Silkworm Genome Informatics Database

Gene

KWMTBOMO02757

Pre Gene Modal

BGIBMGA003714

Annotation

PDZ_domain-containing_protein_2_[Operophtera_brumata]

Location

Bomo_Chr5(-):10172966-10175456 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.643

CDS

ATGAGTGACAGGAGGAAAAGTAGTTCCGAGGGACGAAATCGGCGTCCGTACAGCGAGAATGTGGAATTAGACGTACCTTATAGAAATGGCTACAGTAGACTGCCAGCAGATATAAACCAAAAGATATGGGAAGAACCATATCGGCTACCGCGTGTACAATCTCGACAAGATCCTATGCAACAGTTGAAAAAGGGCGTATCGGAGCTAAGAGTGAGCGCGACACCGCGATCAGCTCGTCCACCGCCCGCGCCTCCATCGACAAATCTTCAAAAAAGACCACCAGCCCCAGATCCGCGAGATTTACATCAATTTGAGGTTCGTTTCACAAAATCAGCCGGAGGCAAAGGTTTGGGTTTCAGCATTGTGGGAGGGCGCGATTCTCCTCGAGGCGACATGGGGATATTTGTAAAGACAATTTTTAACAACGGACAAGCCGCCGAATCGGTTCTACGAGAAGGTGATGAGATCATATCTGTTAATGGTAGAGGTACGGCCGGGCTGACGCACGGAGAAGCCATTCGGTTGTTCAAAGACGTCCGCGCCGGGCCCGTGCTTCTGAGAGTAACGCGCAGGGCGCCAGCACGCTGA

Protein

MSDRRKSSSEGRNRRPYSENVELDVPYRNGYSRLPADINQKIWEEPYRLPRVQSRQDPMQQLKKGVSELRVSATPRSARPPPAPPSTNLQKRPPAPDPRDLHQFEVRFTKSAGGKGLGFSIVGGRDSPRGDMGIFVKTIFNNGQAAESVLREGDEIISVNGRGTAGLTHGEAIRLFKDVRAGPVLLRVTRRAPAR

Uniprot

H9J2H7 A0A2A4K1W0 A0A2H1W6N5 A0A0L7LQM5 A0A194RHG6 A0A194PN67 + More
A0A212FIW7

Pubmed

19121390 26227816 26354079 22118469

EMBL

BABH01007971 BABH01007972 NWSH01000300 PCG77622.1 ODYU01006685 SOQ48749.1 + More
JTDY01000311 KOB77752.1 KQ460207 KPJ16765.1 KQ459597 KPI94876.1 AGBW02008321 OWR53669.1

Proteomes

UP000005204 UP000218220 UP000037510 UP000053240 UP000053268 UP000007151 + More

PRIDE

H9J2H7

Pfam

PF00595 PDZ

Interpro

IPR001478 PDZ + More
IPR036034 PDZ_sf

SUPFAM

SSF50156 SSF50156

ProteinModelPortal

H9J2H7 A0A2A4K1W0 A0A2H1W6N5 A0A0L7LQM5 A0A194RHG6 A0A194PN67 + More
A0A212FIW7

PDB

2FNE E-value=3.9634e-13, Score=177

KEGG

101740199 no KO assigned | (RefSeq) inaD-like protein

GO

GO:0005515 GO:0016020 GO:0005230 GO:0006810 GO:0016021 GO:0004889 GO:0005216 GO:0045211 GO:0006281 GO:0048384

Length:

195

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00033

Exp number, first 60 AAs:

0

Total prob of N-in:

0.35346

outside

1 - 195

Pi

243.656294

Theta

199.395053

Tajima's D

0.752099

CLR

0

CSRT

0.589820508974551

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics