Silkworm Genome Informatics Database

Gene

KWMTBOMO02751 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA003484

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_DNA-directed_RNA_polymerase_II_subunit_RPB1_[Bombyx_mori]

Location

Bomo_Chr5(+):10076577-10084711 View in EpiBrowser

Full name

DNA-directed RNA polymerase subunit + More
DNA-directed RNA polymerase II subunit RPB1

Alternative Name

DNA-directed RNA polymerase III largest subunit

Location in the cell

Nuclear Reliability : 3.848

CDS

ATGGCGACGGCGAATGATTCTAAGGCGCCTTTGCGTCAAGTAAAAAGAGTACAGTTTGGAATACTATCCCCAGATGAAATTCGACGCATGTCAGTTACTGAGGGAGGGATTCGATTCCCGGAGACCATGGAAGGTGGAAGACCGAAGCTTGGCGGTCTTATGGATCCTCGACAAGGGGTAATTGACAGAAGCTCACGGTGTCAAACGTGTGCTGGGAATATGACAGAATGTCCAGGACACTTTGGGCACATTGATTTAGCTAAACCAGTTTTCCATATTGGTTTCATAACAAAAACAATAAAAATACTCAGATGTGTATGCTTTTATTGTTCAAAGCTGCTTGTCAGCCCTACAAATCCAAAGATAAAAGAAGTTATAATGAAATCCAAGGGCCAACCCCGCAAACGGTTGACCTATGTTTATGATCTGTGCAAAGGAAAAAATATATGTGAAGGTGGTGAAGACATGGATATTGGGAAAGAAGGTGAAGAAGGTAAAAGAGGATCTGGTCATGGTGGTTGTGGGCATTATCAACCCTCTATTAGACGACAAGGTCTAGAGCTCACAGCTGAGTGGAAACATGCTAATGAAGATACACAAGAAAAGAAAATTTTTGTCTCTGCAGAAAGAGTATGGGAAATTTTGAAACATATAACAGATGAAGATTCATTTATTTTGGGTATGGATCCAAATTTTGCAAGACCAGATTGGATGATTGTGACGGTTTTGCCTGTCCCTCCATTGTGTGTTCGTCCAGCTGTTGTTATGTTTGGCTCTGCCAAAAATCAAGATGACTTAACCCACAAGCTAGCTGATATAATAAAAGCTAACAATGACTTGGAAAAAAATGAGCAGTCTGGAGCTGCTGCTCATGTCCTTGCAGAGAATATAAGAATGTTACAATTTCATGTTGCTACTTTTGTTGACAATGACATGCCTGGTATGCCAAAAGCTATGCAGAAATCTGGGAAGCCCTTAAAGGCTCTCAAAGCCAGATTGAAAGGAAAAGAAGGAAGAATTCGAGGAAATCTAATGGGGAAACGTGTTGACTTCTCAGCTAGGACAGTAATCACACCTGATCCAAATTTACGTATAGATCAAGTTGGGGTTCCCAGATCAATTGCTCAAAATATGACATTCCCAGAGTTGGTGACTCCATTTAATCTTGATAGAATGCAAGAACTTGTCCGAAGAGGAAATGCACAATACCCTGGGGCAAAGTACATTGTAAGAGAAAACGGAGAAAGAATTGATTTAAGATTCCATCCTAAATCTTCAGATTTACATTTACTCTATGGTTACAAAGTAGAAAGACATCTAAGAGATGATGACCTTGTTATATTTAATCGTCAACCAACTCTTCACAAAATGAGTATGATGGGTCACAGAGTTAAGGTACTTCCTTGGTCAACGTTTCGTATGAATTTGAGTTGCACATCACCTTACAATGCTGATTTTGATGGAGATGAAATGAATTTGCATGTTCCTCAATCAATGGAAACAAGGGCTGAAGTTGAAAATATTCATATAACACCTAGACAAATTATAACTCCACAGGCTAATAAACCTGTAATGGGTATTGTGCAGGACACATTGACTGCCGTTAGAAAAATGACTAAGAGAGATGTTTTTTTAACAAAAGAACAAGTAATGAATCTTCTTATGTTTTTACCTACATGGGATGGTAAAATTCCTCAACCTTGCATTTTGAAACCACAGCCTTTATGGACAGGTAAACAAATATTCACTTTAATAATACCTGGTCCTGTTAATATGATTCGAACTCACTCTACTCATCCTGATGAAGAAGATGATGGTCCTTACAAGTGGATTTCTCCAGGAGATACCAAAGTTGTTGTAGAACATGGAGAACTACTAATGGGTATTTTGTGTAAAAAGTCGCTTGGTGCATCTGCTGGCTCTCTGTTGCATATTTGCATGTTGGAATTAGGCCATGAAACTGCTGGACGATTCTACGGTAACATTCAGACTGTCATTAATAACTGGCTTCTGTTGGAAGGTCACTCAATTGGTATTGGTGACACTATTGCTGATCCACAGACATATCAAGAAATTCAGCGTGCAATCGTAAAAGCTAAAGATGACGTAATAGAAGTCATTCAGAAAGCCCACAATATGGAATTGGAACCCACACCTGGTAATACACTAAGGCAGACCTTTGAAAATCAAGTGAACCGTATCCTCAATGATGCTCGTGATAAAACAGGTGGATCTGCTAAGAAATCATTAACAGAATACAATAATCTCAAAGCTATGGTAGTTGCTGGCTCGAAAGGTTCAAACATTAATATTTCACAAGTCATTGCTTGTGTAGGCCAACAGAATGTTGAAGGAAAACGAATCCCATTTGGATTTAGAAAACGCACCTTACCCCACTTTATTAAAGATGATTATGGTCCTGAATCCAGAGGTTTTGTTGAAAACTCTTATCTAGCTGGTCTGACTCCTTCAGAATTCTATTTTCACGCCATGGGTGGACGTGAAGGTTTAATTGATACTGCTGTAAAAACTGCTGAAACTGGATACATTCAACGGCGTCTCATTAAAGCCATGGAGTCTGTAATGGTCCACTATGATGGTACAGTTAGAAACTCTGTTGGACAACTTATTCAATTGAGGTATGGTGAGGACGGTCTCGCAGGAGAGACAGTAGAATTCCAGAACCTGCCGACTGTTAAATTGTCAAATAAAGCATTTGAAAAGAAATTCAAATTTGACTCTTCCAATGAGAGATATCTGAAGAGAATTTTCAGTGAAGACATAGTCAGAGAGCTAACAGAATCTGGAAGTGTCATAGCTGACCTTGAAAGTGAGTGGGAACAACTTTCTAAAGACAGAGAAACATTACGTCAGATTTTCCCAACGGGAGAATCTAAGGTTGTATTGCCATGTAATTTCAAGAGAATGATTTGGAATGCTCAGAAAACATTCCACATAAACAAGAGAATACCAACAGACTTAAGCCCTATCAAAGTTATAAAAGGTGTATCAGACCTTCTAAAGAAGTGTGTCATTGTAGCTGGTGATGATCGTTTGTCTAAGCAAGCCAATGAGAATGCTACATTACTTTTCCAATGCTTAGTGAGATCAACACTTTGTACAAAATTTGTATCTGAAGAACATAGATTATCTAGTGTAGCATTTGAATGGCTTATCGGGGAAATAGAGGCAAGATTCCAGCAAGCACAAGTAAATCCAGGTGAAATGGTAGGCGCTTTAGCTGCTCAATCACTTGGTGAGCCAGCTACTCAGATGACATTGAATACCTTCCATTTTGCTGGTGTATCATCCAAAAATGTAACACTTGGTGTGCCTCGTCTGAAGGAAATCATCAACATTTCTAAGAAACCAAAGGCTCCTTCTCTAACTGTATTTTTGACCGGTGGAGCAGCCAGAGATGCCGAAAAAGCCAAAAACGTTCTCTGTAGATTAGAACATACAACTTTACGTAAAGTTACTGCTAACACGGCTATTTATTATGACCCTGATCCTCAGAATACTGTTATTGCAGAGGACCAAGAATTTGTCAATGTTTACTACGAAATGCCTGACTTTGATCCTGCGAAAATTTCGCCTTGGTTATTGCGTATTGAACTGGACCGTAAGAGAATGACCGACAAGAAATTAACAATGGAACAGATTGCTGAGAAAATTAATGCTGGTTTTGGTGATGATCTCAATTGTATCTTCAATGATGACAATGCTGAAAAGTTAGTTTTGCGAATTAGAATCATGAATAATGAAGAAAGTAAATTCCAAGATCATGATGAAGAGACAGTAGACAAAATGGAAGATGACATGTTCTTAAGATGTATTGAAGCAAACATGCTGTCTGATATGACTTTGCAAGGCATTGAGGCTATTGCAAAAGTGTATATGCATTTACCACAGACAGAAGCTAAGAAACGTATAACTATAACTGAACAGGGAGAGTTCAAAGCTATAGCAGAATGGTTATTGGAAACAGACGGCACATCTCTTATGAAAGTGCTCTCAGAGCGTGATGTGGATCCAATCAGAACTTTTAGTAACGACATTTGTGAGATATTCCAAGTGCTTGGAATTGAAGCTGTACGAAAATCCGTCGAAAAAGAAATGAATGCGGTTTTGCAGTTCTACGGTCTATACGTGAATTATCGACACTTGGCATTGCTTTGTGACGTCATGACAGCAAAAGGTTATCTTATGGCCATCACACGTCACGGCATTAACCGACAGGACACTGGTGCTCTTATGAGATGTTCATTTGAGGAAACCGTCGATGTTTTATTGGACGCTGCCAGTCATGCTGAAGTGGATCCTATGAGAGGAGTATCAGAAAATATTATAATGGGACAGTTGCCGAGAATGGGTACTGGTTGCTTCGATTTATTACTTGATGGCGAGAAGTGCAAGGAAGCAATGGGCGGTCTTGGAGGCGCAGAAGTGGGAATGTATTTCGGTGTCGGAACGCCATCTATGTCACCACTTATGACTCCCTGGTCTACACAGAATACACCAGGATATGGAAGCAGCGTGTGGTCTCCATGTCAAGTTGGCAGCAGTATGACTCCTGGAGGACCATCATTCTCGCCATCTAACGCATCTGACGCATCAGGACTCTCACCGGCATACAGTAATGCTTGGTCACCACAACCTGGTTCACCAGGATCTCCCGGACCTCCGCTTTCACCTTACTCGTCGCCCGCAGGAGCGTCACCATCTTACTCCCCATCGAATCCTGTTTACGCTCCCGCGTCCCCGAGTATTACTCCAACATCACCACATTATTCACCTGCCAGTCCTTCTTACTCTCCAACTTCACCCAATTATTCCCCGACTTCACCAATATACTCGCCAACATCACCCAGCTACTCGCCAACATCGCCTGGTTATTCGCCCACATCCCCATTATACTCCCCAGCTTCTCCTAGATACTCTCCGTCATCTCCCAACTATTCACCAGCAAGTCCGGCTTATTCAACAACTTCTAATTTCCCGACAACTTCACCTAACTATTCTCCATCAAGTCCTTCGTATTCTCCCACGAGTCTATCGTATTCTCCAACGAGCCCAGGTTATTCCACATCCCCTGGCTATTCGCCCTCGTCACCTAGATATTCACCAAATAGTCCTGTCTACAGTCCTACTTCATCAAATTATTCGCCTTCGTCTCCAAATTACACTTCTGGATCTGTTTATTCACCTACGAGTCCTACATATTCACCTACTTCTCGCTCATATTCTCCATCATCACCGAGCTATTCGCAGTCTTCTCCAAATTATTCACCCTCGTCACCGAATTATTCTCCTACTTCGCCCTCTGTGGCTGGAGGTAGTCCTACATATTCACCAACAAGTCAGCAATATTCTCCAACCAGTCCACAGTATTCTCCGACTAGTCCAGGCTATTCTTCTACATCACAACATCCTAGTAGCACTAGGATCATCAAAATATTCCCCGACATCGCCTACTTTTACTCCTACTTCTCCCAATTATTCTCCGAGCTCTCCTGCGTATTCTTCCACTGGTGGACCATCTACCTATTCTCCAACTTCACCAACATATTCATCTACTTCACCCAATTATGA

Protein

MATANDSKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPKIKEVIMKSKGQPRKRLTYVYDLCKGKNICEGGEDMDIGKEGEEGKRGSGHGGCGHYQPSIRRQGLELTAEWKHANEDTQEKKIFVSAERVWEILKHITDEDSFILGMDPNFARPDWMIVTVLPVPPLCVRPAVVMFGSAKNQDDLTHKLADIIKANNDLEKNEQSGAAAHVLAENIRMLQFHVATFVDNDMPGMPKAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNLDRMQELVRRGNAQYPGAKYIVRENGERIDLRFHPKSSDLHLLYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGPVNMIRTHSTHPDEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHETAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEFQNLPTVKLSNKAFEKKFKFDSSNERYLKRIFSEDIVRELTESGSVIADLESEWEQLSKDRETLRQIFPTGESKVVLPCNFKRMIWNAQKTFHINKRIPTDLSPIKVIKGVSDLLKKCVIVAGDDRLSKQANENATLLFQCLVRSTLCTKFVSEEHRLSSVAFEWLIGEIEARFQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPAKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNNEESKFQDHDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKRITITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDGEKCKEAMGGLGGAEVGMYFGVGTPSMSPLMTPWSTQNTPGYGSSVWSPCQVGSSMTPGGPSFSPSNASDASGLSPAYSNAWSPQPGSPGSPGPPLSPYSSPAGASPSYSPSNPVYAPASPSITPTSPHYSPASPSYSPTSPNYSPTSPIYSPTSPSYSPTSPGYSPTSPLYSPASPRYSPSSPNYSPASPAYSTTSNFPTTSPNYSPSSPSYSPTSLSYSPTSPGYSTSPGYSPSSPRYSPNSPVYSPTSSNYSPSSPNYTSGSVYSPTSPTYSPTSRSYSPSSPSYSQSSPNYSPSSPNYSPTSPSVAGGSPTYSPTSQQYSPTSPQYSPTSPGYSSTSQHPSSTRIIKIFPDIAYFYSYFSQLFSELSCVFFHWWTIYLFSNFTNIFIYFTQL

Description

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Largest and catalytic component of RNA polymerase II which synthesizes mRNA precursors and many functional non-coding RNAs. Forms the polymerase active center together with the second largest subunit. Pol II is the central component of the basal RNA polymerase II transcription machinery. It is composed of mobile elements that move relative to each other. RPB1 is part of the core element with the central large cleft, the clamp element that moves to open and close the cleft and the jaws that are thought to grab the incoming DNA template. At the start of transcription, a single-stranded DNA template strand of the promoter is positioned within the central active site cleft of Pol II. A bridging helix emanates from RPB1 and crosses the cleft near the catalytic site and is thought to promote translocation of Pol II by acting as a ratchet that moves the RNA-DNA hybrid through the active site by switching from straight to bent conformations at each step of nucleotide addition. During transcription elongation, Pol II moves on the template as the transcript elongates. Elongation is influenced by the phosphorylation status of the C-terminal domain (CTD) of Pol II largest subunit (RPB1), which serves as a platform for assembly of factors that regulate transcription initiation, elongation, termination and mRNA processing (By similarity).

Catalytic Activity

a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)

Subunit

Component of the RNA polymerase II (Pol II) complex consisting of 12 subunits.

Miscellaneous

The binding of ribonucleoside triphosphate to the RNA polymerase II transcribing complex probably involves a two-step mechanism. The initial binding seems to occur at the entry (E) site and involves a magnesium ion temporarily coordinated by three conserved aspartate residues of the two largest RNA Pol II subunits. The ribonucleoside triphosphate is transferred by a rotation to the nucleotide addition (A) site for pairing with the template DNA. The catalytic A site involves three conserved aspartate residues of the RNA Pol II largest subunit which permanently coordinate a second magnesium ion.

Similarity

Belongs to the RNA polymerase beta' chain family.

Keywords

Complete proteome DNA-binding DNA-directed RNA polymerase Magnesium Metal-binding Nucleotidyltransferase Nucleus Phosphoprotein Reference proteome Repeat Transcription Transferase Zinc

Feature

chain DNA-directed RNA polymerase subunit

Uniprot

H9J1U7 A0A2A4K055 A0A2H1W8D6 A0A194RHG1 A0A194PUQ9 A0A212FIV3 + More
E9RHI0 A0A0L7LRG9 E9RHI1 E9RHH3 A0A2A3E114 A0A0N0U3X3 E9RHI3 A0A1L8DG93 E9RHF7 A0A026WX21 A0A195AWI3 A0A158NHY9 A0A3L8DBD8 F4WPV9 E2AC10 E9IBL8 A0A0A1XD23 W8BEC5 A0A0C9QJP9 E9RHF6 B3NUC1 A0A1W4UN38 E2BXG8 B4PY98 W4VRN9 Q29IN2 A0A1I8PKW2 E9RHI2 D0Z769 A9UNH9 B3MQ29 Q9XZS1 P04052 Q9XZU9 B4IK28 E9RHH2 Q9XZS2 B4L732 E9RHF4 T1PEK4 B4JXA6 A0A0L0BLV0 B4NDK9 B4MAN9 A0A1B0FRH3 A0A1A9W5D9 A0A1A9XZ32 A0A1A9V990 A0A1B0BS96 A0A1Q3F3F7 A0A1A9ZXW1 A0A0M4EQK9 E9RHF3 E3SH41 J9HHP4 A0A1B0B3A4 A0A232ETA4 E9RHG1 E3SH44 A0A182H837 E9RHG2 E9RHG4 E9RHG3 A0A195CKR9 A0A2J7RPS9 A0A336M373 A0A151WR97 E9RHF9 A0A2M4A2M8 A0A182FN74 W5JT78 A0A195EGC4 A0A195FEH0 E3SH43 A0A182QII2 A0A182MZD6 A0A182J9W8 A0A0K8TN99 A0A182XZK9 E9RHF5 A0A182P0E8 A0A182MUT6 E9RHG6 B4H2R8 A0A182RVM6 A0A182JP23 A0A182W7S8 A0A067RMD2 A0A154PFV5 E9RHG0 A0A182L2H0 A0A182UI70 A0A182VF69 E9RHF8

EC Number

2.7.7.6

Pubmed

19121390 26354079 22118469 21075208 26227816 24508170 + More
21347285 30249741 21719571 20798317 21282665 25830018 24495485 17994087 17550304 15632085 23185243 10224259 2496296 10731132 12537572 3025586 2992806 8552047 3122024 10880485 25315136 26108605 22217779 17510324 28648823 26483478 20920257 23761445 26369729 25244985 24845553 20966253

EMBL

BABH01007978 BABH01007979 NWSH01000300 PCG77627.1 ODYU01006685 SOQ48754.1 + More
KQ460207 KPJ16760.1 KQ459597 KPI94870.1 AGBW02008321 OWR53673.1 AB596931 BAJ78684.1 JTDY01000311 KOB77756.1 AB596932 BAJ78685.1 AB596924 BAJ78677.1 KZ288466 PBC25443.1 KQ435878 KOX70044.1 AB596934 BAJ78687.1 GFDF01008612 JAV05472.1 AB596908 BAJ78661.1 KK107078 EZA60388.1 KQ976725 KYM76536.1 ADTU01016112 QOIP01000011 RLU17199.1 GL888255 EGI63788.1 GL438389 EFN69028.1 GL762111 EFZ22137.1 GBXI01005924 JAD08368.1 GAMC01015024 JAB91531.1 GBYB01000787 JAG70554.1 AB596907 BAJ78660.1 CH954180 EDV46036.1 GL451254 EFN79616.1 CM000162 EDX01960.1 GANO01000894 JAB58977.1 CH379063 EAL32621.1 AB596933 BAJ78686.1 BT100316 ACZ54678.1 BT031343 ABY21756.1 CH902621 EDV44455.1 Y18878 AJ547806 AJ548510 AJ548511 AJ548512 AJ548513 AJ548514 AJ548515 AJ548516 AJ548517 AJ548518 AJ548519 AJ548520 AJ548521 AJ548522 AJ548523 AJ548524 AJ548525 AJ548526 AJ548527 AJ548528 AJ548529 AJ548530 AJ548531 AJ548532 OUUW01000021 CAB42795.1 CAD68001.1 CAD70679.1 CAD70680.1 CAD70681.1 CAD70682.1 CAD70683.1 CAD70684.1 CAD70685.1 CAD70686.1 CAD70687.1 CAD70688.1 CAD70689.1 CAD70690.1 CAD70691.1 CAD70692.1 CAD70693.1 CAD70694.1 CAD70695.1 CAD70696.1 CAD70697.1 CAD70698.1 CAD70699.1 CAD70700.1 CAD70701.1 SPP89508.1 M27431 AE014298 M14203 M11798 M19537 AF272643 AF272644 AF272645 AF272646 AF272647 AF272648 AF272649 AF272650 AF272651 AF272652 AF272653 Y18876 AAF89193.1 AAF89194.1 AAF89195.1 AAF89196.1 AAF89197.1 AAF89198.1 AAF89199.1 AAF89200.1 AAF89201.1 AAF89202.1 AAF89203.1 CAB42800.1 CH480851 EDW51400.1 AB596923 BAJ78676.1 Y18877 CAB42796.1 CH933812 EDW06178.1 AB596905 BAJ78658.1 KA647217 AFP61846.1 CH916376 EDV95382.1 JRES01001679 KNC21002.1 CH964239 EDW81831.1 CH940655 EDW66298.1 CCAG010014276 JXJN01019589 GFDL01012955 JAV22090.1 CP012528 ALC48227.1 AB596904 BAJ78657.1 GU060489 ADO24381.1 CH477223 EJY57389.1 JXJN01007805 JXJN01007806 NNAY01002304 OXU21581.1 AB596912 BAJ78665.1 GU060492 ADO24384.1 JXUM01028604 JXUM01028605 KQ560826 KXJ80723.1 AB596913 BAJ78666.1 AB596915 BAJ78668.1 AB596914 BAJ78667.1 KQ977622 KYN01316.1 NEVH01001355 PNF42834.1 UFQT01000381 SSX23771.1 KQ982813 KYQ50333.1 AB596910 BAJ78663.1 GGFK01001684 MBW35005.1 ADMH02000216 ETN67346.1 KQ978957 KYN27201.1 KQ981636 KYN38776.1 GU060491 ADO24383.1 AXCN02000604 GDAI01002193 JAI15410.1 AB596906 BAJ78659.1 AXCM01001126 AB596917 BAJ78670.1 CH479204 EDW30635.1 KK852425 KDR24158.1 KQ434896 KZC10731.1 AB596911 BAJ78664.1 AB596909 BAJ78662.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151 UP000037510 + More
UP000242457 UP000053105 UP000053097 UP000078540 UP000005205 UP000279307 UP000007755 UP000000311 UP000008711 UP000192221 UP000008237 UP000002282 UP000001819 UP000095300 UP000007801 UP000268350 UP000000803 UP000001292 UP000009192 UP000095301 UP000001070 UP000037069 UP000007798 UP000008792 UP000092444 UP000091820 UP000092443 UP000078200 UP000092460 UP000092445 UP000092553 UP000008820 UP000215335 UP000069940 UP000249989 UP000078542 UP000235965 UP000075809 UP000069272 UP000000673 UP000078492 UP000078541 UP000075886 UP000075884 UP000075880 UP000076408 UP000075885 UP000075883 UP000008744 UP000075900 UP000075881 UP000075920 UP000027135 UP000076502 UP000075882 UP000075902 UP000075903

PRIDE

H9J1U7 D0Z769 A9UNH9 P04052

Pfam

PF04992   RNA_pol_Rpb1_6        + More
PF04983   RNA_pol_Rpb1_3
PF04997   RNA_pol_Rpb1_1
PF05000   RNA_pol_Rpb1_4
PF04998   RNA_pol_Rpb1_5
PF04990   RNA_pol_Rpb1_7
PF00623   RNA_pol_Rpb1_2
PF05001   RNA_pol_Rpb1_R

Interpro

IPR007066   RNA_pol_Rpb1_3        + More
IPR007080   RNA_pol_Rpb1_1
IPR007081   RNA_pol_Rpb1_5
IPR042102   RNA_pol_Rpb1_3_sf
IPR000722   RNA_pol_asu
IPR038120   Rpb1_funnel_sf
IPR000684   RNA_pol_II_repeat_euk
IPR007073   RNA_pol_Rpb1_7
IPR038593   RNA_pol_Rpb1_7_sf
IPR006592   RNA_pol_N
IPR007075   RNA_pol_Rpb1_6
IPR007083   RNA_pol_Rpb1_4

Gene 3D

1.10.132.30 1.10.274.100 3.30.1360.140

ProteinModelPortal

H9J1U7 A0A2A4K055 A0A2H1W8D6 A0A194RHG1 A0A194PUQ9 A0A212FIV3 + More
E9RHI0 A0A0L7LRG9 E9RHI1 E9RHH3 A0A2A3E114 A0A0N0U3X3 E9RHI3 A0A1L8DG93 E9RHF7 A0A026WX21 A0A195AWI3 A0A158NHY9 A0A3L8DBD8 F4WPV9 E2AC10 E9IBL8 A0A0A1XD23 W8BEC5 A0A0C9QJP9 E9RHF6 B3NUC1 A0A1W4UN38 E2BXG8 B4PY98 W4VRN9 Q29IN2 A0A1I8PKW2 E9RHI2 D0Z769 A9UNH9 B3MQ29 Q9XZS1 P04052 Q9XZU9 B4IK28 E9RHH2 Q9XZS2 B4L732 E9RHF4 T1PEK4 B4JXA6 A0A0L0BLV0 B4NDK9 B4MAN9 A0A1B0FRH3 A0A1A9W5D9 A0A1A9XZ32 A0A1A9V990 A0A1B0BS96 A0A1Q3F3F7 A0A1A9ZXW1 A0A0M4EQK9 E9RHF3 E3SH41 J9HHP4 A0A1B0B3A4 A0A232ETA4 E9RHG1 E3SH44 A0A182H837 E9RHG2 E9RHG4 E9RHG3 A0A195CKR9 A0A2J7RPS9 A0A336M373 A0A151WR97 E9RHF9 A0A2M4A2M8 A0A182FN74 W5JT78 A0A195EGC4 A0A195FEH0 E3SH43 A0A182QII2 A0A182MZD6 A0A182J9W8 A0A0K8TN99 A0A182XZK9 E9RHF5 A0A182P0E8 A0A182MUT6 E9RHG6 B4H2R8 A0A182RVM6 A0A182JP23 A0A182W7S8 A0A067RMD2 A0A154PFV5 E9RHG0 A0A182L2H0 A0A182UI70 A0A182VF69 E9RHF8

PDB

6O9L E-value=0, Score=6469

KEGG

101745099 K03006 DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] | (RefSeq) DNA-directed RNA polymera

PATHWAY

03020 RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0005665 GO:0003899 GO:0006366 GO:0016021 GO:0003677 GO:0006351 GO:0005703 GO:0005634 GO:0046872 GO:0005700 GO:0005737 GO:0006631 GO:0006635 GO:0006281 GO:0048384

Subcellular location

Nucleus

Length:

1863

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

19.27095

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00130

outside

1 - 1840

TMhelix

1841 - 1860

inside

1861 - 1863

Pi

333.251097

Theta

233.045615

Tajima's D

0.815816

CLR

0.005205

CSRT

0.609719514024299

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics