SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO02744  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA003480
Annotation
PREDICTED:_serrate_RNA_effector_molecule_homolog_isoform_X1_[Bombyx_mori]
Location
Bomo_Chr5(+):9984777-9997463      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.875
 

Sequence

CDS
ATGGCTGACAGTGATGACGAGTATGATCGTAAAAGACGAGATAAGTTTAGAGGTGAAAGAGGTCCTGCTGACAACAGCAGTTACCGAAGCAGCGATAGACGTGAAGAGCGTAGTCGTGGACGAGAAGAATGGACAGAGAGGTCTCGTGGAGGTCGATCAGGTCCTGATTACAGGGACTACCGGAGCGGTGTAACTGGTACACGTGGATACTCACCAATAAGAGGGGAGGGTCCACCAAATAAAAGGATCAGACCAGAATGGCCTATTGAAGATAGAAGATATGGAGGTATGCCACATGACTCTTATGGGTCATATGGTTGGGCCCATGATCATTTTGGCCCACATCCAGCTCATCAAGGTTATGGACAACCCATGCCACCAGTACCAGCCAGGGATGCAGTTATGCCAGTTGGTTCAGCAGAGGGACCACCTACCATGATGACCTTCAAAGCTTTTCTTGCTGCCCAAGATGATTCAATTACAGTAGATGATGCAATTCTAAAGTATAATGAATACAAACTAGAATTTAGGAGACAACAATTAAATGAATTTTTTGTTGCACACAAGGATGAAGAATGGTTTAAGATCAAATACCATCCTGAAGAGTCCATTAAACGAAAAGAAGAACAGCTATCTGCATTAAAGAACCGTCTGAATGTTTTCCTTGAACTTTTGGAAACTGGAGAATTAGATAAAGTATCAGTTGATGTGGATAAGACTGAGAAACTAATTCGCTTGTTGGATATTGTGGTTATAAAACTAGAAGGTGGTTCTGAAGAAGATATAAAAGAACTTGATGAACCAGTGAATGTTGAAAATTCGAACGTCAATGACAAAGCTGATAAAATAGTTTCTGACAAACTTATAGTTATTGAAGATGATACAGTAAAAGTCAAAGAAGAGAAAGAAGACGATAAGCAGGAGAAGAAAACGGAATCTCCTAAATCAACAGCCCCTTTGACGATGGAGATAGACCCACATTTACGTCATTTACAAGAACAAGCCAAATTGTTCTCTCGCTATAACTCTACTGATGAAACTGAAGAGAAACCTGCAGAGAAACCTGCAGAGAAAGAACCCCCACCGCCCGGTTCATCATCAAGTTCTTCGTCGTCAAGTTCATCCTCATCCAGTTCTGAAGACGAAGGCGAATCTACAAGTCGTCGCAAGTCCAAGTCCAAATCTAAATCTAAAACTCCAGATAAGTCACCGCAAAGAAAAGAAAGTTCCAAATCTCCAAGTGCAGTGAAAGATAAACCTTTGGAAAATAAGGAAAAAAATAAAAGCGGTGACGAAAAAGCAGATTCTGTCAATGAGGTTGAGATAGTAGAAGAGAAGAAACGGACACGAGCATTGCACAAGACAACATCTATTTTCTTGAGGAATTTAGCTCCCACTATAACTAAAGCTGAAGTTGAAGCAATGTGTAAACGCTATGGAGGCTTCCTGCGGGTGGCTTTAGCAGATCCATTACCGGAACGTCGCTGGTTCCGACGGGGCTGGGTCACTTTCCTTCGCGACGTCAACATTAAAGATATCTGCTGGAACCTAAACAACATACGGTTGCGGGAATGTGAATTGGGTGCCATTGTGAACAGAGACCTGCAACGTCGTATCCGCTCTGTTTCGGGTATCACCTTAGAGCGGCCGGTGCTGCGAGCTGATGCGCGTCTGGCGGCGCGCCTCGCTCATCTCCTGGACACTCGTACCAAATTGTGGGATCAAGAGATGCAAGAGGGGGACGAGGAAAAACCTCCACAGAATGAAAACTTCAGTCTTAACTCCAAGAATCCTGTTCTTCACAAAATTACGGAACATTTAATTGAAGAAGCATCAACAGAAGAAGAAGAGCTGCTCGGCTTGGAAGCTTCATCAGAAAATTCTACCGAACAACCTGATCCGGAACTGATTCGTGTACTAGATCGTCTGGTGCTGTATTTGAGGATTGTTCATTCGGTGGACTACTACAACCACTGCGAGTATCCGTATGAAGATGAAATGCCGAACCGTTGTGGTATTATGCATGCCCGTTCAGGACCACCTGCGAATAAGCCAAGTCAACAAGAAATACAAGATTACATAAAAACATTCGAAGGTAAAATGGCTGCTTTCCTTCAAGATGTGAAACCACTTCCTGATGAGGAATTACAGAAACTTGGAATTAAGGATTCTGAAGCTGAGGTTGAGAAGTTTATTCAGTCAAATACTCAAGAGTTGGCGAAAGACAAATGGCTGTGTCCATTGAGTGGAAAAAAATTCAAAGGACCTGACTTTATCAGAAAGCATATTTTTAACAAACATGCTGAGAAGGTGGACGAAGTTCGGCGCGAGGTGGCGTACTTCAACGCGTACGTGCGCGACGTGCGGCGCCCGCAGCAGCCCGAGCCCGCCACGCGCTTGCCCGCCGCGCCGCACCACCACCAGCCGCCGCCCGCTCCGTACGGCAGCGCGGCAGGTGGCGGGGGCCGCGGCTGGGGCGGGTGGGGCGGGGGGGCGCCCCCCGCGCCCTACGCGCCGCGACACCCGCGCTTCTCGCGACCCAGGGGCGGCGGTGCAGATTTCCGCCCGGTGATACACTACCGCGATTTGGACGCCCCGCGTGAACCCGACGAGTTCATATAA
Protein
MADSDDEYDRKRRDKFRGERGPADNSSYRSSDRREERSRGREEWTERSRGGRSGPDYRDYRSGVTGTRGYSPIRGEGPPNKRIRPEWPIEDRRYGGMPHDSYGSYGWAHDHFGPHPAHQGYGQPMPPVPARDAVMPVGSAEGPPTMMTFKAFLAAQDDSITVDDAILKYNEYKLEFRRQQLNEFFVAHKDEEWFKIKYHPEESIKRKEEQLSALKNRLNVFLELLETGELDKVSVDVDKTEKLIRLLDIVVIKLEGGSEEDIKELDEPVNVENSNVNDKADKIVSDKLIVIEDDTVKVKEEKEDDKQEKKTESPKSTAPLTMEIDPHLRHLQEQAKLFSRYNSTDETEEKPAEKPAEKEPPPPGSSSSSSSSSSSSSSSEDEGESTSRRKSKSKSKSKTPDKSPQRKESSKSPSAVKDKPLENKEKNKSGDEKADSVNEVEIVEEKKRTRALHKTTSIFLRNLAPTITKAEVEAMCKRYGGFLRVALADPLPERRWFRRGWVTFLRDVNIKDICWNLNNIRLRECELGAIVNRDLQRRIRSVSGITLERPVLRADARLAARLAHLLDTRTKLWDQEMQEGDEEKPPQNENFSLNSKNPVLHKITEHLIEEASTEEEELLGLEASSENSTEQPDPELIRVLDRLVLYLRIVHSVDYYNHCEYPYEDEMPNRCGIMHARSGPPANKPSQQEIQDYIKTFEGKMAAFLQDVKPLPDEELQKLGIKDSEAEVEKFIQSNTQELAKDKWLCPLSGKKFKGPDFIRKHIFNKHAEKVDEVRREVAYFNAYVRDVRRPQQPEPATRLPAAPHHHQPPPAPYGSAAGGGGRGWGGWGGGAPPAPYAPRHPRFSRPRGGGADFRPVIHYRDLDAPREPDEFI

Summary

Uniprot
H9J1U3   A0A2H1WWD3  
Pubmed
19121390   
EMBL
BABH01007981    ODYU01011505    SOQ57276.1   
Proteomes
UP000005204   
PRIDE
H9J1U3   
Pfam
PF12066   DUF3546        + More
PF04959   ARS2
Interpro
IPR039727   SE/Ars2        + More
IPR007042   SERRATE/Ars2_C       
IPR035979   RBD_domain_sf       
IPR021933   SERRATE/Ars2_N       
IPR012677   Nucleotide-bd_a/b_plait_sf       
SUPFAM
SSF54928   SSF54928       
Gene 3D
3.30.70.330    
ProteinModelPortal
H9J1U3   A0A2H1WWD3  
PDB
6F7S     E-value=2.39559e-96,     Score=902

Ontologies

KEGG
101746441    no KO assigned | (RefSeq) serrate RNA effector molecule homolog
GO
GO:0003676   GO:0006397   GO:0000166   GO:0005634   GO:0008270   GO:0046872   GO:0005667   GO:0005737   GO:0006631   GO:0006635   GO:0006281   GO:0048384  
PANTHER
PTHR13165  

Topology

Length:
873
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00006
outside
1  -  873
 
 

Population Genetic Test Statistics

Pi
320.254916
Theta
230.208114
Tajima's D
1.339561
CLR
0.022974
CSRT
0.746012699365032
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26822097 SVSGITIERPVIR 100.00 7e-07
28467696 DAVIYEVFEDFGVR 100.00 7e-07
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