E9IMZ6   A0A0J7K0N3   W8C3C0   A0A2M4AEU2   Q24262   A0A139WB30   A0A151J262   A0A232EEC1  

Pubmed

25474469    24495485    25830018    22118469    18362917    19820115    + More
25348373    12364791    21282665    8055714    28648823   

EMBL

GBBI01004613    JAC14099.1    LBMM01004258    KMQ92652.1    GBBI01004549    JAC14163.1    + More
GDHF01023027    JAI29287.1    LBMM01010976    KMQ87102.1    GAMC01016174    JAB90381.1    GBXI01006173    JAD08119.1    ABLF02014660    ABLF02042774    GBBI01004550    JAC14162.1    GBBI01004551    JAC14161.1    GBXI01005773    JAD08519.1    ABLF02011059    GGFM01002109    MBW22860.1    ABLF02005846    GAMC01020207    JAB86348.1    GGFM01002486    MBW23237.1    AGBW02009151    OWR51557.1    KQ980852    KYN12192.1    GBXI01004632    JAD09660.1    GDHF01031400    JAI20914.1    GAMC01007326    JAB99229.1    ABLF02005127    ABLF02005129    ABLF02007401    GBBI01004477    JAC14235.1    GFTR01008753    JAW07673.1    KQ971327    KYB28419.1    AJWK01024440    AJWK01016333    GGFJ01002620    MBW51761.1    GGFJ01002621    MBW51762.1    GGFJ01002579    MBW51720.1    GAKP01019383    JAC39569.1    GGFJ01001974    MBW51115.1    GGFJ01001952    MBW51093.1    HACL01000135    CFW94429.1    AAAB01008984    GFDF01007768    JAV06316.1    GGFJ01002513    MBW51654.1    GGFJ01002514    MBW51655.1    GDHF01019733    JAI32581.1    GEHC01000930    JAV46715.1    KQ977505    KYN02276.1    GAMC01015907    JAB90648.1    GL764261    EFZ18057.1    LBMM01018094    KMQ83877.1    GAMC01002792    JAC03764.1    GGFK01005990    MBW39311.1    Z27119    CAA81643.1    KQ971376    KYB25116.1    KQ980436    KYN16061.1    NNAY01005459    OXU16662.1   

Proteomes

UP000036403    UP000007819    UP000007151    UP000078492    UP000007266    UP000092461    + More
UP000075920    UP000078542    UP000215335   

PRIDE

Q24262   

Pfam

PF17921   Integrase_H2C2        + More
PF00078   RVT_1
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF00665   rve
PF03732   Retrotrans_gag
PF17919   RT_RNaseH_2
PF02037   SAP
PF14392   zf-CCHC_4
PF00077   RVP
PF09668   Asp_protease
PF12017   Tnp_P_element

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf       
IPR041373   RT_RNaseH       
IPR000477   RT_dom       
IPR021109   Peptidase_aspartic_dom_sf       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR001584   Integrase_cat-core       
IPR041577   RT_RNaseH_2       
IPR005162   Retrotrans_gag_dom       
IPR036361   SAP_dom_sf       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR003034   SAP_dom       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR018061   Retropepsins       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR034145   RP_RTVL-H-like       
IPR021896   Transposase_37       

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098       
SSF57756   SSF57756       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

CDD

cd06095  RP_RTVL_H_like

ProteinModelPortal

A0A023F013   A0A0J7KQL1   A0A023EYF0   A0A0K8URI1   A0A0J7K9X8   W8BB66   + More
A0A0A1X9Z0   J9JZ77   A0A023EYH9   A0A023EZG2   A0A0A1XB16   J9JNX9   A0A2M3Z2X0   J9JQ65   W8APB2   A0A2M3Z3Z7   A0A212FCW5   A0A151IWN5   A0A0A1XFE9   A0A0K8U2D9   W8C8Q1   X1X261   A0A023EY26   A0A224XHR1   A0A139WKB5   A0A1B0CR74   A0A1B0CKJ5   A0A2M4BFM2   A0A2M4BFF1   A0A2M4BF88   A0A034VAM6   A0A2M4BDJ8   A0A2M4BDL5   A0A0E4G8D8   A0A1S4HEU1   A0A182W804   A0A1L8DIN4   A0A2M4BF33   A0A2M4BF27   A0A0K8V149   A0A1W7R6L8   A0A151II89   W8B0V9   E9IMZ6   A0A0J7K0N3   W8C3C0   A0A2M4AEU2   Q24262   A0A139WB30   A0A151J262   A0A232EEC1  

PDB

2LLI     E-value=0.000554339,     Score=103

KEGG

101735568    no KO assigned | (RefSeq) uncharacterized LOC101735568

GO

GO:0015074   GO:0003676   GO:0008270   GO:0004190   GO:0016021   GO:0006313   GO:0004803   GO:0006508   GO:0004889   GO:0005216   GO:0045211   GO:0006281   GO:0048384  

Length:

487

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01202

Exp number, first 60 AAs:

8e-05

Total prob of N-in:

0.00912

outside

1  -  487

 

 

Pi

276.402643

Theta

126.35536

Tajima's D

3.532561

CLR

3.23854

CSRT

0.993800309984501

Interpretation

Uncertain